Wall clock time and date at job start Tue Mar 31 2020 05:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30493 * 125.65237 * 2 1 4 4 C 1.34122 * 109.25720 * 180.28752 * 3 2 1 5 5 C 1.34662 * 108.02241 * 359.72288 * 4 3 2 6 6 N 1.35041 * 125.64892 * 179.81290 * 2 1 3 7 7 C 1.46506 * 126.39674 * 359.97438 * 6 2 1 8 8 C 1.53003 * 109.47013 * 84.71007 * 7 6 2 9 9 C 1.53001 * 109.46939 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46939 * 180.02562 * 9 8 7 11 11 N 1.46493 * 109.46985 * 180.02562 * 10 9 8 12 12 S 1.65601 * 119.99928 * 164.44471 * 11 10 9 13 13 O 1.42102 * 106.40179 * 176.31643 * 12 11 10 14 14 O 1.42092 * 106.40365 * 309.23350 * 12 11 10 15 15 N 1.65597 * 107.21705 * 62.77715 * 12 11 10 16 16 C 1.46498 * 119.99897 * 273.10739 * 15 12 11 17 17 C 1.46502 * 119.99876 * 93.11074 * 15 12 11 18 18 C 1.50699 * 109.47048 * 95.57389 * 17 15 12 19 19 H 1.08008 * 120.00327 * 4.71264 * 18 17 15 20 20 C 1.37878 * 120.00205 * 184.71618 * 18 17 15 21 21 N 1.31516 * 119.99911 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00305 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46930 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47487 * 119.99658 * 22 20 18 25 25 H 1.48506 * 109.47095 * 240.00079 * 22 20 18 26 26 H 1.08998 * 109.47704 * 270.18180 * 1 2 3 27 27 H 1.09000 * 109.46777 * 30.18354 * 1 2 3 28 28 H 1.08999 * 109.47066 * 150.17805 * 1 2 3 29 29 H 1.08008 * 125.99249 * 179.72130 * 4 3 2 30 30 H 1.07998 * 126.59508 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.46979 * 204.70719 * 7 6 2 32 32 H 1.08995 * 109.46962 * 324.70835 * 7 6 2 33 33 H 1.09000 * 109.47199 * 300.00213 * 8 7 6 34 34 H 1.09006 * 109.46694 * 60.00038 * 8 7 6 35 35 H 1.08999 * 109.46894 * 300.00215 * 9 8 7 36 36 H 1.08998 * 109.46499 * 60.00493 * 9 8 7 37 37 H 1.09000 * 109.47199 * 300.00560 * 10 9 8 38 38 H 1.09006 * 109.46694 * 60.00384 * 10 9 8 39 39 H 0.97005 * 120.00110 * 344.44543 * 11 10 9 40 40 H 1.09002 * 109.46815 * 90.00394 * 16 15 12 41 41 H 1.08994 * 109.47369 * 210.00027 * 16 15 12 42 42 H 1.08994 * 109.47521 * 330.00551 * 16 15 12 43 43 H 1.08997 * 109.47114 * 215.56683 * 17 15 12 44 44 H 1.08991 * 109.47504 * 335.57189 * 17 15 12 45 45 H 0.96993 * 119.99997 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0603 0.0000 4 6 3.5543 0.6818 -0.0064 5 6 3.5925 -0.6643 -0.0043 6 7 2.2940 -1.0973 0.0036 7 6 1.8424 -2.4911 0.0087 8 6 1.5582 -2.9403 -1.4261 9 6 1.0872 -4.3960 -1.4208 10 6 0.8035 -4.8454 -2.8556 11 7 0.3519 -6.2389 -2.8505 12 16 -0.3887 -6.8742 -4.1885 13 8 -0.6233 -8.2465 -3.9037 14 8 -1.4226 -5.9665 -4.5438 15 7 0.7133 -6.8347 -5.4239 16 6 0.8420 -5.6335 -6.2525 17 6 1.5595 -8.0011 -5.6882 18 6 0.9328 -8.8413 -6.7710 19 1 0.0385 -8.4990 -7.2706 20 6 1.5009 -10.0470 -7.1238 21 7 2.5901 -10.4636 -6.5157 22 14 0.7237 -11.0888 -8.4654 23 1 -0.4851 -10.4022 -8.9874 24 1 1.6985 -11.2829 -9.5687 25 1 0.3395 -12.4098 -7.9062 26 1 -0.3634 0.0033 1.0276 27 1 -0.3633 0.8884 -0.5167 28 1 -0.3633 -0.8916 -0.5111 29 1 4.4098 1.3410 -0.0122 30 1 4.4775 -1.2832 -0.0084 31 1 2.6187 -3.1229 0.4402 32 1 0.9327 -2.5760 0.6030 33 1 0.7820 -2.3083 -1.8576 34 1 2.4680 -2.8553 -2.0203 35 1 1.8637 -5.0275 -0.9894 36 1 0.1775 -4.4812 -0.8264 37 1 0.0272 -4.2138 -3.2874 38 1 1.7135 -4.7601 -3.4496 39 1 0.4867 -6.7896 -2.0633 40 1 1.5839 -4.9667 -5.8130 41 1 1.1577 -5.9167 -7.2565 42 1 -0.1197 -5.1231 -6.3044 43 1 2.5458 -7.6686 -6.0116 44 1 1.6559 -8.5937 -4.7786 45 1 2.9896 -11.3120 -6.7636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360425894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:20 Heat of formation + Delta-G solvation = -27.491311 kcal Electronic energy + Delta-G solvation = -25946.450905 eV Core-core repulsion = 22126.590629 eV Total energy + Delta-G solvation = -3819.860276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.36942 -37.17991 -36.58033 -35.53562 -35.19886 -34.91609 -32.46804 -32.10317 -31.97097 -27.97092 -27.80527 -27.01604 -25.11422 -23.84706 -22.34547 -21.84345 -21.64166 -19.99353 -18.92011 -17.45571 -17.24106 -16.74022 -16.45253 -16.17930 -16.05275 -15.62112 -14.99046 -14.78985 -14.31008 -14.19845 -13.88192 -13.56267 -13.40065 -13.31978 -13.27945 -12.82221 -12.71891 -12.56769 -12.37034 -12.23033 -12.12045 -11.80497 -11.63328 -11.49180 -11.25541 -11.18764 -11.14367 -11.10051 -10.72595 -10.54408 -10.21900 -10.06970 -9.88249 -9.78185 -9.39843 -8.61895 -8.47861 -8.10810 -6.09755 -4.13829 1.18414 1.75001 2.43842 2.89278 3.28752 3.36508 3.40949 3.46851 4.08325 4.14333 4.18931 4.25569 4.41992 4.45568 4.66068 4.70055 4.88814 4.91949 4.97837 5.06702 5.13231 5.17680 5.25428 5.29655 5.31950 5.40959 5.49388 5.57257 5.59749 5.72311 5.77574 5.93497 6.01461 6.02276 6.25681 6.49687 6.51757 6.89660 7.02831 7.22142 7.37095 7.58380 7.84668 7.87961 8.17064 8.89070 9.51782 10.98970 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024697 B = 0.002200 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.464971 B =12722.278786 C =13109.863625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.204 3.796 3 N -0.495 5.495 4 C -0.030 4.030 5 C -0.058 4.058 6 N -0.455 5.455 7 C 0.103 3.897 8 C -0.135 4.135 9 C -0.123 4.123 10 C 0.121 3.879 11 N -1.136 6.136 12 S 2.782 3.218 13 O -0.963 6.963 14 O -0.998 6.998 15 N -0.995 5.995 16 C 0.094 3.906 17 C 0.256 3.744 18 C -0.530 4.530 19 H 0.061 0.939 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.282 1.282 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.168 0.832 30 H 0.173 0.827 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.412 0.588 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.042 0.958 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 17.656 14.401 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 N -0.215 5.215 4 C -0.178 4.178 5 C -0.191 4.191 6 N -0.138 5.138 7 C -0.020 4.020 8 C -0.174 4.174 9 C -0.163 4.163 10 C -0.006 4.006 11 N -0.895 5.895 12 S 2.790 3.210 13 O -0.947 6.947 14 O -0.982 6.982 15 N -0.838 5.838 16 C -0.053 4.053 17 C 0.134 3.866 18 C -0.570 4.570 19 H 0.079 0.921 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.208 1.208 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.186 0.814 30 H 0.191 0.809 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.245 0.755 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.318 17.967 14.189 22.896 hybrid contribution 0.743 -1.673 -0.398 1.873 sum 0.425 16.294 13.791 21.351 Atomic orbital electron populations 1.20220 0.85013 1.04239 1.03473 1.23326 0.95748 0.81417 1.05297 1.70242 1.02344 1.28432 1.20452 1.22286 0.94778 0.92847 1.07911 1.22727 0.87120 0.96919 1.12292 1.45477 1.06509 1.07426 1.54378 1.21961 1.02079 0.79100 0.98823 1.21937 1.03122 0.96804 0.95579 1.21703 1.02373 0.95000 0.97199 1.21154 0.99921 0.82065 0.97426 1.56271 1.79911 1.20022 1.33271 1.01928 0.73531 0.72844 0.72722 1.93646 1.84312 1.32464 1.84304 1.93521 1.54362 1.66983 1.83312 1.57587 1.58122 1.22828 1.45288 1.21376 1.00671 0.86227 0.97040 1.19073 0.89529 0.80427 0.97553 1.21533 1.11755 1.04105 1.19572 0.92086 1.24946 0.94946 0.97338 0.96832 1.69923 1.20100 1.21569 1.41814 0.86449 0.79326 0.80331 0.81378 1.19631 1.20941 1.20772 0.90274 0.89129 0.90625 0.81431 0.80933 0.88688 0.88815 0.90578 0.90530 0.90680 0.90656 0.90645 0.91800 0.75538 0.94423 0.90350 0.91599 0.95030 0.93964 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.04 36.01 0.36 -0.09 16 2 C 0.20 1.97 7.90 -155.42 -1.23 0.74 16 3 N -0.50 -5.89 11.25 -10.82 -0.12 -6.01 16 4 C -0.03 -0.30 11.87 -17.82 -0.21 -0.51 16 5 C -0.06 -0.48 11.58 -16.56 -0.19 -0.67 16 6 N -0.45 -3.68 2.75 -113.91 -0.31 -3.99 16 7 C 0.10 0.55 5.68 -4.04 -0.02 0.52 16 8 C -0.14 -0.80 5.54 -26.73 -0.15 -0.95 16 9 C -0.12 -0.82 5.36 -26.73 -0.14 -0.96 16 10 C 0.12 1.23 6.26 -4.04 -0.03 1.21 16 11 N -1.14 -14.96 6.05 -10.61 -0.06 -15.02 16 12 S 2.78 52.59 6.09 -107.50 -0.65 51.93 16 13 O -0.96 -22.41 16.99 -57.18 -0.97 -23.38 16 14 O -1.00 -20.03 16.34 -57.18 -0.93 -20.96 16 15 N -1.00 -19.88 3.23 -123.06 -0.40 -20.28 16 16 C 0.09 1.53 10.69 59.85 0.64 2.17 16 17 C 0.26 6.29 5.10 -5.19 -0.03 6.26 16 18 C -0.53 -14.73 9.38 -34.44 -0.32 -15.05 16 19 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 22 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.37 7.33 -51.93 -0.38 -0.01 16 29 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.38 7.94 -51.93 -0.41 -0.03 16 33 H 0.08 0.48 7.63 -51.93 -0.40 0.08 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 38 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 39 H 0.41 4.64 8.66 -34.47 -0.30 4.34 16 40 H 0.04 0.49 8.05 -51.93 -0.42 0.07 16 41 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 42 H 0.07 1.02 7.05 -51.93 -0.37 0.65 16 43 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 44 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -36.85 388.97 -10.55 -47.40 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.25 Total: -1.33 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.42 Total: -5.70 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -0.16 Total: -70.50 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -1.91 Total: -44.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.65 Total: 51.93 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.85 -10.55 -47.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360425894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.909 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds