Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 120.00397 * 2 1 4 4 C 1.53001 * 109.47662 * 274.99895 * 3 2 1 5 5 C 1.47195 * 109.47585 * 179.97438 * 4 3 2 6 6 N 4.80465 * 117.02151 * 340.38497 * 2 1 3 7 7 S 1.65605 * 119.99643 * 179.97438 * 2 1 3 8 8 O 1.42101 * 106.39963 * 156.46301 * 7 2 1 9 9 O 1.42092 * 106.40562 * 23.54306 * 7 2 1 10 10 N 1.65597 * 107.21874 * 269.99867 * 7 2 1 11 11 C 1.46506 * 119.99891 * 65.00344 * 10 7 2 12 12 C 1.52989 * 109.47243 * 164.99965 * 11 10 7 13 13 C 1.53349 * 109.42090 * 295.12458 * 12 11 10 14 14 C 1.53189 * 109.15350 * 178.67324 * 13 12 11 15 15 N 1.46931 * 108.89061 * 54.57922 * 14 13 12 16 16 C 1.36938 * 120.62972 * 126.29441 * 15 14 13 17 17 H 1.08005 * 120.00173 * 331.83979 * 16 15 14 18 18 C 1.38813 * 119.99936 * 151.83343 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08512 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08402 * 18 16 15 21 21 H 1.48500 * 109.46925 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46793 * 120.00276 * 20 18 16 23 23 H 1.48498 * 109.46814 * 240.00176 * 20 18 16 24 24 C 1.46927 * 118.74004 * 306.32424 * 15 14 13 25 25 C 1.53047 * 109.46104 * 175.00010 * 12 11 10 26 26 H 1.09000 * 109.47751 * 270.00340 * 1 2 3 27 27 H 1.09006 * 109.46905 * 30.00211 * 1 2 3 28 28 H 1.09003 * 109.47369 * 149.99281 * 1 2 3 29 29 H 1.09009 * 109.47204 * 35.00182 * 3 2 1 30 30 H 1.08997 * 109.47569 * 154.99541 * 3 2 1 31 31 H 1.08996 * 109.46838 * 300.00475 * 4 3 2 32 32 H 1.09001 * 109.46912 * 59.99758 * 4 3 2 33 33 H 0.96998 * 120.00564 * 245.00339 * 10 7 2 34 34 H 1.09000 * 109.46657 * 44.99426 * 11 10 7 35 35 H 1.09008 * 109.46786 * 285.00276 * 11 10 7 36 36 H 1.08997 * 109.46256 * 55.02918 * 12 11 10 37 37 H 1.09001 * 109.68292 * 58.70967 * 13 12 11 38 38 H 1.08994 * 109.47524 * 298.51791 * 13 12 11 39 39 H 1.09000 * 109.58714 * 294.72587 * 14 13 12 40 40 H 1.09003 * 109.58688 * 174.43867 * 14 13 12 41 41 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58255 * 173.39566 * 24 15 14 43 43 H 1.09000 * 109.58150 * 293.67300 * 24 15 14 44 44 H 1.09000 * 109.49464 * 61.43304 * 25 12 11 45 45 H 1.08999 * 109.52117 * 301.35057 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3437 1.7733 -1.4370 5 6 3.0793 3.0483 -1.4369 6 7 3.6478 4.0318 -1.4368 7 16 2.2929 -1.4342 0.0006 8 8 3.5758 -1.1571 -0.5439 9 8 1.4113 -2.4068 -0.5434 10 7 2.5380 -1.8580 1.5826 11 6 1.3944 -2.1768 2.4411 12 6 1.8873 -2.8833 3.7055 13 6 2.5037 -4.2354 3.3267 14 6 3.0248 -4.9226 4.5927 15 7 1.9322 -5.0087 5.5713 16 6 1.5903 -6.2107 6.1314 17 1 1.7587 -7.1278 5.5864 18 6 1.0275 -6.2503 7.3997 19 7 1.1223 -5.2057 8.1947 20 14 0.1354 -7.7863 7.9780 21 1 0.1691 -8.8120 6.9047 22 1 0.8037 -8.3191 9.1924 23 1 -1.2751 -7.4490 8.2970 24 6 1.2128 -3.7809 5.9369 25 6 0.7098 -3.1046 4.6578 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6502 2.0043 0.5895 30 1 3.1857 1.1176 0.4344 31 1 2.8910 1.0377 -2.0264 32 1 1.3555 1.9244 -1.8713 33 1 3.4386 -1.8953 1.9408 34 1 0.7078 -2.8308 1.9036 35 1 0.8792 -1.2565 2.7165 36 1 2.6401 -2.2665 4.1962 37 1 3.3285 -4.0808 2.6310 38 1 1.7449 -4.8623 2.8584 39 1 3.8460 -4.3415 5.0123 40 1 3.3749 -5.9251 4.3466 41 1 0.7287 -5.2333 9.0808 42 1 0.3657 -4.0303 6.5759 43 1 1.8857 -3.1078 6.4684 44 1 -0.0322 -3.7421 4.1769 45 1 0.2578 -2.1447 4.9074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351609345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = -34.960969 kcal Electronic energy + Delta-G solvation = -26641.522667 eV Core-core repulsion = 22821.338482 eV Total energy + Delta-G solvation = -3820.184185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.19631 -37.96090 -37.42482 -36.42159 -36.03817 -35.30469 -32.69927 -31.79913 -30.67608 -29.65623 -27.05593 -26.51945 -23.95193 -23.88710 -22.16909 -21.19930 -19.78716 -19.10863 -18.27609 -18.15823 -17.43232 -16.69598 -16.66358 -15.64340 -15.41351 -14.89013 -14.77390 -14.64274 -14.28237 -13.92739 -13.72712 -13.52357 -13.39705 -13.19486 -13.07460 -12.88185 -12.82887 -12.43766 -12.33339 -12.27018 -12.17332 -12.12995 -11.92055 -11.88761 -11.40654 -11.37016 -11.00940 -10.74172 -10.52778 -10.26180 -10.21602 -9.92941 -9.76402 -9.66958 -9.48256 -9.37763 -8.48393 -6.67576 -5.80198 -3.22276 0.32521 2.28837 2.38932 2.58003 3.26203 3.36068 3.44337 3.46696 3.59848 4.08378 4.24418 4.43383 4.49014 4.62564 4.83233 4.90170 5.05315 5.07160 5.16177 5.27882 5.32569 5.37830 5.41476 5.45225 5.54996 5.61769 5.79530 5.87393 5.97057 6.06405 6.16710 6.30838 6.48652 6.56895 6.65341 6.74822 6.81514 6.86700 6.99482 7.14253 7.34715 7.63662 7.79370 8.44552 9.20904 9.84355 10.40973 11.28384 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.028160 B = 0.002397 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.069410 B =11680.278792 C =11844.068289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.010 6.010 3 C 0.131 3.869 4 C -0.050 4.050 5 C 0.211 3.789 6 N -0.432 5.432 7 S 2.785 3.215 8 O -0.978 6.978 9 O -0.971 6.971 10 N -1.121 6.121 11 C 0.122 3.878 12 C -0.083 4.083 13 C -0.128 4.128 14 C 0.144 3.856 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.171 3.829 25 C -0.134 4.134 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.417 0.583 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.253 0.747 42 H 0.087 0.913 43 H 0.017 0.983 44 H 0.058 0.942 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 13.409 -16.895 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.848 5.848 3 C 0.004 3.996 4 C -0.092 4.092 5 C -0.108 4.108 6 N -0.109 5.109 7 S 2.792 3.208 8 O -0.962 6.962 9 O -0.954 6.954 10 N -0.884 5.884 11 C -0.004 4.004 12 C -0.104 4.104 13 C -0.168 4.168 14 C 0.018 3.982 15 N -0.316 5.316 16 C -0.379 4.379 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.549 5.549 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.045 3.955 25 C -0.174 4.174 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.158 14.390 -17.570 22.740 hybrid contribution -0.450 -0.856 0.900 1.321 sum -1.608 13.533 -16.669 21.531 Atomic orbital electron populations 1.21695 0.77851 1.04409 1.02692 1.57870 1.15807 1.21456 1.89705 1.21082 0.97909 0.86096 0.94537 1.19789 1.00499 0.88152 1.00761 1.28900 0.93726 0.94443 0.93734 1.81270 1.09639 1.12141 1.07862 1.01975 0.72845 0.72809 0.73150 1.93627 1.40496 1.85105 1.76985 1.93625 1.67167 1.57601 1.76991 1.55830 1.15947 1.84917 1.31666 1.21515 0.86935 0.99323 0.92633 1.21304 0.98917 0.96577 0.93562 1.22121 0.99787 0.95913 0.98940 1.20906 0.90480 0.97862 0.88999 1.44063 1.34607 1.05144 1.47753 1.19234 1.36695 0.85437 0.96569 0.91693 1.25045 1.02059 0.97348 0.95323 1.70037 1.47054 1.30047 1.07717 0.86236 0.79476 0.82808 0.78348 1.20254 1.21787 1.21568 1.20757 0.96864 0.86453 0.91425 1.22207 0.96490 0.99776 0.98975 0.92169 0.90478 0.89549 0.89082 0.88986 0.86558 0.86745 0.74791 0.90552 0.92188 0.91224 0.93135 0.92092 0.96631 0.92897 0.93729 0.89445 0.96480 0.92338 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 10.68 59.84 0.64 1.00 16 2 N -1.01 -6.09 3.24 -121.76 -0.39 -6.49 16 3 C 0.13 0.61 5.28 -4.04 -0.02 0.59 16 4 C -0.05 -0.21 6.02 -29.52 -0.18 -0.39 16 5 C 0.21 1.56 15.43 -20.76 -0.32 1.24 16 6 N -0.43 -4.67 18.54 42.15 0.78 -3.89 16 7 S 2.79 26.83 6.10 -107.50 -0.66 26.18 16 8 O -0.98 -11.43 17.11 -57.17 -0.98 -12.40 16 9 O -0.97 -12.49 16.21 -57.17 -0.93 -13.42 16 10 N -1.12 -10.72 5.57 -10.61 -0.06 -10.78 16 11 C 0.12 1.32 5.64 -4.04 -0.02 1.30 16 12 C -0.08 -1.19 2.18 -90.42 -0.20 -1.39 16 13 C -0.13 -2.07 5.28 -26.45 -0.14 -2.21 16 14 C 0.14 2.90 6.50 -3.71 -0.02 2.88 16 15 N -0.59 -14.36 2.99 -172.32 -0.52 -14.88 16 16 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 18 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 19 N -0.90 -25.72 11.20 55.49 0.62 -25.10 16 20 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.17 3.84 5.30 -3.71 -0.02 3.82 16 25 C -0.13 -2.27 5.36 -26.61 -0.14 -2.41 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.17 8.07 -51.93 -0.42 -0.25 16 28 H 0.09 0.49 7.02 -51.93 -0.36 0.12 16 29 H 0.09 0.27 8.11 -51.92 -0.42 -0.15 16 30 H 0.09 0.47 7.61 -51.93 -0.40 0.07 16 31 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.42 3.68 8.37 -34.47 -0.29 3.39 16 34 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.70 7.52 -51.93 -0.39 0.31 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -34.78 380.11 -9.27 -44.05 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.18 Total: -2.86 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.66 Total: -2.50 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.43 Total: -61.12 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -1.91 Total: -25.82 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 26.83 SS G_CDS: -0.66 Total: 26.18 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.78 -9.27 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351609345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.092 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds