Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.46758 * 2 1 4 4 C 1.46498 * 120.00183 * 274.99601 * 3 2 1 5 5 C 1.50694 * 109.47420 * 279.45653 * 4 3 2 6 6 H 1.08006 * 120.00158 * 359.30229 * 5 4 3 7 7 C 1.37878 * 120.00272 * 179.29875 * 5 4 3 8 8 N 1.31514 * 119.99723 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00354 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46830 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47235 * 119.99405 * 9 7 5 12 12 H 1.48496 * 109.46906 * 239.99882 * 9 7 5 13 13 S 1.65603 * 119.99862 * 95.00314 * 3 2 1 14 14 O 1.42104 * 106.40073 * 330.28089 * 13 3 2 15 15 O 1.42101 * 106.40066 * 197.36286 * 13 3 2 16 16 N 1.65596 * 107.21924 * 83.82431 * 13 3 2 17 17 C 1.46493 * 120.00359 * 66.29314 * 16 13 3 18 18 C 1.50699 * 109.47472 * 163.31274 * 17 16 13 19 19 C 1.39870 * 126.04116 * 90.02283 * 18 17 16 20 20 C 1.50702 * 125.89720 * 359.97438 * 19 18 17 21 21 N 1.30838 * 108.20194 * 179.97438 * 19 18 17 22 22 N 1.40084 * 108.20510 * 359.97438 * 21 19 18 23 23 C 1.46501 * 126.03543 * 179.97438 * 22 21 19 24 24 C 1.34944 * 107.92669 * 359.75973 * 22 21 19 25 25 C 1.50698 * 126.12677 * 180.24067 * 24 22 21 26 26 H 1.08997 * 109.47467 * 299.99589 * 1 2 3 27 27 H 1.09001 * 109.47705 * 60.00390 * 1 2 3 28 28 H 1.09009 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47467 * 240.00411 * 2 1 3 30 30 H 1.09006 * 109.47030 * 119.99814 * 2 1 3 31 31 H 1.09003 * 109.46697 * 39.45716 * 4 3 2 32 32 H 1.09003 * 109.47399 * 159.45235 * 4 3 2 33 33 H 0.97006 * 119.99770 * 180.02562 * 8 7 5 34 34 H 0.97007 * 119.99489 * 246.29283 * 16 13 3 35 35 H 1.09004 * 109.47357 * 283.31281 * 17 16 13 36 36 H 1.08997 * 109.47247 * 43.30971 * 17 16 13 37 37 H 1.09004 * 109.46587 * 90.00144 * 20 19 18 38 38 H 1.08996 * 109.46924 * 210.00042 * 20 19 18 39 39 H 1.08992 * 109.47409 * 330.00411 * 20 19 18 40 40 H 1.08999 * 109.47083 * 89.97362 * 23 22 21 41 41 H 1.08999 * 109.47362 * 209.97563 * 23 22 21 42 42 H 1.09007 * 109.47213 * 329.97626 * 23 22 21 43 43 H 1.08998 * 109.46983 * 270.17246 * 25 24 22 44 44 H 1.08997 * 109.46978 * 30.17549 * 25 24 22 45 45 H 1.09004 * 109.47024 * 150.17292 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4455 1.7057 -1.9356 6 1 4.1001 0.9886 -1.4625 7 6 3.7878 2.2523 -3.1542 8 7 2.9905 3.1251 -3.7306 9 14 5.3832 1.7522 -3.9873 10 1 6.0954 0.7627 -3.1393 11 1 5.0826 1.1464 -5.3093 12 1 6.2402 2.9503 -4.1751 13 16 2.4121 2.1202 1.4287 14 8 1.5797 1.5397 2.4235 15 8 2.4475 3.5156 1.1623 16 7 3.9636 1.6754 1.7992 17 6 5.0742 2.1162 0.9517 18 6 6.3732 1.9441 1.6961 19 6 7.1818 0.8028 1.6872 20 6 6.9045 -0.4707 0.9307 21 7 8.2205 1.0320 2.4492 22 7 8.1057 2.3284 2.9672 23 6 9.0568 2.9836 3.8686 24 6 6.9669 2.8689 2.4857 25 6 6.4471 4.2528 2.7783 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3179 1.8696 -1.9157 32 1 2.1714 3.1807 -1.0666 33 1 3.2312 3.5094 -4.5882 34 1 4.1369 1.1230 2.5776 35 1 5.0956 1.5182 0.0406 36 1 4.9397 3.1666 0.6937 37 1 7.3505 -0.4080 -0.0619 38 1 7.3349 -1.3146 1.4699 39 1 5.8276 -0.6105 0.8370 40 1 9.8063 3.5149 3.2820 41 1 8.5257 3.6909 4.5055 42 1 9.5462 2.2326 4.4888 43 1 5.8084 4.2220 3.6610 44 1 7.2858 4.9249 2.9599 45 1 5.8713 4.6125 1.9255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337084586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = -10.645000 kcal Electronic energy + Delta-G solvation = -27991.483193 eV Core-core repulsion = 24172.353427 eV Total energy + Delta-G solvation = -3819.129765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30742 -36.60113 -35.99708 -35.23597 -35.13129 -33.89927 -32.67851 -31.67780 -29.88337 -29.49372 -27.66759 -26.58620 -25.77658 -23.87188 -23.11656 -21.63784 -19.64918 -19.44415 -18.71082 -17.12279 -16.86291 -16.43901 -16.22823 -15.82280 -15.44712 -14.96263 -14.31903 -14.07436 -13.73403 -13.70518 -13.47688 -13.25698 -13.17540 -13.04007 -12.87694 -12.65157 -12.25466 -12.11560 -12.01133 -11.93094 -11.87805 -11.76921 -11.64506 -11.41001 -11.28274 -11.23949 -11.04630 -10.90149 -10.48247 -10.38692 -10.29568 -9.96637 -9.74555 -8.97442 -8.89659 -8.47901 -8.29760 -7.98186 -6.09248 -4.15331 1.34300 1.90049 2.50693 2.77957 3.25739 3.34907 3.35921 3.71327 4.26508 4.37826 4.43690 4.65781 4.96462 4.98497 5.11086 5.13675 5.22119 5.25307 5.40154 5.45683 5.49107 5.51297 5.67819 5.79699 5.80936 5.86491 5.86956 6.00919 6.10112 6.17652 6.22208 6.36879 6.47212 6.53214 6.72383 6.77301 6.80920 7.07278 7.36425 7.44058 7.53256 7.73001 7.81077 7.88821 8.18430 8.89283 9.50464 10.98746 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.005559 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.188491 B = 5035.945746 C = 6476.334561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.536 4.536 6 H 0.066 0.934 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.888 3.112 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.284 1.284 13 S 2.784 3.216 14 O -1.003 7.003 15 O -0.981 6.981 16 N -1.126 6.126 17 C 0.198 3.802 18 C -0.240 4.240 19 C 0.093 3.907 20 C -0.076 4.076 21 N -0.305 5.305 22 N -0.380 5.380 23 C 0.104 3.896 24 C 0.101 3.899 25 C -0.097 4.097 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.263 0.737 34 H 0.406 0.594 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.270 -2.713 12.148 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.576 4.576 6 H 0.084 0.916 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.715 3.285 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.210 1.210 13 S 2.792 3.208 14 O -0.987 6.987 15 O -0.964 6.964 16 N -0.885 5.885 17 C 0.072 3.928 18 C -0.252 4.252 19 C -0.074 4.074 20 C -0.135 4.135 21 N -0.127 5.127 22 N -0.162 5.162 23 C -0.037 4.037 24 C -0.027 4.027 25 C -0.156 4.156 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.847 -2.272 12.887 15.258 hybrid contribution 0.686 -0.326 -0.797 1.101 sum 8.533 -2.598 12.090 15.024 Atomic orbital electron populations 1.22215 0.97061 1.01275 1.02445 1.20936 0.93566 0.82915 1.01990 1.57709 1.78656 1.22933 1.24075 1.19211 0.97383 0.92357 0.78958 1.21588 1.05688 1.25653 1.04645 0.91594 1.24928 0.96878 0.94845 0.97080 1.69946 1.36800 1.28785 1.17160 0.86608 0.83685 0.78570 0.79599 1.19413 1.21059 1.20980 1.01741 0.72672 0.73749 0.72637 1.93545 1.65802 1.79708 1.59621 1.93563 1.86630 1.30973 1.85254 1.56086 1.24620 1.68838 1.38960 1.19565 0.80382 1.01252 0.91642 1.19824 1.01580 0.94752 1.09070 1.22260 0.91932 0.96810 0.96367 1.20238 1.03262 0.91221 0.98795 1.77285 1.22937 0.95515 1.16997 1.48275 1.18221 1.11262 1.38437 1.21766 0.91959 0.97627 0.92393 1.20954 0.88178 0.96854 0.96732 1.20544 1.01303 0.89450 1.04280 0.92539 0.92115 0.92511 0.90110 0.92221 0.94569 0.92952 0.92716 0.76244 0.89084 0.89933 0.90274 0.91203 0.89777 0.91035 0.89694 0.89503 0.90085 0.91290 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.25 6.03 -4.04 -0.02 2.22 16 3 N -0.99 -19.75 2.84 -115.67 -0.33 -20.08 16 4 C 0.24 5.81 5.45 -5.20 -0.03 5.78 16 5 C -0.54 -13.27 8.74 -34.44 -0.30 -13.57 16 6 H 0.07 1.54 6.16 -52.48 -0.32 1.22 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 9 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 S 2.78 53.86 6.08 -107.50 -0.65 53.21 16 14 O -1.00 -20.25 17.17 -57.17 -0.98 -21.24 16 15 O -0.98 -22.09 15.95 -57.17 -0.91 -23.00 16 16 N -1.13 -18.21 6.04 -11.66 -0.07 -18.28 16 17 C 0.20 3.35 6.13 -5.20 -0.03 3.32 16 18 C -0.24 -3.74 5.50 -105.05 -0.58 -4.32 16 19 C 0.09 1.43 7.22 -82.40 -0.59 0.83 16 20 C -0.08 -1.00 10.12 36.01 0.36 -0.63 16 21 N -0.31 -4.73 12.58 33.67 0.42 -4.30 16 22 N -0.38 -5.04 4.01 -63.88 -0.26 -5.30 16 23 C 0.10 0.87 11.09 59.85 0.66 1.53 16 24 C 0.10 1.40 6.93 -82.26 -0.57 0.83 16 25 C -0.10 -1.08 9.68 36.00 0.35 -0.73 16 26 H 0.06 0.93 7.97 -51.93 -0.41 0.52 16 27 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 28 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 29 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 30 H 0.06 0.89 7.78 -51.93 -0.40 0.49 16 31 H 0.04 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.05 1.39 6.79 -51.93 -0.35 1.03 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.41 5.72 8.66 -34.46 -0.30 5.42 16 35 H 0.09 1.66 5.60 -51.93 -0.29 1.37 16 36 H 0.08 1.50 6.68 -51.93 -0.35 1.15 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.51 7.67 -51.93 -0.40 0.11 16 42 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.59 7.74 -51.93 -0.40 0.18 16 45 H 0.09 1.17 7.14 -51.93 -0.37 0.80 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -32.92 382.99 -8.71 -41.63 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.95 Total: 5.94 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.47 Total: -5.43 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: 0.50 Total: -71.98 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.89 Total: -44.24 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 53.86 SS G_CDS: -0.65 Total: 53.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.92 -8.71 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337084586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.982 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds