Wall clock time and date at job start Tue Mar 31 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47191 * 2 1 4 4 C 1.46511 * 119.99737 * 275.00116 * 3 2 1 5 5 C 1.50696 * 109.46986 * 280.18388 * 4 3 2 6 6 H 1.08002 * 120.00081 * 3.93935 * 5 4 3 7 7 C 1.37882 * 119.99691 * 183.93660 * 5 4 3 8 8 N 1.31508 * 119.99961 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99762 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47523 * 59.99863 * 9 7 5 11 11 H 1.48500 * 109.47206 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47047 * 299.99669 * 9 7 5 13 13 S 1.65595 * 120.00140 * 94.99950 * 3 2 1 14 14 O 1.42092 * 106.40261 * 330.14247 * 13 3 2 15 15 O 1.42105 * 106.40259 * 197.22253 * 13 3 2 16 16 N 1.65599 * 107.21630 * 83.68190 * 13 3 2 17 17 C 1.46506 * 120.00064 * 65.53918 * 16 13 3 18 18 C 1.53000 * 109.47528 * 165.61112 * 17 16 13 19 19 H 1.09000 * 109.46747 * 304.99878 * 18 17 16 20 20 C 1.53005 * 109.46763 * 64.99638 * 18 17 16 21 21 C 1.52996 * 109.47281 * 184.99667 * 18 17 16 22 22 N 1.46493 * 109.47012 * 175.00090 * 21 18 17 23 23 C 1.34945 * 126.03969 * 125.00173 * 22 21 18 24 24 C 1.35320 * 107.74914 * 179.97438 * 23 22 21 25 25 C 1.39869 * 107.91762 * 359.97438 * 24 23 22 26 26 N 1.30841 * 108.20406 * 359.74177 * 25 24 23 27 27 H 1.08998 * 109.46560 * 300.00409 * 1 2 3 28 28 H 1.08997 * 109.47016 * 59.99864 * 1 2 3 29 29 H 1.08994 * 109.46644 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47230 * 239.99933 * 2 1 3 31 31 H 1.08998 * 109.47660 * 119.99747 * 2 1 3 32 32 H 1.09002 * 109.46880 * 40.18888 * 4 3 2 33 33 H 1.08994 * 109.46946 * 160.18477 * 4 3 2 34 34 H 0.97005 * 119.99664 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00427 * 245.80751 * 16 13 3 36 36 H 1.09005 * 109.46733 * 285.60923 * 17 16 13 37 37 H 1.08994 * 109.47271 * 45.60497 * 17 16 13 38 38 H 1.08994 * 109.46976 * 299.99876 * 20 18 17 39 39 H 1.09000 * 109.47293 * 60.00575 * 20 18 17 40 40 H 1.09005 * 109.46733 * 180.02562 * 20 18 17 41 41 H 1.09006 * 109.47070 * 294.99930 * 21 18 17 42 42 H 1.08997 * 109.47065 * 54.99813 * 21 18 17 43 43 H 1.08005 * 126.12550 * 359.97438 * 23 22 21 44 44 H 1.07996 * 126.03729 * 179.97438 * 24 23 22 45 45 H 1.07998 * 125.89490 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2640 5 6 3.4368 1.6923 -1.9444 6 1 4.0488 0.9135 -1.5138 7 6 3.8252 2.3055 -3.1167 8 7 3.0802 3.2540 -3.6407 9 14 5.4096 1.7888 -3.9605 10 1 5.3342 0.3491 -4.3166 11 1 5.5996 2.5948 -5.1931 12 1 6.5551 2.0122 -3.0421 13 16 2.4122 2.1202 1.4286 14 8 1.5776 1.5423 2.4228 15 8 2.4510 3.5154 1.1614 16 7 3.9623 1.6722 1.8012 17 6 5.0732 2.0962 0.9452 18 6 6.3969 1.8709 1.6785 19 1 6.3705 2.3816 2.6411 20 6 6.6073 0.3719 1.9020 21 6 7.5472 2.4275 0.8372 22 7 8.7993 2.3199 1.5900 23 6 9.9269 1.7076 1.1721 24 6 10.8505 1.8293 2.1535 25 6 10.2676 2.5410 3.2071 26 7 9.0399 2.8407 2.8680 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3112 1.8797 -1.9107 33 1 2.1846 3.1801 -1.0656 34 1 3.3533 3.6851 -4.4657 35 1 4.1345 1.1258 2.5839 36 1 5.0645 1.5140 0.0238 37 1 4.9651 3.1544 0.7073 38 1 5.7879 -0.0246 2.5014 39 1 6.6338 -0.1388 0.9394 40 1 7.5503 0.2114 2.4248 41 1 7.6295 1.8574 -0.0882 42 1 7.3528 3.4741 0.6031 43 1 10.0670 1.2095 0.2240 44 1 11.8594 1.4449 2.1278 45 1 10.7490 2.8017 4.1380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336918409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:35 Heat of formation + Delta-G solvation = -8.271514 kcal Electronic energy + Delta-G solvation = -27517.788383 eV Core-core repulsion = 23698.761539 eV Total energy + Delta-G solvation = -3819.026843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17358 -37.27558 -36.60536 -36.04192 -35.20382 -33.62725 -32.77280 -30.99830 -29.95340 -29.94323 -26.91982 -26.66698 -25.19471 -23.20258 -21.73937 -21.45344 -21.04330 -19.93740 -18.81633 -17.35838 -17.18073 -16.82322 -16.47926 -15.71602 -15.59490 -15.18395 -14.62082 -14.47958 -14.21566 -13.88695 -13.57500 -13.34737 -13.29424 -12.92037 -12.90122 -12.78459 -12.43171 -12.09683 -12.02268 -11.75054 -11.71127 -11.45837 -11.32985 -11.30266 -11.12132 -11.07303 -11.03298 -10.83357 -10.60888 -10.53541 -10.40901 -10.08348 -9.85833 -9.45063 -9.03714 -8.63057 -8.57104 -8.09514 -6.17938 -4.24878 1.27983 1.88558 2.49071 2.80547 3.13599 3.21624 3.24218 3.52714 4.15245 4.26526 4.41822 4.75303 4.79234 4.87536 4.94479 5.13463 5.15267 5.24999 5.38817 5.42282 5.51428 5.59284 5.66791 5.72132 5.76003 5.82094 5.91952 5.94908 5.99225 6.02433 6.12198 6.25543 6.32485 6.44441 6.61068 6.65884 6.69422 6.97843 7.25148 7.34334 7.41683 7.65335 7.68215 7.79332 8.09835 8.78978 9.40151 10.90013 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.004600 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.786237 B = 6085.124579 C = 7889.679851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 S 2.786 3.214 14 O -1.000 7.000 15 O -0.978 6.978 16 N -1.129 6.129 17 C 0.125 3.875 18 C -0.109 4.109 19 H 0.090 0.910 20 C -0.144 4.144 21 C 0.134 3.866 22 N -0.361 5.361 23 C 0.055 3.945 24 C -0.282 4.282 25 C 0.037 3.963 26 N -0.293 5.293 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.171 0.829 44 H 0.143 0.857 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -6.512 8.359 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.793 3.207 14 O -0.985 6.985 15 O -0.962 6.962 16 N -0.888 5.888 17 C -0.002 4.002 18 C -0.129 4.129 19 H 0.108 0.892 20 C -0.202 4.202 21 C 0.012 3.988 22 N -0.143 5.143 23 C -0.092 4.092 24 C -0.311 4.311 25 C -0.149 4.149 26 N -0.115 5.115 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.188 0.812 44 H 0.161 0.839 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.949 -5.066 8.787 12.886 hybrid contribution 2.083 -1.210 -0.870 2.561 sum 10.032 -6.276 7.917 14.237 Atomic orbital electron populations 1.22212 0.96963 1.01320 1.02509 1.20939 0.93666 0.82879 1.01919 1.57728 1.78586 1.22946 1.24084 1.19212 0.97195 0.92587 0.78912 1.21478 1.07399 1.20842 1.08215 0.91884 1.24951 0.97024 0.94781 0.97036 1.69917 1.37891 1.24218 1.20312 0.86701 0.83624 0.78658 0.79213 1.20234 1.21188 1.20165 1.01737 0.72569 0.73726 0.72631 1.93549 1.65468 1.79782 1.59653 1.93579 1.86502 1.30900 1.85173 1.55986 1.25071 1.69651 1.38064 1.21332 0.83842 1.01808 0.93238 1.21620 0.93393 0.97494 1.00416 0.89161 1.21813 1.01504 0.94769 1.02108 1.21852 0.79906 1.03707 0.93341 1.48771 1.10790 1.41569 1.13164 1.22605 0.87136 0.98912 1.00585 1.21462 1.01772 1.12231 0.95674 1.23847 0.92227 0.98770 1.00013 1.77364 1.17863 1.20942 0.95292 0.92471 0.92092 0.92472 0.90189 0.92256 0.94805 0.92614 0.92462 0.76158 0.89251 0.89983 0.92171 0.92143 0.92933 0.87927 0.88916 0.81157 0.83881 0.80398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.13 2.20 6.02 -4.04 -0.02 2.18 16 3 N -0.99 -19.41 2.84 -115.66 -0.33 -19.74 16 4 C 0.24 5.71 5.46 -5.19 -0.03 5.68 16 5 C -0.54 -12.96 8.51 -34.44 -0.29 -13.25 16 6 H 0.06 1.42 6.47 -52.49 -0.34 1.08 16 7 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 9 Si 0.89 19.05 29.54 -169.99 -5.02 14.03 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 13 S 2.79 53.47 6.07 -107.50 -0.65 52.82 16 14 O -1.00 -20.05 17.17 -57.17 -0.98 -21.03 16 15 O -0.98 -22.38 16.00 -57.17 -0.92 -23.29 16 16 N -1.13 -17.40 5.93 -10.61 -0.06 -17.46 16 17 C 0.12 1.91 5.61 -4.04 -0.02 1.88 16 18 C -0.11 -1.38 2.58 -90.62 -0.23 -1.61 16 19 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 20 C -0.14 -1.65 8.95 37.16 0.33 -1.32 16 21 C 0.13 1.63 5.90 -4.05 -0.02 1.61 16 22 N -0.36 -4.52 3.13 -61.37 -0.19 -4.71 16 23 C 0.05 0.58 11.45 -17.22 -0.20 0.38 16 24 C -0.28 -2.87 10.80 -40.01 -0.43 -3.30 16 25 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 26 N -0.29 -4.02 12.35 30.62 0.38 -3.64 16 27 H 0.06 0.93 7.97 -51.93 -0.41 0.52 16 28 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 31 H 0.06 0.87 7.78 -51.93 -0.40 0.46 16 32 H 0.03 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.06 1.47 6.77 -51.93 -0.35 1.12 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 35 H 0.41 5.24 7.41 -34.47 -0.26 4.99 16 36 H 0.09 1.45 5.86 -51.93 -0.30 1.15 16 37 H 0.08 1.39 7.75 -51.93 -0.40 0.99 16 38 H 0.06 0.65 6.90 -51.93 -0.36 0.29 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.62 7.75 -51.93 -0.40 0.21 16 41 H 0.10 1.12 8.07 -51.93 -0.42 0.70 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 44 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 45 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -31.61 382.65 -9.12 -40.73 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.00 Total: 8.19 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.85 Total: -8.24 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: 0.53 Total: -68.97 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.90 Total: -44.33 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Atomic # 16 Polarization: 53.47 SS G_CDS: -0.65 Total: 52.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.61 -9.12 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336918409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.460 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds