Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46935 * 2 1 4 4 N 1.46903 * 109.46625 * 240.00120 * 2 1 3 5 5 C 1.46895 * 111.00193 * 84.99949 * 4 2 1 6 6 C 1.50696 * 109.47327 * 179.97438 * 5 4 2 7 7 O 1.21297 * 119.99752 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00099 * 179.97438 * 6 5 4 9 9 C 1.37096 * 119.99968 * 180.02562 * 8 6 5 10 10 H 1.08007 * 120.00151 * 359.97438 * 9 8 6 11 11 C 1.38950 * 119.99956 * 180.02562 * 9 8 6 12 12 N 1.31410 * 120.00114 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99922 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47093 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47116 * 119.99423 * 13 11 9 16 16 H 1.48501 * 109.46899 * 239.99773 * 13 11 9 17 17 C 1.50699 * 109.47067 * 120.00270 * 2 1 3 18 18 N 1.29944 * 126.29130 * 74.97208 * 17 2 1 19 19 O 1.21301 * 110.25550 * 179.97438 * 18 17 2 20 20 C 1.33645 * 109.80803 * 0.02562 * 19 18 17 21 21 C 1.50701 * 126.55043 * 179.97438 * 20 19 18 22 22 C 1.50706 * 109.46813 * 270.02276 * 21 20 19 23 23 C 1.38238 * 119.99727 * 90.00361 * 22 21 20 24 24 C 1.38234 * 119.99693 * 180.02562 * 23 22 21 25 25 C 1.38234 * 120.00240 * 359.97438 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.26327 * 25 24 23 27 27 C 1.38234 * 120.00207 * 270.01852 * 22 21 20 28 28 N 1.31135 * 106.89762 * 0.22674 * 20 19 18 29 29 H 1.09001 * 109.46797 * 299.99530 * 1 2 3 30 30 H 1.08993 * 109.47513 * 59.99542 * 1 2 3 31 31 H 1.09004 * 109.47149 * 180.02562 * 1 2 3 32 32 H 1.00900 * 110.99582 * 208.95611 * 4 2 1 33 33 H 1.08997 * 109.47096 * 300.00137 * 5 4 2 34 34 H 1.09000 * 109.46939 * 59.99927 * 5 4 2 35 35 H 0.97000 * 120.00177 * 0.02562 * 8 6 5 36 36 H 0.97000 * 120.00029 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47134 * 150.02793 * 21 20 19 38 38 H 1.08993 * 109.47324 * 30.02186 * 21 20 19 39 39 H 1.07997 * 119.99846 * 359.97438 * 23 22 21 40 40 H 1.07999 * 119.99751 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.99744 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 43 43 H 1.07999 * 120.00008 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2225 -2.3469 6 6 2.5883 -0.5215 -3.5558 7 8 2.8685 -1.6986 -3.4700 8 7 2.7283 0.1205 -4.7324 9 6 3.1881 -0.5566 -5.8323 10 1 3.4385 -1.6044 -5.7558 11 6 3.3330 0.1055 -7.0453 12 7 3.0289 1.3806 -7.1384 13 14 3.9602 -0.8169 -8.5438 14 1 4.2297 -2.2306 -8.1778 15 1 2.9363 -0.7699 -9.6183 16 1 5.2136 -0.1833 -9.0262 17 6 2.0324 -0.7105 1.2304 18 7 2.0327 -1.9943 1.4310 19 8 2.5037 -2.2492 2.5194 20 6 2.8588 -1.1177 3.1354 21 6 3.4805 -0.9974 4.5029 22 6 2.3939 -0.8677 5.5391 23 6 1.8662 -1.9992 6.1325 24 6 0.8691 -1.8803 7.0825 25 6 0.4001 -0.6300 7.4395 26 6 0.9243 0.5013 6.8426 27 6 1.9247 0.3826 5.8959 28 7 2.5579 -0.1317 2.3249 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9172 -1.1206 -1.0288 33 1 1.0870 0.6163 -2.5525 34 1 2.7588 1.0461 -2.1183 35 1 2.5039 1.0617 -4.8011 36 1 3.1297 1.8427 -7.9852 37 1 4.1201 -0.1154 4.5349 38 1 4.0764 -1.8861 4.7106 39 1 2.2323 -2.9761 5.8532 40 1 0.4565 -2.7644 7.5458 41 1 -0.3792 -0.5372 8.1815 42 1 0.5549 1.4779 7.1183 43 1 2.3365 1.2666 5.4318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348406039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = 58.605487 kcal Electronic energy + Delta-G solvation = -26392.002250 eV Core-core repulsion = 22440.431459 eV Total energy + Delta-G solvation = -3951.570790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.69794 -39.70188 -38.45466 -37.03732 -35.55650 -34.25955 -33.80731 -31.70578 -31.31588 -31.21137 -30.23800 -27.86292 -26.67840 -24.94999 -23.81568 -23.39647 -22.97263 -21.89473 -20.31888 -19.34256 -18.26698 -17.99839 -17.64139 -17.09837 -16.42565 -15.72496 -15.58967 -15.47405 -15.21768 -14.85273 -14.44155 -14.06174 -13.84308 -13.79630 -13.75190 -13.47258 -13.25115 -12.91085 -12.67026 -12.26891 -12.17450 -11.95469 -11.86030 -11.80308 -11.51286 -11.43144 -11.36516 -11.29037 -11.11557 -10.98619 -10.33500 -10.22050 -10.01432 -9.51705 -9.33404 -9.24736 -8.49437 -8.16716 -7.95983 -6.41299 -3.82004 0.75701 0.99142 1.12317 2.10486 2.65651 3.17051 3.26763 3.28218 3.35434 3.47254 3.88399 3.92381 4.11476 4.20656 4.29776 4.44131 4.59377 4.72156 4.77720 4.80755 5.00247 5.03419 5.10572 5.20969 5.23581 5.25832 5.31601 5.47904 5.58754 5.62204 5.65092 5.73221 5.84640 5.89363 5.95111 6.02352 6.10195 6.11605 6.19733 6.29308 6.55479 7.07006 7.50118 7.56197 8.06717 8.12172 8.61546 9.18431 9.54256 10.05762 10.76502 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034395 B = 0.001844 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.873925 B =15183.931456 C =15455.778487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.176 3.824 3 H 0.074 0.926 4 N -0.655 5.655 5 C 0.050 3.950 6 C 0.441 3.559 7 O -0.581 6.581 8 N -0.563 5.563 9 C -0.298 4.298 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.901 5.901 13 Si 0.930 3.070 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.282 1.282 17 C 0.167 3.833 18 N -0.351 5.351 19 O 0.083 5.917 20 C 0.173 3.827 21 C 0.017 3.983 22 C -0.096 4.096 23 C -0.104 4.104 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.098 4.098 28 N -0.472 5.472 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.352 0.648 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 0.767 30.166 30.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.065 3.935 3 H 0.092 0.908 4 N -0.290 5.290 5 C -0.083 4.083 6 C 0.227 3.773 7 O -0.465 6.465 8 N -0.200 5.200 9 C -0.428 4.428 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.107 4.107 18 N -0.055 5.055 19 O 0.021 5.979 20 C -0.048 4.048 21 C -0.022 4.022 22 C -0.097 4.097 23 C -0.122 4.122 24 C -0.139 4.139 25 C -0.132 4.132 26 C -0.140 4.140 27 C -0.116 4.116 28 N -0.206 5.206 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.173 0.827 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.226 0.774 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.715 -0.304 29.122 29.360 hybrid contribution 0.927 0.783 -0.506 1.315 sum -2.788 0.479 28.616 28.756 Atomic orbital electron populations 1.21805 0.92333 1.03335 1.02002 1.19825 0.96567 0.94711 0.82400 0.90812 1.60214 1.35330 1.31603 1.01814 1.21776 1.01731 0.93799 0.90977 1.19714 0.85058 0.88183 0.84376 1.90543 1.55167 1.16074 1.84673 1.41846 1.57784 1.12451 1.07892 1.19763 1.39796 0.96488 0.86756 0.87847 1.25268 0.97677 0.95791 0.99244 1.69620 1.48726 1.08865 1.27084 0.85793 0.78212 0.79634 0.80667 1.19214 1.20718 1.20775 1.25840 1.00086 0.87302 0.97445 1.74761 1.15383 1.17826 0.97553 1.85355 1.55932 1.34950 1.21637 1.28536 0.97356 0.80760 0.98110 1.19076 0.95210 1.06600 0.81310 1.19498 0.98461 0.94008 0.97747 1.21146 0.96569 0.98184 0.96346 1.21171 0.97150 0.97723 0.97895 1.21250 0.99621 0.92727 0.99647 1.21186 0.96909 0.98879 0.96980 1.21138 0.96553 0.97011 0.96906 1.71846 1.16570 1.30179 1.02000 0.92439 0.90870 0.91341 0.82742 0.89091 0.93468 0.77426 0.91922 0.86289 0.86952 0.85451 0.85754 0.85955 0.85783 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.40 37.16 0.35 -1.43 16 2 C 0.18 2.58 3.16 -68.86 -0.22 2.36 16 3 H 0.07 0.99 7.80 -51.93 -0.41 0.59 16 4 N -0.66 -11.69 5.92 -109.23 -0.65 -12.34 16 5 C 0.05 0.91 5.96 -4.98 -0.03 0.88 16 6 C 0.44 10.73 7.82 -10.99 -0.09 10.64 16 7 O -0.58 -16.36 15.78 5.54 0.09 -16.28 16 8 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 9 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 10 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 13 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.17 2.48 6.71 -156.37 -1.05 1.43 16 18 N -0.35 -5.50 12.15 30.90 0.38 -5.12 16 19 O 0.08 1.07 11.31 18.09 0.20 1.28 16 20 C 0.17 1.87 7.75 -13.05 -0.10 1.77 16 21 C 0.02 0.11 5.97 -29.03 -0.17 -0.07 16 22 C -0.10 -0.68 5.12 -104.62 -0.54 -1.22 16 23 C -0.10 -0.70 9.70 -39.58 -0.38 -1.09 16 24 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 25 C -0.11 -0.73 10.05 -39.58 -0.40 -1.13 16 26 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 27 C -0.10 -0.71 9.70 -39.58 -0.38 -1.09 16 28 N -0.47 -6.21 11.55 -9.86 -0.11 -6.32 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.90 7.45 -51.93 -0.39 0.51 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.35 6.79 8.05 -39.29 -0.32 6.47 16 33 H 0.09 1.49 7.44 -51.93 -0.39 1.11 16 34 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.12 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.11 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -34.38 377.43 -8.35 -42.73 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.55 Total: 12.10 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.04 Total: 0.55 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.28 Total: -62.37 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.29 Total: -15.00 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.38 -8.35 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348406039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.336 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds