Wall clock time and date at job start Tue Mar 31 2020 04:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38240 * 119.99963 * 2 1 4 4 C 1.38234 * 120.00256 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.99466 * 0.25073 * 4 3 2 6 6 C 1.50704 * 119.99382 * 179.73085 * 5 4 3 7 7 N 1.46500 * 109.47306 * 90.00203 * 6 5 4 8 8 C 1.34779 * 120.00044 * 179.97438 * 7 6 5 9 9 O 1.21584 * 119.99629 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00064 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00174 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47240 * 180.02562 * 11 10 8 13 13 O 1.21294 * 120.00021 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00167 * 179.97438 * 12 11 10 15 15 C 1.37094 * 120.00155 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00325 * 17.72530 * 15 14 12 17 17 C 1.38949 * 120.00083 * 197.72743 * 15 14 12 18 18 N 1.31411 * 119.99815 * 21.39054 * 17 15 14 19 19 Si 1.86802 * 120.00162 * 201.39587 * 17 15 14 20 20 H 1.48499 * 109.47011 * 59.99466 * 19 17 15 21 21 H 1.48499 * 109.47272 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46818 * 299.99758 * 19 17 15 23 23 C 1.46498 * 119.99817 * 0.02562 * 14 12 11 24 24 C 1.47200 * 109.47084 * 84.22769 * 23 14 12 25 25 N 9.77916 * 156.87857 * 296.23692 * 4 1 2 26 26 C 1.38236 * 120.00566 * 359.49411 * 5 4 3 27 27 C 1.38231 * 120.00245 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47381 * 90.00233 * 1 2 3 29 29 H 1.09001 * 109.47084 * 210.00312 * 1 2 3 30 30 H 1.09001 * 109.47025 * 329.99782 * 1 2 3 31 31 H 1.08006 * 119.99888 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.00296 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.46490 * 209.99981 * 6 5 4 34 34 H 1.08991 * 109.47413 * 329.99612 * 6 5 4 35 35 H 0.97000 * 119.99873 * 359.97438 * 7 6 5 36 36 H 0.97004 * 119.99698 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.46859 * 300.00027 * 11 10 8 38 38 H 1.09001 * 109.47288 * 59.99707 * 11 10 8 39 39 H 0.97006 * 119.99812 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.47003 * 204.22861 * 23 14 12 41 41 H 1.09000 * 109.47253 * 324.22964 * 23 14 12 42 42 H 1.08001 * 120.00267 * 180.25589 * 26 5 4 43 43 H 1.07999 * 119.99797 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2716 0.0001 -0.0063 6 6 5.7786 0.0002 -0.0130 7 7 6.2732 -0.0029 1.3660 8 6 7.5993 -0.0039 1.6063 9 8 8.3852 -0.0017 0.6786 10 7 8.0543 -0.0062 2.8750 11 6 9.4958 -0.0067 3.1362 12 6 9.7367 -0.0101 4.6238 13 8 8.7967 -0.0124 5.3904 14 7 10.9966 -0.0116 5.1024 15 6 11.2158 -0.0152 6.4557 16 1 10.4226 -0.3016 7.1305 17 6 12.4584 0.3496 6.9593 18 7 13.2728 1.0813 6.2325 19 14 12.9713 -0.2002 8.6693 20 1 12.9810 -1.6839 8.7301 21 1 14.3313 0.3159 8.9681 22 1 12.0094 0.3299 9.6689 23 6 12.1319 -0.0094 4.1765 24 6 12.4242 1.3724 3.7619 25 7 12.6483 2.4409 3.4434 26 6 3.5805 -1.1971 -0.0010 27 6 2.1982 -1.1971 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1205 2.1326 -0.0010 33 1 6.1396 -0.8887 -0.5305 34 1 6.1396 0.8913 -0.5265 35 1 5.6461 -0.0043 2.1061 36 1 7.4272 -0.0076 3.6151 37 1 9.9449 -0.8959 2.6938 38 1 9.9450 0.8840 2.6970 39 1 14.1401 1.3363 6.5842 40 1 13.0057 -0.4327 4.6720 41 1 11.8864 -0.6078 3.2992 42 1 4.1206 -2.1324 -0.0013 43 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299718154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:51 Heat of formation + Delta-G solvation = -2.559782 kcal Electronic energy + Delta-G solvation = -26461.234644 eV Core-core repulsion = 22507.011529 eV Total energy + Delta-G solvation = -3954.223115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.15640 -39.53148 -38.72731 -35.96641 -35.31836 -34.50062 -33.84164 -32.74186 -31.96253 -31.23623 -28.94807 -27.69382 -27.09706 -24.86750 -24.03381 -23.02485 -21.10178 -20.76229 -19.58341 -18.50895 -18.03290 -16.72907 -16.45681 -16.10928 -16.00166 -15.75021 -15.27047 -15.24569 -14.74705 -14.50618 -14.13367 -14.11393 -13.89832 -13.72471 -13.66422 -13.05444 -13.04426 -12.88086 -12.52428 -12.38285 -12.26250 -12.17514 -11.84623 -11.63317 -11.35528 -11.32397 -11.26511 -11.17920 -10.61874 -10.49128 -10.40200 -10.11412 -9.35223 -9.23753 -9.16639 -8.90565 -8.81066 -8.63134 -8.16164 -6.58929 -4.09339 0.90758 1.10671 2.81770 3.05827 3.18133 3.20307 3.37624 3.45127 3.50999 3.71714 3.95239 4.06091 4.39332 4.49414 4.49567 4.61687 4.70978 4.72580 4.82539 4.89178 5.15338 5.15718 5.21805 5.28653 5.40861 5.45338 5.47184 5.57004 5.74540 5.78360 5.79450 5.90222 6.07536 6.07829 6.27555 6.32368 6.44734 6.46860 6.66887 6.69109 7.07847 7.38964 7.76162 8.15789 8.21449 8.71575 8.77649 8.86946 9.07937 9.56979 10.46682 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.002062 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.625021 B =13575.986267 C =14270.167467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 C -0.124 4.124 4 C -0.095 4.095 5 C -0.112 4.112 6 C 0.182 3.818 7 N -0.745 5.745 8 C 0.705 3.295 9 O -0.596 6.596 10 N -0.726 5.726 11 C 0.124 3.876 12 C 0.444 3.556 13 O -0.574 6.574 14 N -0.432 5.432 15 C -0.317 4.317 16 H 0.110 0.890 17 C 0.034 3.966 18 N -0.872 5.872 19 Si 0.931 3.069 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.218 3.782 24 C 0.243 3.757 25 N -0.467 5.467 26 C -0.095 4.095 27 C -0.124 4.124 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.407 0.593 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.276 0.724 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 -5.903 -11.681 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.113 4.113 5 C -0.112 4.112 6 C 0.059 3.941 7 N -0.402 5.402 8 C 0.405 3.595 9 O -0.475 6.475 10 N -0.383 5.383 11 C -0.004 4.004 12 C 0.233 3.767 13 O -0.458 6.458 14 N -0.152 5.152 15 C -0.444 4.444 16 H 0.128 0.872 17 C -0.171 4.171 18 N -0.510 5.510 19 Si 0.757 3.243 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.090 3.910 24 C -0.076 4.076 25 N -0.147 5.147 26 C -0.113 4.113 27 C -0.142 4.142 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.231 0.769 36 H 0.244 0.756 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.148 0.852 41 H 0.106 0.894 42 H 0.143 0.857 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.703 -4.242 -12.573 22.124 hybrid contribution -0.113 -0.410 1.695 1.748 sum -17.816 -4.652 -10.878 21.387 Atomic orbital electron populations 1.20817 0.91194 1.02911 1.02371 1.19998 0.96155 0.93280 0.98741 1.21053 0.94120 0.97636 1.01373 1.21135 0.94169 0.97756 0.98265 1.19920 0.95032 0.93553 1.02736 1.19970 0.88292 1.03075 0.82807 1.45097 1.05402 1.81241 1.08426 1.15836 0.82308 0.77975 0.83381 1.90913 1.55132 1.58354 1.43106 1.44767 1.08085 1.79101 1.06390 1.20926 0.80981 1.03244 0.95274 1.19984 0.83871 0.83810 0.89068 1.90520 1.41350 1.55259 1.58681 1.43557 1.02322 1.62934 1.06394 1.19684 0.98991 1.44861 0.80848 0.87215 1.25328 0.96627 0.94825 1.00313 1.69865 1.10706 1.31341 1.39131 0.85916 0.77704 0.79245 0.81442 1.19586 1.20953 1.19762 1.18813 0.93731 0.85451 0.92988 1.29266 0.92522 0.95438 0.90336 1.80963 1.09159 1.11723 1.12848 1.21123 0.94148 0.97705 0.98347 1.21046 0.94119 0.97614 1.01426 0.91106 0.91460 0.91462 0.85948 0.85692 0.90796 0.90835 0.76855 0.75590 0.89605 0.89927 0.91351 0.85176 0.89412 0.85684 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.00 0.36 -0.26 16 2 C -0.08 -0.62 5.88 -104.63 -0.62 -1.24 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 4 C -0.09 -0.82 9.70 -39.58 -0.38 -1.21 16 5 C -0.11 -1.02 5.25 -104.62 -0.55 -1.57 16 6 C 0.18 1.95 5.80 -5.19 -0.03 1.92 16 7 N -0.75 -9.04 5.55 -66.41 -0.37 -9.41 16 8 C 0.71 11.38 8.57 -86.92 -0.74 10.64 16 9 O -0.60 -11.58 16.34 5.29 0.09 -11.50 16 10 N -0.73 -12.02 5.53 -66.42 -0.37 -12.39 16 11 C 0.12 2.25 4.76 -5.20 -0.02 2.22 16 12 C 0.44 9.64 7.63 -10.99 -0.08 9.56 16 13 O -0.57 -13.93 15.32 5.55 0.08 -13.84 16 14 N -0.43 -9.73 2.60 -117.94 -0.31 -10.03 16 15 C -0.32 -7.85 9.32 -14.93 -0.14 -7.99 16 16 H 0.11 2.85 7.39 -52.48 -0.39 2.46 16 17 C 0.03 0.81 4.87 -17.47 -0.09 0.72 16 18 N -0.87 -21.47 9.48 55.50 0.53 -20.94 16 19 Si 0.93 19.04 29.60 -169.99 -5.03 14.01 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C 0.22 4.22 4.91 -6.83 -0.03 4.19 16 24 C 0.24 5.36 12.95 -20.72 -0.27 5.09 16 25 N -0.47 -11.20 18.55 42.20 0.78 -10.42 16 26 C -0.09 -0.80 9.70 -39.58 -0.38 -1.18 16 27 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.40 4.11 8.48 -40.82 -0.35 3.77 16 36 H 0.41 6.49 7.45 -40.82 -0.30 6.19 16 37 H 0.09 1.40 7.41 -51.93 -0.39 1.01 16 38 H 0.08 1.58 7.51 -51.93 -0.39 1.19 16 39 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 40 H 0.13 2.55 6.46 -51.93 -0.34 2.21 16 41 H 0.09 1.31 6.68 -51.93 -0.35 0.97 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -32.03 375.46 -8.11 -40.14 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.42 Total: 10.55 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: -3.75 Total: 18.18 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.27 Total: -63.19 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: 0.17 Total: -25.34 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.03 -8.11 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299718154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.581 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds