Wall clock time and date at job start Tue Mar 31 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00373 * 2 1 4 4 H 1.48502 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46791 * 299.99722 * 3 2 1 6 6 H 1.48493 * 109.46940 * 59.99893 * 3 2 1 7 7 C 1.37884 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99529 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.52403 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.27863 * 182.44082 * 10 9 7 12 12 N 1.46850 * 109.52500 * 59.17898 * 11 10 9 13 13 C 1.46894 * 111.00222 * 174.16454 * 12 11 10 14 14 H 1.09004 * 110.66436 * 180.42805 * 13 12 11 15 15 C 1.54228 * 110.60943 * 57.48892 * 13 12 11 16 16 C 1.51314 * 103.55560 * 241.48450 * 15 13 12 17 17 O 1.21223 * 125.40024 * 180.02562 * 16 15 13 18 18 N 1.33884 * 109.20823 * 0.02562 * 16 15 13 19 19 C 1.39766 * 122.76487 * 180.26823 * 18 16 15 20 20 C 1.39135 * 120.07731 * 167.15118 * 19 18 16 21 21 N 1.31992 * 119.91239 * 179.75499 * 20 19 18 22 22 C 1.32228 * 120.06439 * 0.49753 * 21 20 19 23 23 C 1.38251 * 120.15358 * 359.75765 * 22 21 20 24 24 N 1.32189 * 120.08749 * 359.97438 * 23 22 21 25 25 C 1.33882 * 114.47235 * 359.97438 * 18 16 15 26 26 O 1.21216 * 125.39411 * 179.97438 * 25 18 16 27 27 C 1.46851 * 111.19368 * 298.25969 * 12 11 10 28 28 C 1.53033 * 109.52696 * 61.74381 * 27 12 11 29 29 H 0.97006 * 119.99945 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.57137 * 300.15971 * 9 7 2 31 31 H 1.09003 * 109.49993 * 62.50025 * 10 9 7 32 32 H 1.08997 * 109.49884 * 302.38245 * 10 9 7 33 33 H 1.09000 * 109.46281 * 299.16430 * 11 10 9 34 34 H 1.08999 * 109.46278 * 179.19589 * 11 10 9 35 35 H 1.08993 * 110.60357 * 0.02562 * 15 13 12 36 36 H 1.08995 * 110.60335 * 122.97192 * 15 13 12 37 37 H 1.08004 * 120.04564 * 359.97438 * 20 19 18 38 38 H 1.08002 * 119.92517 * 179.73477 * 22 21 20 39 39 H 1.08001 * 119.95636 * 179.97438 * 23 22 21 40 40 H 1.09007 * 109.45940 * 181.75865 * 27 12 11 41 41 H 1.08999 * 109.46178 * 301.71877 * 27 12 11 42 42 H 1.09000 * 109.50760 * 180.87957 * 28 27 12 43 43 H 1.09002 * 109.50516 * 60.75349 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2448 -3.6640 0.0005 11 6 1.4749 -4.9851 -0.0610 12 7 0.6541 -5.0186 -1.2782 13 6 0.0078 -6.3276 -1.4415 14 1 -0.5938 -6.3489 -2.3502 15 6 -0.8574 -6.6632 -0.2096 16 6 -0.2222 -7.9229 0.3374 17 8 -0.5978 -8.5306 1.3167 18 7 0.8207 -8.2600 -0.4316 19 6 1.6102 -9.3865 -0.1841 20 6 2.5030 -9.8383 -1.1508 21 7 3.2505 -10.8996 -0.9117 22 6 3.1441 -11.5387 0.2410 23 6 2.2540 -11.0953 1.2014 24 7 1.5063 -10.0299 0.9704 25 6 1.0413 -7.4326 -1.4608 26 8 1.9288 -7.5498 -2.2781 27 6 -0.3396 -3.9374 -1.2784 28 6 0.3761 -2.5849 -1.2533 29 1 -0.4850 0.8401 -0.0004 30 1 0.6211 -2.5572 0.8883 31 1 2.8419 -3.6328 0.9119 32 1 2.8996 -3.5836 -0.8671 33 1 0.8306 -5.0711 0.8140 34 1 2.1802 -5.8161 -0.0755 35 1 -0.8086 -5.8587 0.5241 36 1 -1.8894 -6.8515 -0.5056 37 1 2.5870 -9.3192 -2.0941 38 1 3.7537 -12.4094 0.4325 39 1 2.1694 -11.6200 2.1415 40 1 -0.9523 -4.0074 -2.1772 41 1 -0.9754 -4.0283 -0.3977 42 1 -0.3618 -1.7829 -1.2376 43 1 1.0016 -2.4876 -2.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540977802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:46 Heat of formation + Delta-G solvation = 17.340140 kcal Electronic energy + Delta-G solvation = -28722.256794 eV Core-core repulsion = 24768.896603 eV Total energy + Delta-G solvation = -3953.360190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.91998 -40.97837 -38.98936 -38.40903 -36.20567 -34.98101 -34.25992 -32.60564 -31.17493 -30.05291 -29.49648 -26.71495 -25.50260 -25.28282 -24.41611 -22.80557 -22.30502 -21.27385 -20.41928 -18.77307 -18.36095 -17.79674 -17.47980 -17.28994 -16.41307 -16.20085 -15.83649 -15.43518 -15.03241 -14.78948 -14.68458 -14.50446 -14.43503 -13.95308 -13.78475 -13.40794 -13.08854 -12.73926 -12.56140 -12.32880 -11.99450 -11.91270 -11.85702 -11.58009 -11.08299 -11.04156 -11.00070 -10.81412 -10.55521 -10.38751 -10.35796 -10.05234 -9.56577 -9.41191 -9.17384 -9.11668 -8.83643 -8.36944 -8.18511 -6.04392 -4.09040 0.29472 0.73514 1.21847 1.78942 2.39605 3.27397 3.35956 3.36460 3.40235 3.56365 3.81262 3.88753 3.96367 4.00389 4.07211 4.28982 4.41229 4.64181 4.75314 4.77022 5.05693 5.21538 5.26357 5.27479 5.33516 5.39649 5.59824 5.83317 5.93793 5.96298 6.06882 6.21426 6.37167 6.44578 6.68437 6.85053 6.87025 6.91477 6.98921 7.16788 7.33095 7.37377 7.38767 7.47503 7.70736 7.93475 8.04411 8.40058 8.94287 9.56023 11.02102 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.002928 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.353762 B = 9559.426581 C = 9855.906593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.104 4.104 11 C 0.049 3.951 12 N -0.506 5.506 13 C 0.062 3.938 14 H 0.140 0.860 15 C -0.195 4.195 16 C 0.526 3.474 17 O -0.438 6.438 18 N -0.514 5.514 19 C 0.281 3.719 20 C 0.049 3.951 21 N -0.417 5.417 22 C 0.031 3.969 23 C 0.077 3.923 24 N -0.433 5.433 25 C 0.540 3.460 26 O -0.447 6.447 27 C 0.056 3.944 28 C -0.106 4.106 29 H 0.259 0.741 30 H 0.023 0.977 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.051 0.949 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.197 0.803 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.099 0.901 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.369 -19.834 -1.409 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.142 4.142 11 C -0.078 4.078 12 N -0.231 5.231 13 C -0.051 4.051 14 H 0.158 0.842 15 C -0.237 4.237 16 C 0.314 3.686 17 O -0.304 6.304 18 N -0.254 5.254 19 C 0.052 3.948 20 C -0.114 4.114 21 N -0.131 5.131 22 C -0.129 4.129 23 C -0.084 4.084 24 N -0.151 5.151 25 C 0.328 3.672 26 O -0.313 6.313 27 C -0.070 4.070 28 C -0.144 4.144 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.214 0.786 38 H 0.193 0.807 39 H 0.195 0.805 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.117 0.883 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.942 -19.971 -1.724 20.067 hybrid contribution -0.058 0.639 0.910 1.114 sum -1.000 -19.331 -0.814 19.374 Atomic orbital electron populations 1.69856 1.05842 1.26330 1.51099 1.24953 0.94863 0.99052 0.95079 0.86567 0.80225 0.83873 0.77530 1.19822 1.21027 1.21141 1.21210 0.92983 0.90496 1.50135 0.92638 1.18708 0.92656 0.91766 0.93997 1.21676 0.98816 0.92836 1.00873 1.22334 0.95661 1.00292 0.89528 1.62235 1.22959 0.99047 1.38844 1.22591 0.92255 0.90362 0.99889 0.84222 1.23380 1.02830 0.96531 1.00946 1.21025 0.78868 0.86542 0.82176 1.90804 1.62004 1.55365 1.22233 1.44634 1.28692 1.23127 1.28970 1.19614 0.93348 0.89415 0.92450 1.24347 0.92229 0.93950 1.00848 1.68604 1.19285 1.05184 1.20007 1.23859 0.98214 1.00446 0.90401 1.23722 0.91679 0.92110 1.00852 1.68055 1.22162 1.07223 1.17688 1.21018 0.85313 0.82339 0.78506 1.90653 1.31090 1.72106 1.37482 1.22434 0.92776 0.92166 0.99669 1.21724 1.00465 0.92453 0.99755 0.93079 0.95924 0.92804 0.92001 0.94792 0.93062 0.85070 0.85349 0.78649 0.80723 0.80519 0.91537 0.94796 0.88333 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.16 11.37 55.43 0.63 -23.53 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.40 8.56 -34.44 -0.29 -13.70 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.09 2.16 -91.65 -0.20 0.89 16 10 C -0.10 -2.07 5.32 -26.65 -0.14 -2.21 16 11 C 0.05 0.81 4.78 -3.83 -0.02 0.79 16 12 N -0.51 -7.64 4.69 -226.94 -1.07 -8.71 16 13 C 0.06 0.71 3.22 -67.92 -0.22 0.49 16 14 H 0.14 1.23 8.13 -51.93 -0.42 0.80 16 15 C -0.20 -2.01 5.67 -26.94 -0.15 -2.17 16 16 C 0.53 6.86 8.01 -11.08 -0.09 6.77 16 17 O -0.44 -6.91 16.45 5.61 0.09 -6.81 16 18 N -0.51 -6.72 2.78 -61.04 -0.17 -6.89 16 19 C 0.28 3.81 7.31 -154.12 -1.13 2.68 16 20 C 0.05 0.62 10.35 -17.15 -0.18 0.45 16 21 N -0.42 -4.88 10.49 -12.90 -0.14 -5.01 16 22 C 0.03 0.27 11.21 -17.38 -0.19 0.07 16 23 C 0.08 0.73 11.22 -17.39 -0.20 0.53 16 24 N -0.43 -5.78 8.83 -12.11 -0.11 -5.89 16 25 C 0.54 7.01 5.88 -11.08 -0.07 6.94 16 26 O -0.45 -6.59 14.74 5.61 0.08 -6.51 16 27 C 0.06 0.89 5.13 -3.83 -0.02 0.87 16 28 C -0.11 -2.23 5.12 -26.65 -0.14 -2.37 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.03 0.55 6.43 -51.93 -0.33 0.21 16 34 H 0.05 0.83 6.84 -51.93 -0.36 0.48 16 35 H 0.13 1.49 5.31 -51.93 -0.28 1.21 16 36 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.20 2.51 5.32 -52.48 -0.28 2.23 16 38 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.07 0.92 8.12 -51.92 -0.42 0.50 16 41 H 0.03 0.53 6.96 -51.93 -0.36 0.16 16 42 H 0.10 2.34 6.17 -51.93 -0.32 2.02 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -31.52 345.65 -8.88 -40.40 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.27 Total: 0.46 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -3.12 Total: 1.58 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.85 Total: -50.03 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.17 Total: -13.32 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.52 -8.88 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540977802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.741 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds