Wall clock time and date at job start Tue Mar 31 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47313 * 2 1 4 4 N 1.30837 * 125.89793 * 269.97524 * 3 2 1 5 5 N 1.40093 * 108.20017 * 180.02562 * 4 3 2 6 6 C 1.46501 * 126.03342 * 180.02562 * 5 4 3 7 7 C 1.34945 * 107.92559 * 359.75853 * 5 4 3 8 8 C 1.35313 * 107.74527 * 0.38832 * 7 5 4 9 9 C 1.50707 * 126.03336 * 179.87400 * 8 7 5 10 10 N 1.46501 * 109.47168 * 259.68758 * 9 8 7 11 11 S 1.65598 * 120.00034 * 165.00185 * 10 9 8 12 12 O 1.42100 * 106.40183 * 311.46236 * 11 10 9 13 13 O 1.42101 * 106.40217 * 178.54484 * 11 10 9 14 14 N 1.65597 * 107.21541 * 65.00515 * 11 10 9 15 15 C 1.46503 * 119.99956 * 269.99520 * 14 11 10 16 16 C 1.46497 * 120.00227 * 89.99985 * 14 11 10 17 17 H 1.09003 * 109.46733 * 0.02562 * 16 14 11 18 18 C 1.53000 * 109.47145 * 119.99787 * 16 14 11 19 19 C 1.50694 * 109.47115 * 239.99861 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.09003 * 109.46657 * 60.00057 * 1 2 3 28 28 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47050 * 299.99996 * 1 2 3 30 30 H 1.09007 * 109.47223 * 240.00264 * 2 1 3 31 31 H 1.08997 * 109.47075 * 120.00133 * 2 1 3 32 32 H 1.09003 * 109.47106 * 89.97008 * 6 5 4 33 33 H 1.08996 * 109.47298 * 209.97258 * 6 5 4 34 34 H 1.08999 * 109.47148 * 329.97361 * 6 5 4 35 35 H 1.08002 * 126.12164 * 180.24000 * 7 5 4 36 36 H 1.09001 * 109.46602 * 139.69301 * 9 8 7 37 37 H 1.08992 * 109.47327 * 19.69130 * 9 8 7 38 38 H 0.96998 * 119.99681 * 345.00768 * 10 9 8 39 39 H 1.08994 * 109.47665 * 270.00896 * 15 14 11 40 40 H 1.09008 * 109.46786 * 30.00504 * 15 14 11 41 41 H 1.08997 * 109.47360 * 149.99945 * 15 14 11 42 42 H 1.09000 * 109.47156 * 59.99824 * 18 16 14 43 43 H 1.08997 * 109.47359 * 180.02562 * 18 16 14 44 44 H 1.09007 * 109.47356 * 300.00099 * 18 16 14 45 45 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2885 2.1439 -1.0599 5 7 2.7338 3.4021 -0.6340 6 6 3.1276 4.5157 -1.5006 7 6 2.7303 3.4090 0.7154 8 6 2.3058 2.1939 1.1330 9 6 2.1493 1.7538 2.5658 10 7 3.3045 0.9418 2.9563 11 16 3.5953 0.6312 4.5567 12 8 3.5083 1.8796 5.2299 13 8 4.7490 -0.1972 4.6014 14 7 2.3367 -0.2894 5.1139 15 6 1.1501 0.3576 5.6795 16 6 2.4096 -1.7507 5.0413 17 1 3.3595 -2.0453 4.5951 18 6 2.3052 -2.3372 6.4506 19 6 1.2747 -2.2690 4.1962 20 1 0.5693 -1.5790 3.7573 21 6 1.1363 -3.6244 3.9841 22 7 1.9950 -4.4648 4.5189 23 14 -0.2710 -4.2669 2.9371 24 1 -0.1969 -5.7483 2.8635 25 1 -1.5644 -3.8651 3.5459 26 1 -0.1699 -3.6981 1.5691 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.2564 5.1344 -1.7158 33 1 3.8851 5.1170 -0.9980 34 1 3.5343 4.1242 -2.4331 35 1 3.0174 4.2355 1.3486 36 1 1.2390 1.1627 2.6669 37 1 2.0868 2.6304 3.2105 38 1 3.8990 0.5862 2.2773 39 1 1.2868 0.4933 6.7522 40 1 1.0053 1.3287 5.2059 41 1 0.2754 -0.2677 5.5009 42 1 1.3556 -2.0425 6.8973 43 1 2.3600 -3.4244 6.3967 44 1 3.1262 -1.9623 7.0620 45 1 1.8973 -5.4183 4.3699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337762339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:02 Heat of formation + Delta-G solvation = -4.538421 kcal Electronic energy + Delta-G solvation = -27843.110718 eV Core-core repulsion = 24024.245753 eV Total energy + Delta-G solvation = -3818.864964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.33596 -36.63789 -36.11267 -35.51029 -35.18758 -34.14793 -32.56438 -31.69855 -30.19102 -29.04438 -27.14298 -25.47504 -25.14623 -24.82986 -23.08935 -20.88063 -20.70031 -19.40030 -18.74073 -17.23157 -16.96045 -16.47230 -16.30316 -15.77197 -15.46428 -14.91694 -14.77933 -14.26485 -14.11020 -13.49075 -13.35073 -13.33954 -13.22267 -13.12039 -12.70950 -12.58902 -12.49962 -11.96350 -11.93811 -11.74211 -11.49807 -11.44657 -11.32245 -11.21160 -11.17936 -10.98688 -10.93378 -10.83562 -10.41619 -10.37060 -10.18167 -10.03175 -9.32108 -9.25461 -9.03667 -8.48686 -8.44939 -7.91482 -6.06395 -4.14675 1.29420 1.82895 2.41623 2.68539 3.27245 3.33663 3.34073 3.67306 4.23953 4.34124 4.37746 4.70332 4.86844 4.90276 5.03627 5.14373 5.18806 5.24207 5.28289 5.34454 5.54915 5.58910 5.69447 5.72925 5.87354 6.12138 6.17429 6.20886 6.25260 6.30528 6.37002 6.40213 6.69203 6.70126 6.91277 6.91533 6.92616 7.15634 7.33334 7.58523 7.66513 7.70289 7.81957 8.08394 8.29378 8.88063 9.51375 10.98625 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.005082 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.682236 B = 5507.972673 C = 7303.671442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C 0.101 3.899 4 N -0.300 5.300 5 N -0.382 5.382 6 C 0.105 3.895 7 C 0.070 3.930 8 C -0.240 4.240 9 C 0.202 3.798 10 N -1.124 6.124 11 S 2.783 3.217 12 O -1.001 7.001 13 O -0.983 6.983 14 N -0.990 5.990 15 C 0.106 3.894 16 C 0.269 3.731 17 H 0.059 0.941 18 C -0.145 4.145 19 C -0.523 4.523 20 H 0.063 0.937 21 C 0.065 3.935 22 N -0.887 5.887 23 Si 0.893 3.107 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.275 1.275 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.175 0.825 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.413 0.587 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.092 0.908 44 H 0.011 0.989 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 14.924 -8.278 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C -0.066 4.066 4 N -0.122 5.122 5 N -0.163 5.163 6 C -0.037 4.037 7 C -0.077 4.077 8 C -0.253 4.253 9 C 0.075 3.925 10 N -0.883 5.883 11 S 2.791 3.209 12 O -0.985 6.985 13 O -0.967 6.967 14 N -0.833 5.833 15 C -0.041 4.041 16 C 0.166 3.834 17 H 0.076 0.924 18 C -0.205 4.205 19 C -0.563 4.563 20 H 0.082 0.918 21 C -0.137 4.137 22 N -0.525 5.525 23 Si 0.721 3.279 24 H -0.214 1.214 25 H -0.203 1.203 26 H -0.200 1.200 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.192 0.808 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.245 0.755 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.110 0.890 44 H 0.030 0.970 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.519 15.303 -8.987 17.754 hybrid contribution -0.837 -0.558 -0.285 1.046 sum -1.356 14.746 -9.272 17.471 Atomic orbital electron populations 1.21660 0.94181 1.02333 1.01754 1.20084 0.96374 0.88298 1.04342 1.22358 0.97360 0.97020 0.89909 1.77341 1.21509 0.90598 1.22723 1.48376 1.51811 1.11429 1.04680 1.21806 1.00847 0.86014 0.95018 1.22390 1.00832 0.99623 0.84890 1.19946 1.14802 0.94608 0.95941 1.19321 0.88516 0.94196 0.90446 1.56107 1.38372 1.66523 1.27308 1.01765 0.73475 0.72732 0.72882 1.93527 1.87385 1.44368 1.73204 1.93590 1.48129 1.68734 1.86276 1.57699 1.32703 1.18406 1.74472 1.21201 0.89675 0.95952 0.97259 1.18707 0.98528 0.71846 0.94337 0.92381 1.22058 0.97401 1.04342 0.96654 1.21329 1.12183 0.91837 1.30939 0.91835 1.24911 0.96170 0.96852 0.95811 1.69874 1.35832 1.02909 1.43916 0.86643 0.82548 0.77751 0.80944 1.21413 1.20332 1.20014 0.93118 0.91701 0.92221 0.90626 0.88413 0.90960 0.89581 0.89433 0.80812 0.90772 0.90599 0.75461 0.93970 0.93270 0.90180 0.94911 0.88970 0.96975 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 37.16 0.37 -1.48 16 2 C -0.05 -0.72 6.31 -27.88 -0.18 -0.90 16 3 C 0.10 1.44 6.47 -82.41 -0.53 0.90 16 4 N -0.30 -4.31 12.58 33.67 0.42 -3.88 16 5 N -0.38 -4.37 4.01 -68.16 -0.27 -4.65 16 6 C 0.10 0.70 11.47 59.85 0.69 1.38 16 7 C 0.07 0.79 11.40 -17.23 -0.20 0.59 16 8 C -0.24 -3.19 5.50 -105.05 -0.58 -3.76 16 9 C 0.20 2.79 6.36 -5.19 -0.03 2.75 16 10 N -1.12 -17.76 6.05 -11.65 -0.07 -17.83 16 11 S 2.78 53.55 6.09 -107.50 -0.66 52.90 16 12 O -1.00 -20.02 16.68 -57.17 -0.95 -20.98 16 13 O -0.98 -22.35 16.70 -57.17 -0.95 -23.31 16 14 N -0.99 -19.89 3.12 -115.85 -0.36 -20.25 16 15 C 0.11 1.81 9.28 59.85 0.56 2.37 16 16 C 0.27 6.40 2.62 -69.09 -0.18 6.22 16 17 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 18 C -0.14 -3.41 8.97 37.16 0.33 -3.08 16 19 C -0.52 -12.88 7.99 -34.44 -0.28 -13.15 16 20 H 0.06 1.49 7.33 -52.49 -0.38 1.11 16 21 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 22 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 23 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.48 7.96 -51.93 -0.41 1.07 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.96 7.74 -51.93 -0.40 0.56 16 38 H 0.41 6.24 8.64 -34.47 -0.30 5.94 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.71 7.79 -51.92 -0.40 0.31 16 41 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 42 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 43 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -32.61 383.91 -8.70 -41.32 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.13 Total: 6.03 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -0.12 Total: -6.59 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: 0.35 Total: -69.96 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.91 Total: -44.29 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 53.55 SS G_CDS: -0.66 Total: 52.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.61 -8.70 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337762339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.779 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds