Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99821 * 2 1 4 4 C 1.52998 * 109.46980 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46726 * 65.00211 * 4 3 2 6 6 C 1.37097 * 119.99826 * 269.71949 * 5 4 3 7 7 H 1.07998 * 120.00384 * 140.50361 * 6 5 4 8 8 C 1.38951 * 120.00022 * 320.50514 * 6 5 4 9 9 N 1.31410 * 119.99974 * 162.92219 * 8 6 5 10 10 Si 1.86796 * 120.00036 * 342.92279 * 8 6 5 11 11 H 1.48503 * 109.47370 * 95.49171 * 10 8 6 12 12 H 1.48504 * 109.47240 * 215.49012 * 10 8 6 13 13 H 1.48501 * 109.47301 * 335.48915 * 10 8 6 14 14 C 1.34773 * 119.99979 * 90.00170 * 5 4 3 15 15 O 1.21287 * 120.00359 * 354.18806 * 14 5 4 16 16 C 1.50709 * 119.99921 * 174.18913 * 14 5 4 17 17 N 1.46494 * 109.47139 * 184.23104 * 16 14 5 18 18 C 1.34520 * 126.74220 * 125.00231 * 17 16 14 19 19 N 1.30680 * 108.29374 * 179.97438 * 18 17 16 20 20 C 1.33977 * 109.78366 * 359.97438 * 19 18 17 21 21 C 1.48408 * 125.65377 * 180.02562 * 20 19 18 22 22 C 1.39321 * 120.11904 * 179.70372 * 21 20 19 23 23 C 1.38025 * 119.87630 * 179.70371 * 22 21 20 24 24 C 1.38323 * 120.11949 * 0.59577 * 23 22 21 25 25 C 1.38321 * 120.23906 * 359.67590 * 24 23 22 26 26 C 1.38016 * 120.12351 * 0.02891 * 25 24 23 27 27 N 1.31501 * 108.69454 * 359.75975 * 20 19 18 28 28 H 1.08993 * 109.47481 * 300.00144 * 1 2 3 29 29 H 1.09001 * 109.46812 * 60.00330 * 1 2 3 30 30 H 1.09000 * 109.47027 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47384 * 59.99633 * 3 2 1 32 32 H 1.09005 * 109.46976 * 299.99935 * 3 2 1 33 33 H 1.08997 * 109.47439 * 304.99785 * 4 3 2 34 34 H 1.08999 * 109.46806 * 184.99553 * 4 3 2 35 35 H 0.97002 * 119.99771 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.47257 * 304.23394 * 16 14 5 37 37 H 1.09004 * 109.46411 * 64.23239 * 16 14 5 38 38 H 1.07996 * 125.85195 * 359.97438 * 18 17 16 39 39 H 1.08007 * 120.06542 * 359.97438 * 22 21 20 40 40 H 1.07997 * 119.93712 * 180.29864 * 23 22 21 41 41 H 1.07998 * 119.88108 * 179.70599 * 24 23 22 42 42 H 1.07998 * 119.93710 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.06352 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1034 -0.7986 -1.3329 7 1 3.7999 -1.3162 -2.2308 8 6 4.6223 -1.5138 -0.2605 9 7 4.4414 -2.8134 -0.1884 10 14 5.5771 -0.6280 1.0785 11 1 4.6657 -0.3055 2.2057 12 1 6.6752 -1.5019 1.5642 13 1 6.1497 0.6277 0.5301 14 6 4.2633 1.3330 -2.3200 15 8 4.0561 2.5274 -2.2810 16 6 4.8412 0.7087 -3.5640 17 7 5.1559 1.7584 -4.5362 18 6 6.3447 1.9790 -5.1258 19 7 6.2211 3.0035 -5.9275 20 6 4.9652 3.4677 -5.8799 21 6 4.4396 4.6215 -6.6512 22 6 3.1063 5.0030 -6.5172 23 6 2.6243 6.0806 -7.2323 24 6 3.4591 6.7738 -8.0901 25 6 4.7822 6.3959 -8.2312 26 6 5.2762 5.3236 -7.5164 27 7 4.2740 2.7280 -5.0407 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5686 0.8427 34 1 3.9784 2.1766 0.0901 35 1 4.8040 -3.3127 0.5601 36 1 5.7509 0.1653 -3.3088 37 1 4.1152 0.0196 -3.9955 38 1 7.2467 1.4074 -4.9642 39 1 2.4522 4.4592 -5.8516 40 1 1.5922 6.3801 -7.1255 41 1 3.0767 7.6135 -8.6514 42 1 5.4298 6.9408 -8.9020 43 1 6.3095 5.0296 -7.6270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457206476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = 61.131468 kcal Electronic energy + Delta-G solvation = -27713.787563 eV Core-core repulsion = 23762.326307 eV Total energy + Delta-G solvation = -3951.461256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72351 -39.13945 -38.82553 -37.13168 -35.02494 -33.77035 -32.12196 -31.76229 -30.96938 -30.31754 -29.61887 -27.17932 -25.84859 -24.80328 -23.46950 -22.89668 -22.41440 -21.21714 -20.32242 -19.23645 -17.58624 -17.17391 -16.68244 -16.16425 -15.84764 -15.64950 -15.24591 -15.08262 -15.02396 -14.66374 -14.57225 -14.13961 -14.02239 -13.65859 -13.38230 -13.35216 -12.95712 -12.72035 -12.62030 -12.33720 -11.87221 -11.68185 -11.59855 -11.32967 -11.27023 -11.07098 -10.96033 -10.92311 -10.26100 -10.05545 -9.98495 -9.73211 -9.52207 -9.28843 -9.13869 -8.92487 -8.76301 -8.27494 -7.95733 -6.55552 -4.20661 1.02206 1.43193 2.09066 2.58602 2.97042 3.12583 3.15984 3.19570 3.46068 4.00318 4.03438 4.07049 4.21644 4.38012 4.73587 4.86742 4.93822 4.99232 5.10267 5.15239 5.48732 5.49751 5.52046 5.60345 5.66502 5.71339 5.76165 5.77989 5.85100 5.85967 5.88438 6.01160 6.08497 6.16668 6.25757 6.34501 6.49141 6.59136 6.60817 6.71082 6.96033 7.09391 7.18824 7.73712 7.93559 8.09298 8.35647 8.81119 9.16178 9.47963 10.54572 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.003126 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.661850 B = 8954.585795 C =10015.582113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.055 3.945 4 C 0.105 3.895 5 N -0.450 5.450 6 C -0.342 4.342 7 H 0.103 0.897 8 C 0.078 3.922 9 N -0.853 5.853 10 Si 0.878 3.122 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.264 1.264 14 C 0.465 3.535 15 O -0.575 6.575 16 C 0.127 3.873 17 N -0.351 5.351 18 C 0.251 3.749 19 N -0.542 5.542 20 C 0.233 3.767 21 C 0.002 3.998 22 C -0.087 4.087 23 C -0.125 4.125 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.082 4.082 27 N -0.265 5.265 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.276 0.724 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.219 0.781 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 9.828 -8.373 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.023 4.023 4 C -0.018 4.018 5 N -0.171 5.171 6 C -0.469 4.469 7 H 0.120 0.880 8 C -0.131 4.131 9 N -0.487 5.487 10 Si 0.707 3.293 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.188 1.188 14 C 0.252 3.748 15 O -0.458 6.458 16 C 0.003 3.997 17 N -0.142 5.142 18 C -0.046 4.046 19 N -0.269 5.269 20 C -0.046 4.046 21 C 0.000 4.000 22 C -0.107 4.107 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.146 4.146 26 C -0.102 4.102 27 N -0.093 5.093 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.235 0.765 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.147 10.156 -8.167 13.083 hybrid contribution 0.335 -0.031 1.241 1.286 sum -0.812 10.125 -6.926 12.294 Atomic orbital electron populations 1.22660 0.82926 1.02118 0.98793 1.88205 1.17768 1.26532 1.95035 1.22839 0.94741 0.85290 0.99435 1.21741 0.92486 0.98725 0.88888 1.43573 1.57309 1.06986 1.09233 1.18986 1.43544 0.78875 1.05448 0.87955 1.25281 0.95348 0.95072 0.97430 1.69714 1.40836 1.06991 1.31169 0.86920 0.79981 0.80205 0.82234 1.19996 1.21446 1.18793 1.20131 0.82305 0.86563 0.85759 1.90649 1.57197 1.14922 1.83041 1.21586 1.04862 0.86236 0.87056 1.50165 1.07713 1.24145 1.32144 1.25919 0.91628 0.95256 0.91783 1.70385 1.19272 1.12317 1.24935 1.22218 0.88578 0.97087 0.96698 1.17487 0.93485 0.92548 0.96516 1.21277 0.94449 0.96472 0.98467 1.21059 1.00007 0.95954 0.97302 1.21226 0.94016 0.99653 0.98496 1.21060 0.95766 0.97471 1.00279 1.21211 1.00107 0.94390 0.94542 1.78345 1.15856 1.01987 1.13128 0.95176 0.94853 0.90043 0.93938 0.93114 0.90906 0.89860 0.91389 0.85107 0.86971 0.76472 0.85080 0.85751 0.86095 0.85780 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.49 10.19 -35.23 -0.36 -7.85 16 3 C 0.05 1.07 6.28 37.16 0.23 1.31 16 4 C 0.10 2.24 4.52 -4.04 -0.02 2.22 16 5 N -0.45 -10.15 2.14 -114.81 -0.25 -10.40 16 6 C -0.34 -8.20 8.50 -14.93 -0.13 -8.33 16 7 H 0.10 2.56 7.45 -52.49 -0.39 2.17 16 8 C 0.08 1.92 5.38 -17.47 -0.09 1.83 16 9 N -0.85 -22.36 13.96 55.50 0.77 -21.59 16 10 Si 0.88 19.42 24.77 -169.99 -4.21 15.21 16 11 H -0.27 -5.96 6.76 56.52 0.38 -5.58 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.26 -5.79 7.07 56.52 0.40 -5.39 16 14 C 0.47 10.17 7.66 -10.98 -0.08 10.08 16 15 O -0.57 -14.03 15.32 5.55 0.09 -13.95 16 16 C 0.13 2.26 5.77 -5.19 -0.03 2.23 16 17 N -0.35 -6.35 3.43 -63.83 -0.22 -6.57 16 18 C 0.25 3.86 12.61 -90.70 -1.14 2.72 16 19 N -0.54 -9.31 10.82 -12.38 -0.13 -9.45 16 20 C 0.23 4.28 7.78 -156.62 -1.22 3.06 16 21 C 0.00 0.04 5.88 -104.90 -0.62 -0.58 16 22 C -0.09 -1.25 9.68 -39.26 -0.38 -1.63 16 23 C -0.13 -1.44 10.03 -39.63 -0.40 -1.84 16 24 C -0.12 -1.18 10.04 -39.52 -0.40 -1.58 16 25 C -0.13 -1.38 10.03 -39.63 -0.40 -1.77 16 26 C -0.08 -1.10 9.69 -39.26 -0.38 -1.48 16 27 N -0.26 -5.31 11.37 32.10 0.37 -4.95 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.61 3.14 -51.93 -0.16 1.45 16 34 H 0.08 1.72 7.51 -51.93 -0.39 1.33 16 35 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.13 1.98 8.01 -51.93 -0.42 1.56 16 37 H 0.11 1.92 7.77 -51.93 -0.40 1.52 16 38 H 0.22 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.13 2.00 7.83 -52.48 -0.41 1.59 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.71 7.84 -52.49 -0.41 1.30 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -32.50 368.61 -7.88 -40.37 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.55 Total: 5.75 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -3.94 Total: 7.86 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.54 Total: -52.95 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.27 Total: -21.80 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.21 Total: 15.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.50 -7.88 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.504 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds