Wall clock time and date at job start Tue Mar 31 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47398 * 2 1 4 4 C 1.46497 * 120.00130 * 275.00607 * 3 2 1 5 5 C 1.50698 * 109.46934 * 276.45517 * 4 3 2 6 6 H 1.07994 * 120.00068 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00161 * 179.97438 * 5 4 3 8 8 N 1.31524 * 119.99754 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00332 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47110 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46884 * 120.00057 * 9 7 5 12 12 H 1.48495 * 109.47366 * 240.00180 * 9 7 5 13 13 S 1.65604 * 119.99976 * 94.99849 * 3 2 1 14 14 O 1.42098 * 106.40280 * 161.49950 * 13 3 2 15 15 O 1.42098 * 106.39833 * 28.58316 * 13 3 2 16 16 N 1.65598 * 107.21808 * 275.04301 * 13 3 2 17 17 C 1.46500 * 120.00066 * 94.59142 * 16 13 3 18 18 C 1.53000 * 109.47160 * 94.99538 * 17 16 13 19 19 C 1.46505 * 119.99956 * 274.58597 * 16 13 3 20 20 C 1.50699 * 109.47081 * 265.32991 * 19 16 13 21 21 C 1.39877 * 126.03589 * 84.67217 * 20 19 16 22 22 N 1.30838 * 108.19918 * 179.97438 * 21 20 19 23 23 N 1.40080 * 108.20719 * 359.97438 * 22 21 20 24 24 C 1.46500 * 126.03769 * 180.02562 * 23 22 21 25 25 C 1.34949 * 107.92555 * 359.76022 * 23 22 21 26 26 H 1.08998 * 109.47152 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47131 * 299.99455 * 1 2 3 28 28 H 1.08996 * 109.47549 * 60.00009 * 1 2 3 29 29 H 1.09005 * 109.47131 * 240.00545 * 2 1 3 30 30 H 1.08996 * 109.47549 * 119.99991 * 2 1 3 31 31 H 1.09001 * 109.47301 * 36.45313 * 4 3 2 32 32 H 1.09007 * 109.47246 * 156.45619 * 4 3 2 33 33 H 0.96998 * 119.99795 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46896 * 214.99422 * 17 16 13 35 35 H 1.09003 * 109.47182 * 334.99552 * 17 16 13 36 36 H 1.08996 * 109.47525 * 299.99889 * 18 17 16 37 37 H 1.08996 * 109.47100 * 60.00378 * 18 17 16 38 38 H 1.09009 * 109.46781 * 179.97438 * 18 17 16 39 39 H 1.09002 * 109.46711 * 25.33286 * 19 16 13 40 40 H 1.09002 * 109.46822 * 145.33458 * 19 16 13 41 41 H 1.08001 * 125.90085 * 359.97438 * 21 20 19 42 42 H 1.08996 * 109.47182 * 89.97484 * 24 23 22 43 43 H 1.09004 * 109.47068 * 209.97860 * 24 23 22 44 44 H 1.09004 * 109.46905 * 329.97561 * 24 23 22 45 45 H 1.08003 * 126.12749 * 180.23734 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4794 1.7612 -1.8999 6 1 4.1482 1.0681 -1.4114 7 6 3.8344 2.3281 -3.1056 8 7 3.0201 3.1725 -3.7003 9 14 5.4724 1.8979 -3.8938 10 1 6.1988 0.9325 -3.0303 11 1 5.2352 1.2879 -5.2267 12 1 6.2850 3.1307 -4.0511 13 16 2.4122 2.1202 1.4287 14 8 3.2340 3.2298 1.0933 15 8 2.8237 1.0879 2.3142 16 7 1.0145 2.7467 2.0582 17 6 0.2405 1.9755 3.0341 18 6 0.6371 2.4000 4.4496 19 6 0.5520 4.0721 1.6391 20 6 1.0410 5.1077 2.6186 21 6 2.2925 5.7321 2.5997 22 7 2.3477 6.5675 3.6052 23 7 1.1310 6.5014 4.2963 24 6 0.7733 7.2757 5.4874 25 6 0.3446 5.6028 3.6678 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.3467 1.8291 -1.9358 32 1 2.1180 3.1811 -1.0722 33 1 3.2700 3.5716 -4.5483 34 1 -0.8229 2.1619 2.8835 35 1 0.4454 0.9131 2.9026 36 1 1.7004 2.2136 4.6003 37 1 0.4322 3.4624 4.5812 38 1 0.0609 1.8265 5.1757 39 1 0.9437 4.2967 0.6470 40 1 -0.5376 4.0846 1.6110 41 1 3.0777 5.5552 1.8795 42 1 0.3048 8.2122 5.1848 43 1 0.0766 6.7016 6.0983 44 1 1.6724 7.4894 6.0654 45 1 -0.6597 5.3260 3.9530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336900870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:21 Heat of formation + Delta-G solvation = 7.302911 kcal Electronic energy + Delta-G solvation = -28197.561753 eV Core-core repulsion = 24379.210268 eV Total energy + Delta-G solvation = -3818.351486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08925 -36.72348 -36.55425 -35.97453 -35.03839 -33.26918 -32.62970 -31.20875 -29.93432 -29.77291 -27.20152 -26.53883 -24.68220 -23.09289 -22.55590 -21.62358 -20.97772 -20.27030 -18.21817 -17.30210 -17.01623 -16.54352 -16.23690 -15.75645 -15.39627 -14.96872 -14.45705 -14.20472 -14.07076 -13.72709 -13.66594 -13.29282 -13.17752 -12.89211 -12.83324 -12.74751 -12.40273 -12.07506 -11.99949 -11.96937 -11.85255 -11.63652 -11.30213 -11.25709 -11.05876 -10.97434 -10.85683 -10.75495 -10.47554 -10.41138 -10.32792 -9.94468 -9.70134 -9.27206 -8.90997 -8.40709 -8.31737 -7.99268 -6.03116 -4.06601 1.25567 1.96029 2.58749 2.93194 3.33461 3.41427 3.46629 3.64738 4.17932 4.47897 4.50147 4.78125 4.95123 4.97062 4.97754 5.17563 5.24131 5.29096 5.31824 5.40055 5.42524 5.49865 5.65544 5.66957 5.76397 5.76961 5.82899 5.94136 5.97084 6.04808 6.17798 6.31329 6.31681 6.40728 6.62884 6.66894 6.86317 6.91376 7.05899 7.30428 7.48094 7.69059 7.83516 7.95051 8.25497 8.96321 9.58646 11.05357 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014277 B = 0.004475 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.767947 B = 6255.848152 C = 7397.670742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.992 5.992 4 C 0.257 3.743 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.778 3.222 14 O -0.961 6.961 15 O -0.998 6.998 16 N -1.006 6.006 17 C 0.126 3.874 18 C -0.173 4.173 19 C 0.204 3.796 20 C -0.249 4.249 21 C 0.074 3.926 22 N -0.305 5.305 23 N -0.385 5.385 24 C 0.105 3.895 25 C 0.062 3.938 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.312 1.970 15.645 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.010 4.010 3 N -0.834 5.834 4 C 0.135 3.865 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.787 3.213 14 O -0.945 6.945 15 O -0.982 6.982 16 N -0.843 5.843 17 C 0.000 4.000 18 C -0.232 4.232 19 C 0.078 3.922 20 C -0.262 4.262 21 C -0.112 4.112 22 N -0.126 5.126 23 N -0.167 5.167 24 C -0.037 4.037 25 C -0.085 4.085 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.213 0.787 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.800 3.087 16.622 20.061 hybrid contribution -0.070 -0.734 -1.047 1.280 sum -10.870 2.353 15.575 19.138 Atomic orbital electron populations 1.22276 0.97265 1.01316 1.02180 1.21116 0.93028 0.83454 1.03352 1.57807 1.80985 1.21316 1.23259 1.19041 0.97223 0.91310 0.78924 1.21537 1.03277 1.26669 1.05265 0.92229 1.24911 0.97203 0.94845 0.96939 1.69928 1.36357 1.29726 1.17374 0.86501 0.83907 0.78421 0.78986 1.19669 1.21018 1.20805 1.02108 0.73329 0.73225 0.72594 1.93576 1.64185 1.52882 1.83832 1.93505 1.80539 1.58700 1.65434 1.58384 1.45299 1.25519 1.55098 1.21105 0.95812 0.95227 0.87883 1.22282 1.02317 1.01862 0.96709 1.19380 0.99103 0.78346 0.95389 1.20538 0.96537 1.06575 1.02548 1.24279 0.97980 0.92861 0.96123 1.77419 1.01667 1.24215 1.09280 1.48500 1.11605 1.32927 1.23694 1.21765 1.02069 0.95501 0.84366 1.22215 0.97669 0.93734 0.94875 0.92376 0.93209 0.91903 0.89802 0.90955 0.94870 0.94168 0.92803 0.91016 0.90442 0.92384 0.92145 0.92320 0.88893 0.90275 0.78666 0.91071 0.89877 0.89532 0.81312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.15 0.38 -1.95 16 2 C 0.12 2.02 6.40 -4.05 -0.03 2.00 16 3 N -0.99 -20.30 2.83 -115.67 -0.33 -20.62 16 4 C 0.26 6.29 5.15 -5.20 -0.03 6.26 16 5 C -0.53 -14.69 9.37 -34.44 -0.32 -15.02 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.78 5.46 -17.81 -0.10 1.68 16 8 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 S 2.78 55.36 5.97 -107.50 -0.64 54.72 16 14 O -0.96 -22.22 14.61 -57.17 -0.84 -23.06 16 15 O -1.00 -21.24 15.62 -57.17 -0.89 -22.13 16 16 N -1.01 -14.99 2.85 -115.66 -0.33 -15.32 16 17 C 0.13 1.50 5.27 -4.04 -0.02 1.48 16 18 C -0.17 -2.00 10.02 37.16 0.37 -1.63 16 19 C 0.20 2.80 5.84 -5.19 -0.03 2.77 16 20 C -0.25 -3.52 5.09 -105.05 -0.53 -4.05 16 21 C 0.07 1.25 11.49 -17.36 -0.20 1.05 16 22 N -0.30 -4.93 12.58 30.63 0.39 -4.54 16 23 N -0.39 -4.73 4.01 -68.16 -0.27 -5.00 16 24 C 0.10 0.76 11.47 59.85 0.69 1.45 16 25 C 0.06 0.70 9.26 -17.22 -0.16 0.54 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.61 6.74 -51.93 -0.35 0.26 16 28 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 30 H 0.07 1.20 6.98 -51.93 -0.36 0.83 16 31 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 32 H 0.04 1.04 7.27 -51.93 -0.38 0.66 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 35 H 0.08 0.95 6.98 -51.93 -0.36 0.59 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.66 5.26 -51.93 -0.27 0.38 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 39 H 0.09 1.44 7.60 -51.93 -0.39 1.05 16 40 H 0.08 0.82 8.00 -51.93 -0.42 0.41 16 41 H 0.20 3.57 7.10 -52.49 -0.37 3.19 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.17 1.26 8.02 -52.48 -0.42 0.84 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -35.00 378.96 -8.56 -43.55 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.09 Total: 0.38 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 0.02 Total: -5.43 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: 0.19 Total: -70.57 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.73 Total: -45.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 55.36 SS G_CDS: -0.64 Total: 54.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.00 -8.56 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336900870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.858 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds