Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.52999 * 109.46988 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46988 * 179.97438 * 20 19 18 22 22 N 1.46500 * 109.47408 * 180.02562 * 21 20 19 23 23 C 1.36881 * 126.39968 * 89.99861 * 22 21 20 24 24 C 1.34664 * 106.81771 * 180.02562 * 23 22 21 25 25 N 1.34129 * 108.02125 * 359.97438 * 24 23 22 26 26 C 1.30501 * 109.25569 * 359.72205 * 25 24 23 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 32 32 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 33 33 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 34 34 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 35 35 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 36 36 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 37 37 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 38 38 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 39 39 H 1.08998 * 109.47436 * 299.99584 * 20 19 18 40 40 H 1.08998 * 109.47371 * 60.00375 * 20 19 18 41 41 H 1.08999 * 109.47181 * 300.00234 * 21 20 19 42 42 H 1.09004 * 109.47142 * 59.99999 * 21 20 19 43 43 H 1.08005 * 126.58943 * 359.96170 * 23 22 21 44 44 H 1.08002 * 125.99133 * 180.02562 * 24 23 22 45 45 H 1.07993 * 125.65158 * 180.28736 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 -0.2376 -0.0739 6.3585 21 6 -0.7795 0.7688 7.5149 22 7 -1.5892 -0.0754 8.3968 23 6 -1.1417 -0.7826 9.4800 24 6 -2.2100 -1.4163 10.0001 25 7 -3.2809 -1.1041 9.2551 26 6 -2.9176 -0.2963 8.2967 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1611 -3.4845 31 1 2.4158 -2.7376 0.9718 32 1 1.6238 -2.2851 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 1.9053 1.7753 3.4681 35 1 0.3187 -0.4565 3.7178 36 1 1.7669 -0.8422 4.6782 37 1 1.4406 1.2293 6.0017 38 1 -0.0075 1.6149 5.0412 39 1 -1.0697 -0.4950 5.7943 40 1 0.3780 -0.8812 6.7551 41 1 0.0529 1.1896 8.0790 42 1 -1.3950 1.5764 7.1187 43 1 -0.1266 -0.8250 9.8465 44 1 -2.2057 -2.0619 10.8659 45 1 -3.5707 0.1233 7.5459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554677641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = -21.172892 kcal Electronic energy + Delta-G solvation = -26262.945604 eV Core-core repulsion = 22443.359315 eV Total energy + Delta-G solvation = -3819.586289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.28646 -37.17711 -36.64544 -36.19601 -35.27344 -34.89887 -32.61322 -32.05425 -29.72024 -29.13960 -27.79525 -25.63950 -25.16563 -23.92843 -21.91433 -21.60644 -21.12235 -20.79881 -18.80970 -17.74838 -17.29237 -16.85930 -16.47583 -16.14373 -15.88161 -15.39611 -15.03725 -14.73683 -14.34776 -14.21665 -13.84679 -13.59765 -13.51609 -13.27060 -13.02026 -12.88491 -12.69974 -12.19246 -12.05146 -11.85434 -11.73833 -11.54521 -11.39203 -11.31180 -11.23485 -11.17498 -11.00293 -10.84433 -10.50516 -10.30282 -10.24446 -10.05363 -9.90603 -9.41184 -9.27548 -8.80238 -8.48222 -8.02143 -6.10342 -4.16700 1.15648 1.77442 2.45842 2.92696 3.27363 3.33841 3.36302 3.44484 4.06354 4.16121 4.24167 4.37958 4.45850 4.51075 4.68828 4.70874 4.87958 4.92427 5.04391 5.16050 5.21312 5.25378 5.32526 5.43216 5.44122 5.54877 5.71934 5.79069 5.97830 6.01623 6.08729 6.32448 6.45598 6.58006 6.71586 6.74791 6.88298 6.96919 7.08156 7.43955 7.60018 7.75584 7.80777 8.00698 8.24401 8.85633 9.49246 10.95399 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.002399 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.683745 B =11667.154210 C =12270.558461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.780 3.220 15 O -0.997 6.997 16 O -0.974 6.974 17 N -1.135 6.135 18 C 0.122 3.878 19 C -0.123 4.123 20 C -0.135 4.135 21 C 0.104 3.896 22 N -0.458 5.458 23 C -0.057 4.057 24 C -0.033 4.033 25 N -0.498 5.498 26 C 0.181 3.819 27 H 0.033 0.967 28 H 0.010 0.990 29 H 0.093 0.907 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.173 0.827 44 H 0.168 0.832 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 0.444 20.181 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.789 3.211 15 O -0.980 6.980 16 O -0.958 6.958 17 N -0.893 5.893 18 C -0.005 4.005 19 C -0.162 4.162 20 C -0.174 4.174 21 C -0.019 4.019 22 N -0.141 5.141 23 C -0.190 4.190 24 C -0.181 4.181 25 N -0.216 5.216 26 C -0.101 4.101 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.244 0.756 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.190 0.810 44 H 0.185 0.815 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.732 0.199 20.070 20.621 hybrid contribution 0.670 0.236 -1.044 1.263 sum -4.062 0.435 19.026 19.460 Atomic orbital electron populations 1.22117 0.98301 0.99685 1.00593 1.18729 0.91243 0.92992 0.80511 0.92355 1.21331 1.31545 1.13009 0.90033 0.91954 1.24914 0.94950 0.95034 0.99035 1.69855 1.36537 1.22769 1.23791 0.86489 0.78666 0.79958 0.82246 1.20555 1.19884 1.21179 1.57678 1.70022 1.19763 1.35792 1.21160 1.01791 0.82198 0.98603 1.01929 0.73622 0.73171 0.72414 1.93535 1.69118 1.60779 1.74592 1.93618 1.74338 1.55996 1.71847 1.56229 1.62607 1.17304 1.53192 1.21153 0.95015 0.93348 0.91019 1.21696 0.99810 0.98639 0.96101 1.21926 1.00717 0.98940 0.95808 1.21978 0.95765 0.92838 0.91287 1.45647 1.09093 1.36434 1.22910 1.22763 1.01229 1.02058 0.92908 1.22318 0.88643 1.04688 1.02440 1.70300 1.30584 1.14603 1.06156 1.25040 0.82863 1.00900 1.01315 0.94779 0.97110 0.88871 0.92700 0.93219 0.93479 0.90960 0.75568 0.91670 0.90698 0.90772 0.90630 0.90476 0.90653 0.88882 0.88559 0.81006 0.81496 0.77983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.95 37.16 0.33 -2.88 16 2 C 0.27 6.36 2.62 -69.09 -0.18 6.18 16 3 H 0.06 1.54 6.91 -51.92 -0.36 1.18 16 4 C -0.52 -13.77 8.37 -34.44 -0.29 -14.06 16 5 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.42 11.32 55.43 0.63 -23.80 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.99 -19.63 3.12 -115.86 -0.36 -19.99 16 13 C 0.11 1.86 9.53 59.85 0.57 2.43 16 14 S 2.78 51.54 6.09 -107.50 -0.66 50.88 16 15 O -1.00 -19.81 16.68 -57.17 -0.95 -20.76 16 16 O -0.97 -21.90 16.70 -57.17 -0.95 -22.86 16 17 N -1.13 -14.78 6.05 -10.61 -0.06 -14.85 16 18 C 0.12 1.24 6.25 -4.04 -0.03 1.21 16 19 C -0.12 -0.81 5.36 -26.73 -0.14 -0.95 16 20 C -0.13 -0.77 5.54 -26.73 -0.15 -0.92 16 21 C 0.10 0.49 6.15 -4.04 -0.02 0.47 16 22 N -0.46 -3.36 2.75 -118.58 -0.33 -3.69 16 23 C -0.06 -0.44 11.58 -16.56 -0.19 -0.63 16 24 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 25 N -0.50 -5.65 11.25 -14.67 -0.17 -5.82 16 26 C 0.18 1.58 12.56 -90.37 -1.14 0.44 16 27 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.66 7.79 -51.93 -0.40 0.25 16 33 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 34 H 0.41 4.58 8.65 -34.47 -0.30 4.28 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -34.89 382.58 -10.72 -45.61 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.07 Total: 1.22 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.54 Total: -7.64 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -0.29 Total: -68.14 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.91 Total: -43.62 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 51.54 SS G_CDS: -0.66 Total: 50.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.89 -10.72 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554677641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.438 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds