Wall clock time and date at job start Tue Mar 31 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 119.99952 * 2 1 4 4 C 1.38210 * 120.00121 * 180.25093 * 3 2 1 5 5 C 1.38254 * 120.00086 * 359.51506 * 4 3 2 6 6 C 1.38212 * 119.99955 * 0.43576 * 5 4 3 7 7 C 1.38215 * 120.00370 * 179.97438 * 2 1 3 8 8 C 1.50697 * 119.99921 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46909 * 45.45163 * 8 7 2 10 10 C 1.52999 * 109.47244 * 165.45043 * 8 7 2 11 11 C 1.50701 * 109.47023 * 184.99867 * 10 8 7 12 12 O 1.21287 * 120.00028 * 0.02562 * 11 10 8 13 13 N 1.34778 * 119.99854 * 180.02562 * 11 10 8 14 14 C 1.37090 * 120.00236 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00078 * 21.89030 * 14 13 11 16 16 C 1.38948 * 120.00307 * 201.89107 * 14 13 11 17 17 N 1.31409 * 120.00021 * 6.30266 * 16 14 13 18 18 Si 1.86805 * 120.00015 * 186.30414 * 16 14 13 19 19 H 1.48497 * 109.47278 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46779 * 120.00180 * 18 16 14 21 21 H 1.48501 * 109.46958 * 239.99684 * 18 16 14 22 22 C 1.46508 * 119.99750 * 359.97438 * 13 11 10 23 23 C 1.47196 * 109.46792 * 83.93166 * 22 13 11 24 24 N 7.24768 * 118.30321 * 168.50695 * 2 1 3 25 25 N 1.46503 * 109.47309 * 285.45280 * 8 7 2 26 26 C 1.34772 * 119.99622 * 302.88008 * 25 8 7 27 27 N 1.34783 * 119.99829 * 185.50926 * 26 25 8 28 28 O 1.21589 * 120.00653 * 5.51346 * 26 25 8 29 29 H 1.09003 * 109.46837 * 90.00468 * 1 2 3 30 30 H 1.09005 * 109.47072 * 209.99864 * 1 2 3 31 31 H 1.08998 * 109.47533 * 330.00399 * 1 2 3 32 32 H 1.08003 * 119.99526 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99742 * 179.71786 * 4 3 2 34 34 H 1.08004 * 120.00183 * 180.27599 * 5 4 3 35 35 H 1.07998 * 120.00376 * 179.83091 * 6 5 4 36 36 H 1.09000 * 109.47327 * 305.00303 * 10 8 7 37 37 H 1.08999 * 109.46730 * 65.00281 * 10 8 7 38 38 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.46903 * 203.92911 * 22 13 11 40 40 H 1.08994 * 109.47175 * 323.93202 * 22 13 11 41 41 H 0.97003 * 120.00170 * 122.87444 * 25 8 7 42 42 H 0.96998 * 119.99612 * 0.02562 * 27 26 25 43 43 H 0.96996 * 119.99904 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0052 5 6 4.2717 0.0002 -0.0004 6 6 3.5807 -1.1968 0.0007 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0017 9 1 0.6384 -2.4567 -0.7304 10 6 2.3988 -3.6420 -0.3603 11 6 1.6224 -4.9281 -0.4794 12 8 0.4238 -4.9324 -0.2935 13 7 2.2599 -6.0736 -0.7924 14 6 1.5536 -7.2435 -0.9013 15 1 0.4905 -7.2170 -1.0901 16 6 2.2053 -8.4635 -0.7688 17 7 3.4710 -8.4975 -0.4171 18 14 1.2823 -10.0554 -1.0906 19 1 -0.1198 -9.7466 -1.4700 20 1 1.9422 -10.7953 -2.1962 21 1 1.2911 -10.8897 0.1378 22 6 3.7076 -6.0683 -1.0175 23 6 4.4052 -6.1721 0.2745 24 7 4.9434 -6.2533 1.2715 25 7 0.8823 -2.7401 1.3334 26 6 1.6920 -2.7761 2.4101 27 7 1.1926 -3.1046 3.6182 28 8 2.8731 -2.5123 2.2919 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6582 2.1327 -0.0004 33 1 4.1203 2.1328 -0.0098 34 1 5.3518 0.0002 0.0001 35 1 4.1207 -2.1321 0.0017 36 1 2.8845 -3.4214 -1.3108 37 1 3.1543 -3.7446 0.4186 38 1 3.9259 -9.3492 -0.3242 39 1 3.9805 -6.9152 -1.6469 40 1 3.9950 -5.1405 -1.5120 41 1 -0.0728 -2.8717 1.4401 42 1 0.2505 -3.3154 3.7124 43 1 1.7754 -3.1309 4.3931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299715434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:40 Heat of formation + Delta-G solvation = 2.944212 kcal Electronic energy + Delta-G solvation = -29190.228506 eV Core-core repulsion = 25236.244061 eV Total energy + Delta-G solvation = -3953.984444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41341 -38.69056 -38.58339 -35.86241 -34.90117 -34.15220 -33.43241 -32.58241 -31.83877 -30.96178 -29.07653 -27.38108 -26.75414 -25.18747 -23.87492 -21.66219 -21.28782 -19.99617 -18.84123 -18.20021 -17.81130 -17.14170 -16.63157 -16.29408 -15.76641 -15.20244 -15.08193 -14.62802 -14.53361 -14.37802 -14.08428 -13.85768 -13.59431 -13.35559 -13.00487 -12.91181 -12.76334 -12.39995 -12.15555 -12.10155 -11.83176 -11.62946 -11.61001 -11.34628 -11.17963 -11.10423 -10.83800 -10.56618 -10.47092 -10.39032 -10.29126 -9.82894 -9.32635 -9.25049 -8.71842 -8.52982 -8.46779 -8.36959 -8.01102 -6.43950 -4.04686 1.52064 1.66083 3.09470 3.21101 3.26202 3.29185 3.61127 3.66183 3.85196 4.03943 4.08665 4.17371 4.65958 4.85258 4.95458 4.97347 5.05199 5.16296 5.19997 5.33515 5.39535 5.45728 5.54513 5.65994 5.71102 5.84047 5.88886 5.93611 5.96686 6.23866 6.25151 6.34696 6.36253 6.66926 6.71892 6.76531 6.87290 6.88959 7.06964 7.21775 7.25386 7.45389 7.93530 8.29750 8.33497 8.86525 9.00831 9.03139 9.21191 9.75200 10.59561 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.003923 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.063118 B = 7134.816960 C = 7386.560520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.133 4.133 4 C -0.119 4.119 5 C -0.133 4.133 6 C -0.064 4.064 7 C -0.087 4.087 8 C 0.232 3.768 9 H 0.103 0.897 10 C -0.161 4.161 11 C 0.465 3.535 12 O -0.575 6.575 13 N -0.447 5.447 14 C -0.303 4.303 15 H 0.106 0.894 16 C 0.029 3.971 17 N -0.890 5.890 18 Si 0.932 3.068 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.283 1.283 22 C 0.221 3.779 23 C 0.248 3.752 24 N -0.475 5.475 25 N -0.721 5.721 26 C 0.706 3.294 27 N -0.872 5.872 28 O -0.586 6.586 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.272 0.728 39 H 0.138 0.862 40 H 0.076 0.924 41 H 0.399 0.601 42 H 0.393 0.607 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 14.872 -1.267 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.075 4.075 3 C -0.151 4.151 4 C -0.137 4.137 5 C -0.151 4.151 6 C -0.082 4.082 7 C -0.088 4.088 8 C 0.126 3.874 9 H 0.121 0.879 10 C -0.202 4.202 11 C 0.254 3.746 12 O -0.459 6.459 13 N -0.167 5.167 14 C -0.431 4.431 15 H 0.123 0.877 16 C -0.173 4.173 17 N -0.531 5.531 18 Si 0.759 3.241 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.209 1.209 22 C 0.093 3.907 23 C -0.071 4.071 24 N -0.155 5.155 25 N -0.375 5.375 26 C 0.404 3.596 27 N -0.439 5.439 28 O -0.464 6.464 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.155 0.845 40 H 0.094 0.906 41 H 0.233 0.767 42 H 0.221 0.779 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.384 14.792 0.023 14.982 hybrid contribution -0.950 -1.243 0.153 1.572 sum -3.334 13.548 0.175 13.953 Atomic orbital electron populations 1.20837 0.91644 1.02658 1.02192 1.19681 0.95713 0.92580 0.99543 1.20861 0.94224 0.96999 1.03061 1.21035 0.94275 0.97748 1.00639 1.21090 0.99651 0.92612 1.01796 1.21105 0.93617 0.98186 0.95331 1.19898 0.94019 0.93950 1.00969 1.19204 0.95235 0.89461 0.83481 0.87942 1.22238 1.00322 0.94095 1.03546 1.20080 0.88298 0.85079 0.81145 1.90478 1.14933 1.86395 1.54044 1.43569 1.04702 1.07606 1.60819 1.19757 0.94721 0.81719 1.46867 0.87661 1.25340 0.96107 0.99754 0.96141 1.69736 1.09920 1.27067 1.46345 0.85755 0.79515 0.80892 0.77910 1.19256 1.20566 1.20902 1.18834 0.80730 1.03101 0.87991 1.29292 0.92688 0.90045 0.95047 1.80894 1.10736 1.12328 1.11590 1.44889 1.10138 1.77130 1.05382 1.16021 0.85234 0.77638 0.80670 1.43002 1.13912 1.77449 1.09551 1.90938 1.14612 1.56113 1.84719 0.91208 0.91234 0.92036 0.86749 0.86779 0.86546 0.85652 0.89222 0.87960 0.91722 0.84496 0.90630 0.76724 0.77946 0.75907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.34 36.01 0.34 -0.89 16 2 C -0.07 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.13 -1.63 9.70 -39.58 -0.38 -2.01 16 4 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 5 C -0.13 -1.82 10.05 -39.59 -0.40 -2.21 16 6 C -0.06 -0.98 7.34 -39.58 -0.29 -1.27 16 7 C -0.09 -1.29 4.33 -104.62 -0.45 -1.74 16 8 C 0.23 3.59 1.54 -69.08 -0.11 3.48 16 9 H 0.10 1.51 7.40 -51.93 -0.38 1.12 16 10 C -0.16 -2.83 2.42 -27.88 -0.07 -2.90 16 11 C 0.47 10.07 7.42 -10.98 -0.08 9.98 16 12 O -0.58 -13.48 15.04 5.55 0.08 -13.40 16 13 N -0.45 -10.28 2.60 -117.94 -0.31 -10.58 16 14 C -0.30 -7.65 9.32 -14.94 -0.14 -7.79 16 15 H 0.11 2.77 7.38 -52.48 -0.39 2.38 16 16 C 0.03 0.70 5.20 -17.47 -0.09 0.61 16 17 N -0.89 -22.42 8.89 55.50 0.49 -21.92 16 18 Si 0.93 19.77 29.56 -169.99 -5.02 14.75 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.22 4.51 4.90 -6.83 -0.03 4.48 16 23 C 0.25 5.73 12.95 -20.77 -0.27 5.46 16 24 N -0.48 -11.92 18.54 42.15 0.78 -11.14 16 25 N -0.72 -10.89 3.47 -59.81 -0.21 -11.10 16 26 C 0.71 11.86 8.20 -86.92 -0.71 11.14 16 27 N -0.87 -11.34 8.88 27.63 0.25 -11.09 16 28 O -0.59 -11.78 13.25 5.29 0.07 -11.71 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.74 5.90 -51.93 -0.31 0.43 16 31 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 35 H 0.13 2.02 6.03 -52.49 -0.32 1.71 16 36 H 0.09 1.35 7.17 -51.93 -0.37 0.97 16 37 H 0.10 2.04 4.87 -51.93 -0.25 1.78 16 38 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.14 2.89 6.26 -51.93 -0.33 2.56 16 40 H 0.08 1.21 6.70 -51.93 -0.35 0.87 16 41 H 0.40 5.29 8.54 -40.82 -0.35 4.94 16 42 H 0.39 3.98 8.85 -40.82 -0.36 3.62 16 43 H 0.41 4.97 8.93 -40.82 -0.36 4.61 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -33.06 356.93 -7.20 -40.27 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -5.01 Total: 17.66 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: -3.70 Total: 12.89 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: 1.01 Total: -65.84 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.15 Total: -25.10 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.06 -7.20 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299715434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.211 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds