Wall clock time and date at job start Tue Mar 31 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47507 * 2 1 4 4 C 1.46499 * 120.00065 * 275.00243 * 3 2 1 5 5 C 1.50699 * 109.47082 * 280.11745 * 4 3 2 6 6 H 1.07997 * 119.99906 * 4.15963 * 5 4 3 7 7 C 1.37882 * 119.99941 * 184.15439 * 5 4 3 8 8 N 1.31514 * 120.00145 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99938 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46938 * 90.00477 * 9 7 5 11 11 H 1.48494 * 109.47082 * 210.00155 * 9 7 5 12 12 H 1.48500 * 109.47297 * 330.00519 * 9 7 5 13 13 S 1.65602 * 120.00004 * 94.99832 * 3 2 1 14 14 O 1.42101 * 106.39994 * 330.08923 * 13 3 2 15 15 O 1.42099 * 106.40258 * 197.16977 * 13 3 2 16 16 N 1.65596 * 107.21657 * 83.62677 * 13 3 2 17 17 C 1.46507 * 119.99900 * 65.41162 * 16 13 3 18 18 C 1.53001 * 109.47097 * 165.64151 * 17 16 13 19 19 C 1.52991 * 109.47052 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47251 * 180.02562 * 19 18 17 21 21 C 1.39873 * 126.04246 * 90.01753 * 20 19 18 22 22 N 1.30836 * 108.19766 * 179.97438 * 21 20 19 23 23 N 1.40083 * 108.21092 * 0.02562 * 22 21 20 24 24 C 1.46499 * 126.03773 * 180.02562 * 23 22 21 25 25 C 1.34944 * 107.92173 * 359.75282 * 23 22 21 26 26 H 1.09003 * 109.47116 * 59.99815 * 1 2 3 27 27 H 1.09002 * 109.47415 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47243 * 300.00288 * 1 2 3 29 29 H 1.09009 * 109.47186 * 239.99959 * 2 1 3 30 30 H 1.09003 * 109.47116 * 120.00184 * 2 1 3 31 31 H 1.09009 * 109.46963 * 40.11743 * 4 3 2 32 32 H 1.09001 * 109.47269 * 160.11815 * 4 3 2 33 33 H 0.96993 * 120.00464 * 179.97438 * 8 7 5 34 34 H 0.97000 * 120.00415 * 245.40602 * 16 13 3 35 35 H 1.08999 * 109.47178 * 45.63855 * 17 16 13 36 36 H 1.08999 * 109.46827 * 285.63895 * 17 16 13 37 37 H 1.09004 * 109.47158 * 59.99357 * 18 17 16 38 38 H 1.09003 * 109.46907 * 300.00088 * 18 17 16 39 39 H 1.09003 * 109.47240 * 299.99766 * 19 18 17 40 40 H 1.08992 * 109.47534 * 59.99922 * 19 18 17 41 41 H 1.08000 * 125.89553 * 0.02562 * 21 20 19 42 42 H 1.08998 * 109.47256 * 89.97331 * 24 23 22 43 43 H 1.09002 * 109.47119 * 209.97342 * 24 23 22 44 44 H 1.09000 * 109.46752 * 329.97377 * 24 23 22 45 45 H 1.08000 * 126.12435 * 180.23575 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4376 1.6934 -1.9435 6 1 4.0482 0.9128 -1.5144 7 6 3.8284 2.3100 -3.1132 8 7 3.0850 3.2608 -3.6356 9 14 5.4146 1.7957 -3.9553 10 1 5.1313 0.7015 -4.9186 11 1 5.9890 2.9572 -4.6806 12 1 6.3842 1.3196 -2.9363 13 16 2.4122 2.1202 1.4287 14 8 1.5766 1.5430 2.4226 15 8 2.4523 3.5152 1.1612 16 7 3.9617 1.6709 1.8021 17 6 5.0730 2.0914 0.9450 18 6 6.3966 1.8652 1.6784 19 6 7.5570 2.3049 0.7836 20 6 8.8608 2.0815 1.5057 21 6 9.6342 0.9167 1.4665 22 7 10.6901 1.1019 2.2165 23 7 10.6218 2.3921 2.7578 24 6 11.6055 3.0037 3.6547 25 6 9.4927 2.9742 2.3024 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.3118 1.8788 -1.9111 32 1 2.1835 3.1802 -1.0655 33 1 3.3600 3.6949 -4.4582 34 1 4.1337 1.1293 2.5882 35 1 4.9667 3.1494 0.7051 36 1 5.0631 1.5074 0.0247 37 1 6.5029 0.8072 1.9183 38 1 6.4064 2.4491 2.5987 39 1 7.5474 1.7213 -0.1370 40 1 7.4506 3.3629 0.5441 41 1 9.4004 0.0197 0.9123 42 1 12.3613 3.5228 3.0653 43 1 11.1052 3.7153 4.3117 44 1 12.0819 2.2282 4.2545 45 1 9.1531 3.9729 2.5342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337094772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:24 Heat of formation + Delta-G solvation = -12.262562 kcal Electronic energy + Delta-G solvation = -26786.440874 eV Core-core repulsion = 22967.240966 eV Total energy + Delta-G solvation = -3819.199908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26032 -36.64765 -36.16764 -35.90223 -35.13581 -33.79508 -32.69048 -32.31956 -29.88851 -29.51704 -27.18039 -26.59066 -24.57221 -23.13048 -21.78153 -21.48555 -21.18099 -20.14448 -18.66340 -17.04501 -16.92018 -16.76427 -16.38773 -15.62825 -15.56395 -15.11978 -14.92746 -14.53339 -14.28920 -13.75732 -13.49456 -13.31055 -13.20412 -13.02381 -12.87724 -12.55086 -12.42420 -12.10245 -12.02794 -11.93658 -11.66211 -11.45352 -11.27382 -11.23243 -11.06827 -11.02199 -10.90966 -10.76449 -10.49184 -10.39697 -10.32638 -9.98211 -9.76437 -9.51929 -8.89183 -8.48703 -8.39951 -8.01613 -6.09744 -4.16280 1.37161 1.78594 2.40350 2.74236 3.25456 3.33328 3.34062 3.62157 4.23770 4.34811 4.36633 4.73886 4.85766 4.96269 5.05490 5.10550 5.21122 5.23695 5.26276 5.41769 5.49112 5.56905 5.64478 5.80298 5.80893 5.87080 5.96856 6.10000 6.14205 6.24435 6.30623 6.36936 6.50611 6.59670 6.65829 6.71525 6.76954 6.90458 7.34364 7.42740 7.50402 7.59716 7.73116 7.87774 8.18003 8.88092 9.49252 10.98199 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010900 B = 0.003787 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.205781 B = 7392.451332 C = 9121.790467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.538 4.538 6 H 0.065 0.935 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.269 1.269 13 S 2.785 3.215 14 O -1.003 7.003 15 O -0.980 6.980 16 N -1.131 6.131 17 C 0.115 3.885 18 C -0.115 4.115 19 C -0.044 4.044 20 C -0.225 4.225 21 C 0.053 3.947 22 N -0.303 5.303 23 N -0.382 5.382 24 C 0.104 3.896 25 C 0.052 3.948 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.183 0.817 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.642 -2.795 11.595 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.194 1.194 13 S 2.793 3.207 14 O -0.988 6.988 15 O -0.963 6.963 16 N -0.890 5.890 17 C -0.011 4.011 18 C -0.154 4.154 19 C -0.083 4.083 20 C -0.236 4.236 21 C -0.133 4.133 22 N -0.125 5.125 23 N -0.165 5.165 24 C -0.038 4.038 25 C -0.094 4.094 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.199 0.801 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.231 -2.375 12.326 16.843 hybrid contribution 0.529 -0.342 -0.822 1.036 sum 11.760 -2.717 11.504 16.674 Atomic orbital electron populations 1.22212 0.97027 1.01274 1.02470 1.20934 0.93595 0.82948 1.01934 1.57714 1.78652 1.22893 1.24095 1.19215 0.97198 0.92588 0.78935 1.21529 1.07285 1.20616 1.08284 0.91738 1.24946 0.97042 0.94733 0.97046 1.69932 1.38019 1.24220 1.20443 0.86642 0.83624 0.78150 0.79889 1.20753 1.21195 1.19413 1.01708 0.72634 0.73720 0.72598 1.93542 1.65668 1.79823 1.59718 1.93571 1.86589 1.30998 1.85187 1.55978 1.25319 1.69937 1.37765 1.21458 0.84585 1.01539 0.93536 1.21748 0.93305 1.01664 0.98719 1.19867 0.88651 1.02396 0.97412 1.20181 1.01224 0.94861 1.07370 1.23855 0.92023 0.99291 0.98145 1.77317 1.23006 0.96586 1.15570 1.48425 1.18518 1.11214 1.38329 1.21805 0.91176 0.98399 0.92417 1.22367 0.88637 0.99754 0.98620 0.92126 0.92509 0.92493 0.90198 0.92253 0.94891 0.92623 0.92616 0.76352 0.90428 0.89556 0.91719 0.91992 0.90415 0.90833 0.80052 0.90965 0.89582 0.89501 0.80991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.15 0.38 -2.32 16 2 C 0.13 2.27 6.02 -4.04 -0.02 2.24 16 3 N -0.99 -19.94 2.84 -115.66 -0.33 -20.26 16 4 C 0.24 5.85 5.46 -5.19 -0.03 5.82 16 5 C -0.54 -13.33 8.51 -34.44 -0.29 -13.62 16 6 H 0.06 1.52 6.47 -52.49 -0.34 1.18 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 9 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 13 S 2.79 54.40 6.07 -107.50 -0.65 53.75 16 14 O -1.00 -20.34 17.17 -57.17 -0.98 -21.32 16 15 O -0.98 -22.66 16.01 -57.17 -0.92 -23.57 16 16 N -1.13 -17.84 6.06 -10.61 -0.06 -17.90 16 17 C 0.11 1.82 6.21 -4.04 -0.03 1.80 16 18 C -0.12 -1.44 5.34 -26.73 -0.14 -1.58 16 19 C -0.04 -0.54 5.70 -27.89 -0.16 -0.70 16 20 C -0.22 -2.69 5.35 -105.05 -0.56 -3.25 16 21 C 0.05 0.65 11.96 -17.36 -0.21 0.44 16 22 N -0.30 -3.99 12.57 30.63 0.39 -3.60 16 23 N -0.38 -4.13 4.01 -68.16 -0.27 -4.41 16 24 C 0.10 0.65 11.47 59.85 0.69 1.34 16 25 C 0.05 0.55 11.40 -17.23 -0.20 0.35 16 26 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 29 H 0.08 1.36 8.09 -51.92 -0.42 0.94 16 30 H 0.06 0.90 7.78 -51.93 -0.40 0.49 16 31 H 0.03 0.83 8.10 -51.92 -0.42 0.41 16 32 H 0.06 1.50 6.77 -51.93 -0.35 1.14 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.40 5.24 8.65 -34.47 -0.30 4.94 16 35 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 36 H 0.09 1.51 5.86 -51.93 -0.30 1.20 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -33.42 387.11 -9.09 -42.51 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.14 Total: 6.09 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.67 Total: -7.89 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: 0.46 Total: -70.19 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.90 Total: -44.90 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 54.40 SS G_CDS: -0.65 Total: 53.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.42 -9.09 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337094772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.246 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds