Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47175 * 2 1 4 4 C 1.46501 * 119.99993 * 274.99648 * 3 2 1 5 5 C 1.50694 * 109.47461 * 292.58835 * 4 3 2 6 6 H 1.07999 * 120.00009 * 4.80395 * 5 4 3 7 7 C 1.37878 * 120.00330 * 184.81363 * 5 4 3 8 8 N 1.31519 * 119.99439 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00284 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47114 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46900 * 119.99670 * 9 7 5 12 12 H 1.48502 * 109.47083 * 239.99479 * 9 7 5 13 13 S 1.65605 * 120.00252 * 95.00091 * 3 2 1 14 14 O 1.42094 * 106.40290 * 148.38600 * 13 3 2 15 15 O 1.42104 * 106.39894 * 15.46868 * 13 3 2 16 16 N 1.65597 * 107.21714 * 261.93155 * 13 3 2 17 17 C 1.46495 * 120.00469 * 68.21092 * 16 13 3 18 18 H 1.08999 * 109.47041 * 3.70898 * 17 16 13 19 19 C 1.52999 * 109.46926 * 243.71522 * 17 16 13 20 20 C 1.50694 * 109.47415 * 123.71431 * 17 16 13 21 21 C 1.35313 * 126.03862 * 24.68812 * 20 17 16 22 22 N 1.34953 * 107.74706 * 179.87480 * 21 20 17 23 23 C 1.46495 * 126.03904 * 180.14768 * 22 21 20 24 24 N 1.40087 * 107.92081 * 0.39282 * 22 21 20 25 25 C 1.30834 * 108.21049 * 359.75469 * 24 22 21 26 26 C 1.50697 * 125.90290 * 179.97438 * 25 24 22 27 27 H 1.09006 * 109.47278 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47030 * 300.00204 * 1 2 3 29 29 H 1.08996 * 109.46902 * 59.99991 * 1 2 3 30 30 H 1.09001 * 109.47030 * 239.99796 * 2 1 3 31 31 H 1.09005 * 109.46746 * 120.00208 * 2 1 3 32 32 H 1.08998 * 109.47133 * 52.58974 * 4 3 2 33 33 H 1.09003 * 109.46907 * 172.58347 * 4 3 2 34 34 H 0.97001 * 119.99186 * 180.02562 * 8 7 5 35 35 H 0.97002 * 119.99573 * 247.93660 * 16 13 3 36 36 H 1.08995 * 109.47358 * 63.41396 * 19 17 16 37 37 H 1.09009 * 109.46963 * 183.41014 * 19 17 16 38 38 H 1.08998 * 109.47138 * 303.40704 * 19 17 16 39 39 H 1.08001 * 126.12684 * 0.02816 * 21 20 17 40 40 H 1.09002 * 109.47412 * 270.26007 * 23 22 21 41 41 H 1.08997 * 109.47279 * 30.26213 * 23 22 21 42 42 H 1.09000 * 109.46829 * 150.26171 * 23 22 21 43 43 H 1.09001 * 109.46766 * 270.02415 * 26 25 24 44 44 H 1.08996 * 109.47362 * 30.02359 * 26 25 24 45 45 H 1.09001 * 109.47452 * 150.02956 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.2584 1.4848 -2.0834 6 1 3.7467 0.5860 -1.7368 7 6 3.6418 2.0616 -3.2756 8 7 3.0470 3.1560 -3.6978 9 14 5.0060 1.2888 -4.2911 10 1 5.5087 0.0735 -3.6015 11 1 4.4777 0.9169 -5.6282 12 1 6.1163 2.2619 -4.4507 13 16 2.4122 2.1202 1.4287 14 8 3.4662 3.0266 1.1343 15 8 2.5239 1.0867 2.3976 16 7 1.1129 3.0435 1.8775 17 6 -0.1377 2.3990 2.2857 18 1 -0.0032 1.3173 2.2940 19 6 -1.2471 2.7672 1.2984 20 6 -0.5177 2.8686 3.6662 21 6 -0.1443 4.0353 4.2410 22 7 -0.6919 4.0803 5.4737 23 6 -0.5470 5.1701 6.4418 24 7 -1.4186 2.8982 5.6659 25 6 -1.3136 2.1728 4.5822 26 6 -1.9411 0.8210 4.3594 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.2205 2.0594 -1.8173 33 1 2.4045 3.1503 -1.0582 34 1 3.3166 3.5616 -4.5367 35 1 1.1812 4.0111 1.8739 36 1 -1.0006 2.3746 0.3119 37 1 -2.1906 2.3374 1.6352 38 1 -1.3405 3.8519 1.2449 39 1 0.4782 4.7955 3.7927 40 1 0.3271 4.9872 7.0668 41 1 -0.4229 6.1138 5.9108 42 1 -1.4375 5.2202 7.0684 43 1 -1.2537 0.0424 4.6903 44 1 -2.8684 0.7526 4.9280 45 1 -2.1548 0.6899 3.2986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337073655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = -2.546645 kcal Electronic energy + Delta-G solvation = -27819.827834 eV Core-core repulsion = 24001.049240 eV Total energy + Delta-G solvation = -3818.778594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.38840 -36.90012 -36.29542 -35.89993 -35.16971 -33.88135 -32.64163 -30.34696 -30.16516 -29.75815 -28.62301 -26.60618 -25.63843 -23.23959 -22.86352 -21.68464 -20.65319 -19.71424 -18.65384 -17.52298 -17.02151 -16.55247 -16.12541 -15.78687 -15.63115 -15.24304 -14.52926 -14.32939 -14.02925 -13.79614 -13.62492 -13.35006 -13.28961 -13.01586 -12.84230 -12.64020 -12.28494 -12.16900 -12.07145 -12.02470 -11.86383 -11.61972 -11.48706 -11.43425 -11.34069 -11.14711 -10.99093 -10.82156 -10.63618 -10.52291 -10.26865 -10.01255 -9.66367 -9.38301 -9.27823 -8.47507 -8.38452 -8.01243 -6.07246 -4.10618 1.25581 1.79792 2.39519 2.66033 3.30074 3.38034 3.42192 3.54230 4.15697 4.32283 4.43538 4.68137 4.85751 4.91175 4.94208 5.02432 5.14899 5.19012 5.25877 5.28080 5.37960 5.44834 5.56459 5.59125 5.73411 5.76416 5.80085 5.80928 5.89555 6.01537 6.04903 6.23328 6.38472 6.40388 6.61621 6.68156 6.73807 6.90742 7.16636 7.30690 7.43969 7.64009 7.67202 7.91459 8.23086 8.92715 9.54475 11.01689 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.003518 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.112614 B = 7957.148835 C = 8367.107196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.116 3.884 3 N -0.989 5.989 4 C 0.256 3.744 5 C -0.527 4.527 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.778 3.222 14 O -0.973 6.973 15 O -0.995 6.995 16 N -1.126 6.126 17 C 0.230 3.770 18 H 0.099 0.901 19 C -0.163 4.163 20 C -0.235 4.235 21 C 0.066 3.934 22 N -0.380 5.380 23 C 0.104 3.896 24 N -0.299 5.299 25 C 0.085 3.915 26 C -0.078 4.078 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.409 0.591 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.171 0.829 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 0.942 14.954 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.010 4.010 3 N -0.831 5.831 4 C 0.134 3.866 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.786 3.214 14 O -0.957 6.957 15 O -0.979 6.979 16 N -0.883 5.883 17 C 0.122 3.878 18 H 0.116 0.884 19 C -0.222 4.222 20 C -0.248 4.248 21 C -0.080 4.080 22 N -0.162 5.162 23 C -0.038 4.038 24 N -0.122 5.122 25 C -0.082 4.082 26 C -0.136 4.136 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.241 0.759 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.189 0.811 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.596 1.010 16.569 20.249 hybrid contribution 0.881 0.409 -1.648 1.913 sum -10.714 1.419 14.921 18.424 Atomic orbital electron populations 1.22502 0.97466 1.01694 1.02244 1.21147 0.93109 0.83221 1.03563 1.57689 1.81000 1.21481 1.22971 1.19032 0.97006 0.91636 0.78916 1.21478 1.19014 1.11327 1.04801 0.91911 1.24951 0.96689 0.94877 0.97620 1.69934 1.41943 1.19543 1.21934 0.86462 0.81887 0.79381 0.79813 1.19662 1.21008 1.20898 1.02018 0.73171 0.73163 0.73055 1.93626 1.51957 1.65251 1.84856 1.93529 1.86228 1.57879 1.60250 1.56273 1.28903 1.19461 1.83659 1.18918 0.83701 0.96850 0.88380 0.88382 1.22306 0.97769 1.02458 0.99644 1.20200 1.08443 0.96966 0.99189 1.22187 0.99544 0.99692 0.86549 1.48295 1.39546 1.15745 1.12573 1.21824 1.03591 0.86475 0.91877 1.77259 1.18054 0.94270 1.22659 1.22179 0.97828 0.97173 0.91020 1.20250 1.00393 0.89992 1.02987 0.92171 0.92759 0.91733 0.89415 0.90695 0.95536 0.93861 0.92777 0.75857 0.90830 0.91782 0.92171 0.81142 0.90866 0.89509 0.89433 0.90139 0.90894 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.42 37.16 0.35 -2.08 16 2 C 0.12 1.99 6.25 -4.05 -0.03 1.96 16 3 N -0.99 -19.83 2.92 -115.67 -0.34 -20.16 16 4 C 0.26 6.20 5.45 -5.20 -0.03 6.17 16 5 C -0.53 -14.34 8.75 -34.44 -0.30 -14.64 16 6 H 0.06 1.69 7.61 -52.49 -0.40 1.30 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 9 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 S 2.78 53.92 6.01 -107.50 -0.65 53.27 16 14 O -0.97 -22.83 17.09 -57.17 -0.98 -23.80 16 15 O -1.00 -20.44 15.94 -57.17 -0.91 -21.35 16 16 N -1.13 -16.48 5.13 -5.89 -0.03 -16.51 16 17 C 0.23 2.97 2.57 -69.09 -0.18 2.80 16 18 H 0.10 1.31 5.34 -51.93 -0.28 1.03 16 19 C -0.16 -1.83 8.69 37.16 0.32 -1.51 16 20 C -0.23 -3.03 5.23 -105.05 -0.55 -3.58 16 21 C 0.07 0.78 10.80 -17.22 -0.19 0.59 16 22 N -0.38 -4.40 4.01 -68.17 -0.27 -4.67 16 23 C 0.10 0.72 11.47 59.84 0.69 1.41 16 24 N -0.30 -4.07 12.58 33.67 0.42 -3.64 16 25 C 0.08 1.09 7.22 -82.41 -0.59 0.50 16 26 C -0.08 -0.75 10.21 36.00 0.37 -0.38 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.66 3.60 -51.93 -0.19 0.47 16 29 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 30 H 0.09 1.57 7.45 -51.93 -0.39 1.19 16 31 H 0.07 1.23 6.87 -51.93 -0.36 0.87 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.04 1.13 7.30 -51.93 -0.38 0.75 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.41 5.15 8.16 -34.46 -0.28 4.87 16 36 H 0.07 0.89 6.69 -51.93 -0.35 0.54 16 37 H 0.06 0.62 7.92 -51.92 -0.41 0.20 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.17 1.56 7.44 -52.49 -0.39 1.17 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.65 7.74 -51.93 -0.40 0.25 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -35.90 376.93 -8.34 -44.24 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.75 Total: 2.67 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.23 Total: -7.17 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: 0.52 Total: -69.93 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.89 Total: -45.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.65 Total: 53.27 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.90 -8.34 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337073655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.692 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds