Wall clock time and date at job start Tue Mar 31 2020 05:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29949 * 126.28586 * 2 1 4 4 O 1.21303 * 110.24914 * 180.26448 * 3 2 1 5 5 C 1.33639 * 109.81253 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.55152 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47307 * 269.97538 * 6 5 4 8 8 H 1.09000 * 109.46925 * 54.99492 * 7 6 5 9 9 N 1.46898 * 109.46928 * 295.00031 * 7 6 5 10 10 C 1.46900 * 110.99895 * 154.99689 * 9 7 6 11 11 C 1.50702 * 109.46985 * 179.97438 * 10 9 7 12 12 O 1.21294 * 120.00417 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99956 * 179.97438 * 11 10 9 14 14 C 1.37099 * 120.00090 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99613 * 0.02562 * 14 13 11 16 16 C 1.38952 * 120.00005 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00006 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99921 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46996 * 90.00515 * 18 16 14 20 20 H 1.48499 * 109.47142 * 209.99980 * 18 16 14 21 21 H 1.48500 * 109.47412 * 330.00190 * 18 16 14 22 22 C 1.50701 * 109.47169 * 175.00237 * 7 6 5 23 23 C 1.38230 * 120.00181 * 79.72649 * 22 7 6 24 24 C 1.38233 * 119.99928 * 179.78793 * 23 22 7 25 25 C 1.38245 * 119.99896 * 0.43718 * 24 23 22 26 26 C 1.38233 * 119.99865 * 359.81737 * 25 24 23 27 27 C 1.38232 * 119.99963 * 359.97152 * 26 25 24 28 28 N 1.31128 * 106.89861 * 359.97438 * 5 4 3 29 29 H 1.09004 * 109.46802 * 269.69218 * 1 2 3 30 30 H 1.09001 * 109.46962 * 29.68458 * 1 2 3 31 31 H 1.08992 * 109.47269 * 149.69070 * 1 2 3 32 32 H 1.09004 * 109.47526 * 29.97499 * 6 5 4 33 33 H 1.08996 * 109.47163 * 149.97527 * 6 5 4 34 34 H 1.00900 * 111.00405 * 31.04735 * 9 7 6 35 35 H 1.08991 * 109.47377 * 299.99789 * 10 9 7 36 36 H 1.09001 * 109.47206 * 60.00058 * 10 9 7 37 37 H 0.97002 * 119.99892 * 0.02562 * 13 11 10 38 38 H 0.96995 * 120.00036 * 179.97438 * 17 16 14 39 39 H 1.07994 * 119.99937 * 359.97438 * 23 22 7 40 40 H 1.07999 * 120.00115 * 180.27671 * 24 23 22 41 41 H 1.08000 * 119.99533 * 179.83546 * 25 24 23 42 42 H 1.08003 * 119.99682 * 180.02562 * 26 25 24 43 43 H 1.08004 * 119.99678 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 -0.0053 5 6 3.5299 -0.6211 -0.0098 6 6 4.7969 -1.4369 -0.0164 7 6 5.2209 -1.7089 -1.4611 8 1 5.3093 -0.7643 -1.9978 9 7 4.2124 -2.5521 -2.1168 10 6 4.2335 -2.3618 -3.5733 11 6 3.1885 -3.2414 -4.2100 12 8 2.4940 -3.9561 -3.5185 13 7 3.0248 -3.2331 -5.5477 14 6 2.0737 -4.0329 -6.1270 15 1 1.4555 -4.6692 -5.5111 16 6 1.9054 -4.0248 -7.5062 17 7 0.9934 -4.7910 -8.0613 18 14 2.9743 -2.9236 -8.5711 19 1 4.1981 -3.6619 -8.9743 20 1 2.2171 -2.5213 -9.7835 21 1 3.3576 -1.7123 -7.8023 22 6 6.5507 -2.4179 -1.4694 23 6 6.6107 -3.7774 -1.2266 24 6 7.8300 -4.4285 -1.2385 25 6 8.9904 -3.7183 -1.4843 26 6 8.9309 -2.3579 -1.7219 27 6 7.7111 -1.7076 -1.7142 28 7 2.3030 -1.0840 -0.0063 29 1 -0.3633 -0.0055 1.0277 30 1 -0.3633 0.8928 -0.5089 31 1 -0.3633 -0.8871 -0.5186 32 1 5.5860 -0.8868 0.4963 33 1 4.6224 -2.3833 0.4953 34 1 3.2927 -2.3734 -1.7422 35 1 4.0218 -1.3184 -3.8065 36 1 5.2170 -2.6283 -3.9603 37 1 3.5799 -2.6613 -6.1008 38 1 0.8756 -4.7850 -9.0241 39 1 5.7046 -4.3314 -1.0306 40 1 7.8764 -5.4914 -1.0533 41 1 9.9433 -4.2266 -1.4910 42 1 9.8374 -1.8032 -1.9143 43 1 7.6647 -0.6446 -1.8994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429553463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:57 Heat of formation + Delta-G solvation = 66.783186 kcal Electronic energy + Delta-G solvation = -27690.684765 eV Core-core repulsion = 23739.468587 eV Total energy + Delta-G solvation = -3951.216179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.73011 -39.70254 -38.38140 -36.80845 -36.04177 -34.03277 -33.40450 -31.78700 -31.51995 -30.87212 -29.82926 -29.04989 -26.73147 -24.60577 -23.62057 -23.52104 -22.50739 -21.61662 -20.39804 -19.39157 -18.45811 -18.24076 -17.53169 -16.92818 -16.23900 -15.88564 -15.52353 -15.17813 -14.86420 -14.69732 -14.36071 -14.05663 -13.85706 -13.71903 -13.39607 -13.35589 -13.12595 -12.82331 -12.77666 -12.65717 -12.39515 -12.38654 -12.07676 -11.90518 -11.60946 -11.43542 -11.17608 -11.14526 -11.06611 -10.95379 -10.59229 -10.03408 -9.96770 -9.56258 -8.91931 -8.79685 -8.60138 -8.27695 -8.16577 -6.30302 -3.81476 0.94095 1.29812 1.42095 2.09450 2.60978 3.02885 3.07428 3.15239 3.46731 3.73210 3.74917 3.88094 3.99226 4.11061 4.51012 4.69012 4.76572 4.81812 4.90371 4.97177 5.07659 5.11661 5.17368 5.22486 5.24981 5.30658 5.47355 5.50911 5.53339 5.59305 5.68030 5.76622 5.78738 5.91132 5.92271 5.93725 6.07644 6.41724 6.53969 6.58409 6.97642 7.01921 7.51345 7.58775 8.02744 8.15207 8.60598 8.95804 9.43276 9.83488 10.82871 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.007485 B = 0.004348 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3739.832123 B = 6438.597078 C = 9210.666173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.173 3.827 3 N -0.388 5.388 4 O 0.075 5.925 5 C 0.175 3.825 6 C -0.027 4.027 7 C 0.130 3.870 8 H 0.059 0.941 9 N -0.661 5.661 10 C 0.048 3.952 11 C 0.451 3.549 12 O -0.560 6.560 13 N -0.591 5.591 14 C -0.304 4.304 15 H 0.120 0.880 16 C 0.042 3.958 17 N -0.881 5.881 18 Si 0.878 3.122 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.271 1.271 22 C -0.079 4.079 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.114 4.114 28 N -0.467 5.467 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.361 0.639 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.287 10.326 16.184 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 N -0.097 5.097 4 O 0.017 5.983 5 C -0.046 4.046 6 C -0.066 4.066 7 C 0.018 3.982 8 H 0.077 0.923 9 N -0.297 5.297 10 C -0.085 4.085 11 C 0.237 3.763 12 O -0.442 6.442 13 N -0.231 5.231 14 C -0.432 4.432 15 H 0.138 0.862 16 C -0.161 4.161 17 N -0.522 5.522 18 Si 0.705 3.295 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.196 1.196 22 C -0.080 4.080 23 C -0.095 4.095 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.145 4.145 27 C -0.133 4.133 28 N -0.201 5.201 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.185 0.815 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.202 0.798 38 H 0.084 0.916 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.404 9.719 16.451 22.781 hybrid contribution 0.555 1.661 -1.292 2.177 sum 12.960 11.381 15.159 22.962 Atomic orbital electron populations 1.20189 0.82819 1.05167 1.04228 1.25977 1.00757 0.83321 0.99909 1.74636 0.89354 1.23912 1.21840 1.85278 1.22497 1.24780 1.65769 1.28855 0.97176 0.82239 0.96320 1.20536 0.88059 0.99025 0.98969 1.20361 0.91054 0.94599 0.92166 0.92301 1.60128 1.10269 1.56123 1.03166 1.21752 1.00363 0.97587 0.88750 1.19630 0.87076 0.86957 0.82671 1.90577 1.48276 1.43625 1.61684 1.42200 1.34859 1.40126 1.05878 1.19430 1.12640 1.19662 0.91496 0.86246 1.25021 0.97081 0.97463 0.96520 1.69619 1.32564 1.38375 1.11595 0.86695 0.81016 0.80715 0.81106 1.19539 1.20175 1.19616 1.19603 0.92930 0.94439 1.01041 1.21170 0.98064 0.93885 0.96383 1.21235 0.92642 0.99992 1.00498 1.21164 0.98331 0.94452 0.99857 1.21031 0.97457 0.94796 1.01258 1.21013 0.92165 0.99682 1.00419 1.72009 0.99519 1.29187 1.19339 0.89334 0.89522 0.88438 0.86947 0.85798 0.81549 0.94038 0.89224 0.79754 0.91634 0.84597 0.86123 0.86477 0.86362 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.51 36.01 0.38 -0.29 16 2 C 0.17 2.32 8.22 -156.37 -1.28 1.04 16 3 N -0.39 -5.34 12.16 30.90 0.38 -4.96 16 4 O 0.07 0.93 11.31 18.11 0.20 1.14 16 5 C 0.17 2.08 7.08 -13.06 -0.09 1.99 16 6 C -0.03 -0.24 5.42 -27.88 -0.15 -0.40 16 7 C 0.13 1.44 2.23 -68.86 -0.15 1.29 16 8 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 9 N -0.66 -10.18 5.18 -109.22 -0.57 -10.75 16 10 C 0.05 0.83 5.96 -4.98 -0.03 0.80 16 11 C 0.45 10.45 7.82 -10.98 -0.09 10.36 16 12 O -0.56 -15.21 15.78 5.54 0.09 -15.12 16 13 N -0.59 -14.36 5.09 -10.96 -0.06 -14.41 16 14 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 15 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 16 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 17 N -0.88 -25.94 13.96 55.50 0.77 -25.16 16 18 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 22 C -0.08 -0.86 4.71 -104.62 -0.49 -1.35 16 23 C -0.08 -0.90 9.32 -39.59 -0.37 -1.27 16 24 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 26 C -0.13 -1.16 10.05 -39.59 -0.40 -1.56 16 27 C -0.11 -1.08 9.67 -39.58 -0.38 -1.47 16 28 N -0.47 -6.61 10.53 -9.87 -0.10 -6.71 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.36 6.17 6.31 -39.29 -0.25 5.93 16 35 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 36 H 0.09 1.41 8.00 -51.93 -0.42 1.00 16 37 H 0.37 7.95 5.76 -40.82 -0.24 7.72 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.14 1.74 7.73 -52.49 -0.41 1.33 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.12 0.91 8.04 -52.48 -0.42 0.49 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -34.61 371.36 -7.99 -42.59 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.48 Total: 14.73 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.10 Total: -1.87 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.42 Total: -62.00 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.29 Total: -13.99 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.61 -7.99 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429553463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.378 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds