Wall clock time and date at job start Tue Mar 31 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35638 * 117.00024 * 2 1 4 4 C 1.40756 * 120.33410 * 359.97438 * 3 2 1 5 5 C 1.35001 * 120.04264 * 180.23494 * 4 3 2 6 6 N 1.36027 * 120.86477 * 359.57024 * 5 4 3 7 7 C 1.36665 * 120.88523 * 0.43245 * 6 5 4 8 8 C 1.37979 * 120.32925 * 180.02562 * 3 2 1 9 9 N 1.33329 * 108.60900 * 179.75170 * 7 6 5 10 10 C 1.32325 * 109.85357 * 0.02562 * 9 7 6 11 11 C 1.38510 * 108.25850 * 359.97438 * 10 9 7 12 12 C 1.41646 * 126.78931 * 179.97438 * 11 10 9 13 13 O 1.21806 * 119.99828 * 223.27434 * 12 11 10 14 14 N 1.34779 * 120.00454 * 43.26577 * 12 11 10 15 15 C 1.46965 * 120.58973 * 5.39157 * 14 12 11 16 16 C 1.53816 * 108.39589 * 124.75302 * 15 14 12 17 17 N 1.46962 * 108.57873 * 49.63957 * 16 15 14 18 18 C 1.36940 * 120.59313 * 124.67037 * 17 16 15 19 19 H 1.08003 * 119.99223 * 210.19784 * 18 17 16 20 20 C 1.38809 * 120.00443 * 30.19437 * 18 17 16 21 21 N 1.31623 * 119.99515 * 19.01662 * 20 18 17 22 22 Si 1.86791 * 120.00162 * 199.00892 * 20 18 17 23 23 H 1.48500 * 109.46997 * 60.00330 * 22 20 18 24 24 H 1.48503 * 109.47349 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47618 * 300.00331 * 22 20 18 26 26 C 1.46968 * 118.81223 * 304.64292 * 17 16 15 27 27 C 1.46957 * 120.59588 * 185.66356 * 14 12 11 28 28 H 1.08999 * 109.47385 * 299.99919 * 1 2 3 29 29 H 1.09000 * 109.47481 * 60.00063 * 1 2 3 30 30 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.97324 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.57024 * 179.74990 * 5 4 3 33 33 H 1.07996 * 120.39228 * 359.97438 * 8 3 2 34 34 H 1.07994 * 125.87412 * 179.97438 * 10 9 7 35 35 H 1.08992 * 109.61022 * 244.53628 * 15 14 12 36 36 H 1.08995 * 109.61044 * 5.05069 * 15 14 12 37 37 H 1.09002 * 109.74325 * 289.84640 * 16 15 14 38 38 H 1.09008 * 109.52916 * 169.30298 * 16 15 14 39 39 H 0.97001 * 119.99212 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.60528 * 295.48473 * 26 17 16 41 41 H 1.08997 * 109.75060 * 175.06131 * 26 17 16 42 42 H 1.08994 * 109.61482 * 354.95371 * 27 14 12 43 43 H 1.09002 * 109.60769 * 115.46444 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2850 2.3935 -0.0005 5 6 1.9040 3.5932 -0.0053 6 7 3.2617 3.6780 -0.0009 7 6 4.0349 2.5512 -0.0004 8 6 3.4222 1.2887 -0.0005 9 7 5.3175 2.9153 -0.0012 10 6 5.4099 4.2354 -0.0017 11 6 4.1281 4.7601 -0.0018 12 6 3.7727 6.1312 -0.0018 13 8 2.8764 6.5281 0.7213 14 7 4.4264 6.9969 -0.8016 15 6 5.4279 6.5161 -1.7637 16 6 5.0361 7.0179 -3.1639 17 7 4.7646 8.4601 -3.0855 18 6 5.4288 9.3395 -3.8983 19 1 5.6224 10.3467 -3.5599 20 6 5.8531 8.9365 -5.1570 21 7 5.3173 7.8764 -5.7239 22 14 7.1844 9.8988 -6.0463 23 1 8.4257 9.8956 -5.2312 24 1 7.4549 9.2684 -7.3634 25 1 6.7307 11.2978 -6.2516 26 6 3.7671 8.9415 -2.1194 27 6 4.1549 8.4390 -0.7232 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2062 2.3427 -0.0005 32 1 1.3136 4.4976 -0.0098 33 1 4.0218 0.3904 -0.0005 34 1 6.3270 4.8056 -0.0020 35 1 6.4100 6.9047 -1.4945 36 1 5.4484 5.4263 -1.7565 37 1 4.1425 6.4954 -3.5056 38 1 5.8566 6.8373 -3.8586 39 1 5.6141 7.5946 -6.6033 40 1 2.7833 8.5560 -2.3868 41 1 3.7465 10.0313 -2.1235 42 1 3.3345 8.6196 -0.0287 43 1 5.0484 8.9615 -0.3815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424682239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:24 Heat of formation + Delta-G solvation = 64.195033 kcal Electronic energy + Delta-G solvation = -28311.113701 eV Core-core repulsion = 24359.785291 eV Total energy + Delta-G solvation = -3951.328409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.98620 -40.02666 -39.34298 -36.84845 -36.60949 -33.92108 -33.32074 -31.61787 -30.64244 -30.30525 -29.26844 -27.62738 -26.71741 -24.45165 -23.99478 -23.04566 -22.67908 -22.08271 -20.70612 -19.26873 -18.33781 -17.78518 -17.31509 -16.81053 -16.45979 -16.03656 -15.84601 -15.55592 -15.12711 -14.78177 -14.73780 -14.34013 -13.88688 -13.72247 -13.56861 -13.52184 -13.31340 -13.25492 -12.87795 -12.50104 -12.34079 -11.88792 -11.71479 -11.61057 -11.36736 -10.83764 -10.80460 -10.57597 -10.43219 -10.29039 -10.22615 -10.06544 -9.87968 -9.61158 -9.05038 -8.62513 -8.34890 -7.70428 -6.73572 -5.89321 -3.34524 0.48020 0.80113 2.08858 2.37433 2.68531 3.23691 3.30045 3.33804 3.40225 3.40905 3.53113 4.09017 4.25769 4.35625 4.42551 4.64166 4.68758 4.72707 4.79926 5.01962 5.05353 5.22460 5.24825 5.31510 5.38793 5.65049 5.69031 5.75604 5.80616 5.88245 6.01777 6.08455 6.13258 6.30750 6.35274 6.40999 6.72085 6.74236 6.86024 6.87943 7.13763 7.36717 7.65289 7.69913 7.77671 8.33240 8.38115 9.08117 9.70838 10.29201 11.18564 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.002990 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.397413 B = 9363.748954 C = 9750.183748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.151 3.849 4 C -0.213 4.213 5 C 0.120 3.880 6 N -0.341 5.341 7 C 0.272 3.728 8 C -0.141 4.141 9 N -0.498 5.498 10 C 0.109 3.891 11 C -0.132 4.132 12 C 0.590 3.410 13 O -0.564 6.564 14 N -0.580 5.580 15 C 0.072 3.928 16 C 0.163 3.837 17 N -0.590 5.590 18 C -0.261 4.261 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.903 3.097 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.132 3.868 27 C 0.097 3.903 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.192 0.808 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.095 0.905 39 H 0.256 0.744 40 H 0.022 0.978 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 -13.341 11.729 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.099 3.901 4 C -0.235 4.235 5 C -0.006 4.006 6 N -0.013 5.013 7 C 0.033 3.967 8 C -0.163 4.163 9 N -0.218 5.218 10 C -0.049 4.049 11 C -0.245 4.245 12 C 0.378 3.622 13 O -0.446 6.446 14 N -0.311 5.311 15 C -0.052 4.052 16 C 0.036 3.964 17 N -0.312 5.312 18 C -0.391 4.391 19 H 0.085 0.915 20 C -0.192 4.192 21 N -0.542 5.542 22 Si 0.733 3.267 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.005 3.995 27 C -0.027 4.027 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.177 0.823 32 H 0.191 0.809 33 H 0.179 0.821 34 H 0.209 0.791 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.681 -13.847 11.891 19.802 hybrid contribution -0.252 1.140 -0.652 1.337 sum -7.933 -12.707 11.240 18.728 Atomic orbital electron populations 1.23183 0.77593 1.04558 1.01794 1.86036 1.21911 1.25581 1.88133 1.18807 0.91554 0.84417 0.95307 1.21021 1.01574 0.90436 1.10438 1.21595 0.81628 1.00497 0.96861 1.42610 1.05872 1.08122 1.44712 1.20519 0.86856 0.86690 1.02648 1.19341 0.91239 0.94913 1.10779 1.70556 1.14032 1.12969 1.24258 1.23177 0.95516 0.90090 0.96083 1.19889 0.90152 0.88657 1.25801 1.15508 0.82407 0.83672 0.80603 1.90792 1.31551 1.79548 1.42669 1.47883 1.40054 1.07453 1.35719 1.23034 0.90952 0.99095 0.92156 1.21168 1.00298 0.84116 0.90812 1.43975 1.43023 1.02597 1.41653 1.19119 1.30179 0.95365 0.94394 0.91549 1.25111 1.00104 0.98276 0.95743 1.70043 1.41363 1.27350 1.15417 0.86364 0.82226 0.79473 0.78667 1.20828 1.21604 1.20790 1.21290 0.92204 0.98046 0.87923 1.22285 1.01294 0.78754 1.00330 0.92225 0.92134 0.87726 0.82277 0.80920 0.82120 0.79097 0.91257 0.90351 0.95932 0.88693 0.93395 0.95984 0.91325 0.89825 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.71 10.49 -18.61 -0.20 -2.91 16 3 C 0.15 1.57 6.72 -38.73 -0.26 1.31 16 4 C -0.21 -2.01 8.98 -39.78 -0.36 -2.37 16 5 C 0.12 1.47 10.68 -16.84 -0.18 1.29 16 6 N -0.34 -5.13 2.97 -60.20 -0.18 -5.31 16 7 C 0.27 4.03 7.76 -156.00 -1.21 2.82 16 8 C -0.14 -1.71 10.09 -38.89 -0.39 -2.10 16 9 N -0.50 -7.88 11.25 -12.31 -0.14 -8.02 16 10 C 0.11 1.65 9.42 -17.24 -0.16 1.49 16 11 C -0.13 -2.17 5.84 -83.39 -0.49 -2.66 16 12 C 0.59 10.66 7.28 -14.96 -0.11 10.55 16 13 O -0.56 -11.27 16.14 5.09 0.08 -11.19 16 14 N -0.58 -10.50 2.94 -175.61 -0.52 -11.01 16 15 C 0.07 1.29 5.71 -3.36 -0.02 1.27 16 16 C 0.16 3.70 5.52 -3.37 -0.02 3.68 16 17 N -0.59 -14.19 2.95 -171.76 -0.51 -14.70 16 18 C -0.26 -6.86 9.54 -15.06 -0.14 -7.01 16 19 H 0.07 1.71 7.90 -52.48 -0.41 1.29 16 20 C 0.01 0.19 4.84 -17.43 -0.08 0.11 16 21 N -0.90 -25.27 11.46 55.49 0.64 -24.63 16 22 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.13 2.72 6.67 -3.60 -0.02 2.70 16 27 C 0.10 1.74 6.60 -3.60 -0.02 1.71 16 28 H 0.06 0.22 7.68 -51.93 -0.40 -0.18 16 29 H 0.06 0.24 7.68 -51.93 -0.40 -0.16 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.16 0.93 6.39 -52.48 -0.34 0.60 16 32 H 0.17 2.02 7.83 -52.48 -0.41 1.61 16 33 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.19 2.42 7.47 -52.49 -0.39 2.02 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.31 4.83 -51.93 -0.25 1.05 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 2.37 6.21 -51.92 -0.32 2.05 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.34 7.94 -51.93 -0.41 0.92 16 42 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -33.02 352.57 -8.39 -41.41 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.37 Total: 1.24 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -2.48 Total: 13.89 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.70 Total: -63.67 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.11 Total: -14.10 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.02 -8.39 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424682239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.601 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds