Wall clock time and date at job start Tue Mar 31 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47445 * 2 1 4 4 C 1.46501 * 120.00043 * 275.00090 * 3 2 1 5 5 C 1.50695 * 109.46945 * 275.18921 * 4 3 2 6 6 H 1.07999 * 120.00146 * 4.94204 * 5 4 3 7 7 C 1.37885 * 119.99578 * 184.93667 * 5 4 3 8 8 N 1.31507 * 120.00313 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99518 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47168 * 60.00441 * 9 7 5 11 11 H 1.48500 * 109.46843 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47293 * 300.00294 * 9 7 5 13 13 S 1.65608 * 119.99863 * 94.99951 * 3 2 1 14 14 O 1.42099 * 106.40076 * 342.15011 * 13 3 2 15 15 O 1.42098 * 106.39904 * 209.22818 * 13 3 2 16 16 N 1.65600 * 107.21527 * 95.68925 * 13 3 2 17 17 C 1.46494 * 120.00146 * 294.98170 * 16 13 3 18 18 H 1.09003 * 109.47262 * 23.81185 * 17 16 13 19 19 C 1.52993 * 109.47331 * 263.80736 * 17 16 13 20 20 C 1.50710 * 109.46875 * 143.81021 * 17 16 13 21 21 C 1.39868 * 126.04103 * 24.69382 * 20 17 16 22 22 N 1.30834 * 108.20356 * 179.81819 * 21 20 17 23 23 N 1.40093 * 108.20407 * 0.43681 * 22 21 20 24 24 C 1.46499 * 126.03748 * 179.69711 * 23 22 21 25 25 C 1.34949 * 107.92094 * 359.71914 * 23 22 21 26 26 C 1.50711 * 126.12272 * 180.02562 * 25 23 22 27 27 H 1.09000 * 109.46775 * 300.00337 * 1 2 3 28 28 H 1.09008 * 109.47142 * 59.99403 * 1 2 3 29 29 H 1.08995 * 109.47446 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47379 * 240.00119 * 2 1 3 31 31 H 1.08997 * 109.47223 * 120.00047 * 2 1 3 32 32 H 1.08996 * 109.46922 * 35.19395 * 4 3 2 33 33 H 1.08998 * 109.46774 * 155.18904 * 4 3 2 34 34 H 0.96999 * 119.99864 * 179.97438 * 8 7 5 35 35 H 0.97008 * 119.99683 * 114.98570 * 16 13 3 36 36 H 1.09000 * 109.47134 * 55.16378 * 19 17 16 37 37 H 1.09005 * 109.47509 * 175.16143 * 19 17 16 38 38 H 1.08997 * 109.47354 * 295.16492 * 19 17 16 39 39 H 1.08001 * 125.89692 * 359.97438 * 21 20 17 40 40 H 1.08997 * 109.46993 * 270.02558 * 24 23 22 41 41 H 1.09007 * 109.47017 * 30.02845 * 24 23 22 42 42 H 1.09005 * 109.46932 * 150.02221 * 24 23 22 43 43 H 1.08998 * 109.46724 * 269.97947 * 26 25 23 44 44 H 1.08997 * 109.46433 * 29.97888 * 26 25 23 45 45 H 1.08994 * 109.46656 * 149.97622 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4928 1.7851 -1.8846 6 1 4.1351 1.0457 -1.4294 7 6 3.8939 2.4330 -3.0338 8 7 3.1120 3.3336 -3.5879 9 14 5.5479 2.0314 -3.8035 10 1 5.5869 0.5929 -4.1705 11 1 5.7404 2.8579 -5.0222 12 1 6.6308 2.3235 -2.8304 13 16 2.4123 2.1202 1.4288 14 8 1.7939 1.3597 2.4576 15 8 2.1771 3.5088 1.2404 16 7 4.0460 1.9464 1.6363 17 6 4.6227 0.6130 1.8250 18 1 3.9566 -0.1351 1.3953 19 6 4.7988 0.3405 3.3202 20 6 5.9636 0.5443 1.1405 21 6 6.8001 1.6291 0.8582 22 7 7.8730 1.1741 0.2636 23 7 7.7485 -0.2158 0.1396 24 6 8.7264 -1.1173 -0.4745 25 6 6.5684 -0.5773 0.6853 26 6 6.0223 -1.9793 0.7726 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3598 1.8123 -1.9440 33 1 2.0957 3.1803 -1.0751 34 1 3.3943 3.7896 -4.3961 35 1 4.6211 2.7276 1.6330 36 1 3.8442 0.4745 3.8289 37 1 5.1469 -0.6824 3.4646 38 1 5.5308 1.0349 3.7324 39 1 6.5966 2.6635 1.0930 40 1 8.5099 -1.2181 -1.5380 41 1 9.7287 -0.7089 -0.3448 42 1 8.6682 -2.0957 0.0025 43 1 5.4315 -2.1951 -0.1176 44 1 6.8482 -2.6872 0.8410 45 1 5.3923 -2.0693 1.6575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336919306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:44 Heat of formation + Delta-G solvation = -5.840172 kcal Electronic energy + Delta-G solvation = -28632.606104 eV Core-core repulsion = 24813.684691 eV Total energy + Delta-G solvation = -3818.921412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17043 -36.73373 -36.05607 -35.92620 -35.14363 -33.19858 -32.66528 -31.81427 -29.91067 -29.19298 -26.81012 -26.57195 -26.51232 -23.14436 -22.68368 -21.66098 -20.61199 -19.47072 -18.53553 -17.04677 -16.82492 -16.67747 -16.23071 -15.57784 -15.52711 -14.83745 -14.33955 -14.26732 -13.94820 -13.74675 -13.49143 -13.31844 -13.10035 -12.88246 -12.81444 -12.55457 -12.32591 -12.10362 -12.05367 -11.99853 -11.86569 -11.62728 -11.44156 -11.36723 -11.30066 -11.00467 -10.96767 -10.92298 -10.46530 -10.37852 -10.24774 -10.03816 -9.71785 -9.17971 -9.04737 -8.44107 -8.10433 -7.97917 -6.06003 -4.11041 1.38325 2.03623 2.66073 3.01861 3.28086 3.34009 3.39685 3.60329 4.22882 4.41733 4.55365 4.72356 5.00091 5.04209 5.09533 5.13317 5.27983 5.30053 5.34564 5.41126 5.44478 5.48214 5.56982 5.73377 5.75807 5.79841 5.84654 5.91348 6.03041 6.12853 6.21558 6.31702 6.39881 6.57415 6.67388 6.71221 6.84699 7.17821 7.30767 7.45730 7.54430 7.73127 7.91877 7.92746 8.21532 8.94750 9.55019 11.01969 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009273 B = 0.007272 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.658760 B = 3849.683613 C = 5565.104481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 N -0.991 5.991 4 C 0.247 3.753 5 C -0.530 4.530 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.272 1.272 13 S 2.787 3.213 14 O -0.999 6.999 15 O -0.983 6.983 16 N -1.115 6.115 17 C 0.243 3.757 18 H 0.082 0.918 19 C -0.163 4.163 20 C -0.230 4.230 21 C 0.072 3.928 22 N -0.297 5.297 23 N -0.376 5.376 24 C 0.103 3.897 25 C 0.088 3.912 26 C -0.094 4.094 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.411 0.589 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.179 0.821 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -11.957 9.629 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.833 5.833 4 C 0.125 3.875 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.197 1.197 13 S 2.795 3.205 14 O -0.983 6.983 15 O -0.967 6.967 16 N -0.873 5.873 17 C 0.134 3.866 18 H 0.100 0.900 19 C -0.223 4.223 20 C -0.243 4.243 21 C -0.114 4.114 22 N -0.118 5.118 23 N -0.159 5.159 24 C -0.039 4.039 25 C -0.039 4.039 26 C -0.153 4.153 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.196 0.804 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.536 -11.326 9.462 16.141 hybrid contribution 0.842 -0.155 -0.816 1.183 sum 7.378 -11.481 8.645 16.155 Atomic orbital electron populations 1.22199 0.96988 1.01326 1.02339 1.21014 0.93691 0.83162 1.02003 1.57710 1.78578 1.22740 1.24244 1.19156 0.97058 0.92274 0.78979 1.21502 1.02985 1.22887 1.09611 0.91895 1.24899 0.96906 0.94872 0.96987 1.69921 1.36802 1.25605 1.20647 0.86716 0.84957 0.77965 0.78798 1.20726 1.21444 1.19672 1.01685 0.72769 0.73062 0.73001 1.93534 1.75138 1.73191 1.56409 1.93585 1.84197 1.32446 1.86482 1.55982 1.28289 1.13390 1.89628 1.18649 0.90438 0.83768 0.93768 0.90035 1.22312 1.02770 1.01452 0.95720 1.19787 0.99936 0.91969 1.12583 1.23501 0.91234 0.99742 0.96937 1.77363 1.23662 0.87827 1.22927 1.48302 1.15326 1.05743 1.46553 1.21766 0.91941 0.91837 0.98337 1.20666 0.88104 0.96939 0.98237 1.20502 1.01150 0.89439 1.04190 0.92777 0.92080 0.92378 0.90380 0.91765 0.94779 0.93102 0.92684 0.75550 0.91165 0.92144 0.92273 0.80435 0.90965 0.89553 0.89788 0.89787 0.91367 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.13 2.15 5.87 -4.04 -0.02 2.12 16 3 N -0.99 -20.04 2.83 -115.67 -0.33 -20.36 16 4 C 0.25 6.09 5.45 -5.20 -0.03 6.06 16 5 C -0.53 -13.84 9.38 -34.44 -0.32 -14.17 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 S 2.79 54.76 6.01 -107.50 -0.65 54.12 16 14 O -1.00 -19.57 16.26 -57.17 -0.93 -20.50 16 15 O -0.98 -22.93 16.82 -57.17 -0.96 -23.89 16 16 N -1.12 -18.57 5.44 -5.88 -0.03 -18.60 16 17 C 0.24 3.54 2.81 -69.08 -0.19 3.34 16 18 H 0.08 1.17 6.77 -51.93 -0.35 0.81 16 19 C -0.16 -2.01 9.50 37.15 0.35 -1.65 16 20 C -0.23 -3.53 5.21 -105.05 -0.55 -4.07 16 21 C 0.07 1.20 11.26 -17.37 -0.20 1.01 16 22 N -0.30 -5.22 12.58 30.62 0.39 -4.83 16 23 N -0.38 -5.53 4.01 -63.88 -0.26 -5.78 16 24 C 0.10 1.03 11.27 59.85 0.67 1.70 16 25 C 0.09 1.23 6.93 -82.26 -0.57 0.66 16 26 C -0.09 -0.91 9.80 36.01 0.35 -0.55 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 31 H 0.06 0.95 6.60 -51.93 -0.34 0.60 16 32 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.05 1.40 6.99 -51.93 -0.36 1.04 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.41 6.40 7.42 -34.47 -0.26 6.15 16 36 H 0.07 0.92 7.72 -51.93 -0.40 0.52 16 37 H 0.06 0.61 7.73 -51.93 -0.40 0.21 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.18 2.64 7.16 -52.49 -0.38 2.26 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 42 H 0.08 0.56 7.05 -51.93 -0.37 0.20 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.49 7.08 -51.93 -0.37 0.12 16 45 H 0.09 0.71 7.47 -51.93 -0.39 0.32 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -35.15 382.62 -8.47 -43.61 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.96 Total: 5.02 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.22 Total: -6.06 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: 0.51 Total: -74.68 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.89 Total: -44.39 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.65 Total: 54.12 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.15 -8.47 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336919306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.771 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds