Wall clock time and date at job start Tue Mar 31 2020 04:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38841 * 125.50813 * 2 1 4 4 C 1.38700 * 107.67898 * 179.97438 * 3 2 1 5 5 N 1.34152 * 132.25428 * 180.02562 * 4 3 2 6 6 C 1.30897 * 121.17081 * 179.73974 * 5 4 3 7 7 C 1.41549 * 120.07331 * 0.49711 * 6 5 4 8 8 C 1.47593 * 120.50855 * 179.76831 * 7 6 5 9 9 O 1.21581 * 120.00304 * 224.68096 * 8 7 6 10 10 N 1.34775 * 119.99895 * 44.68295 * 8 7 6 11 11 C 1.47425 * 125.64635 * 355.20716 * 10 8 7 12 12 C 1.54915 * 104.83214 * 155.90658 * 11 10 8 13 13 C 1.55158 * 101.61643 * 36.99046 * 12 11 10 14 14 O 1.42905 * 110.71904 * 82.87877 * 13 12 11 15 15 C 1.50693 * 110.72198 * 206.15372 * 13 12 11 16 16 H 1.08005 * 120.00100 * 0.02562 * 15 13 12 17 17 C 1.37881 * 120.00443 * 179.97438 * 15 13 12 18 18 N 1.31521 * 119.99221 * 359.97438 * 17 15 13 19 19 Si 1.86789 * 120.00348 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47270 * 90.00215 * 19 17 15 21 21 H 1.48503 * 109.47179 * 210.00043 * 19 17 15 22 22 H 1.48497 * 109.47206 * 330.00238 * 19 17 15 23 23 C 1.47023 * 125.65262 * 175.24789 * 10 8 7 24 24 C 1.38079 * 118.98840 * 359.49856 * 7 6 5 25 25 C 1.50696 * 120.55270 * 180.26740 * 24 7 6 26 26 N 1.36068 * 118.88673 * 0.25161 * 24 7 6 27 27 N 1.31293 * 125.50382 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46868 * 90.00154 * 1 2 3 29 29 H 1.09004 * 109.47292 * 210.00048 * 1 2 3 30 30 H 1.09003 * 109.47038 * 330.00022 * 1 2 3 31 31 H 1.08001 * 126.15952 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.97027 * 180.27276 * 6 5 4 33 33 H 1.08996 * 110.36747 * 37.06966 * 11 10 8 34 34 H 1.08995 * 110.36738 * 274.74314 * 11 10 8 35 35 H 1.08996 * 111.00247 * 155.08388 * 12 11 10 36 36 H 1.08992 * 111.00428 * 278.89586 * 12 11 10 37 37 H 0.96699 * 113.99908 * 180.02562 * 14 13 12 38 38 H 0.97000 * 119.98990 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.88039 * 300.44637 * 23 10 8 40 40 H 1.09001 * 109.87863 * 61.44794 * 23 10 8 41 41 H 1.09002 * 109.46779 * 84.28524 * 25 24 7 42 42 H 1.08994 * 109.47037 * 204.28196 * 25 24 7 43 43 H 1.08994 * 109.47674 * 324.28631 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3134 1.1302 0.0000 4 6 3.6338 0.7055 0.0006 5 7 4.7966 1.3746 0.0013 6 6 5.9424 0.7418 0.0068 7 6 5.9711 -0.6734 0.0016 8 6 7.2576 -1.3968 0.0027 9 8 7.4229 -2.3445 -0.7407 10 7 8.2493 -1.0067 0.8278 11 6 8.2218 0.1786 1.7039 12 6 9.2296 -0.1415 2.8360 13 6 10.3375 -0.9035 2.0618 14 8 11.2383 0.0126 1.4361 15 6 11.0798 -1.8413 2.9784 16 1 10.8058 -1.9069 4.0211 17 6 12.1081 -2.6167 2.4860 18 7 12.4407 -2.5380 1.2159 19 14 13.0286 -3.7787 3.6224 20 1 12.3603 -5.1048 3.6214 21 1 14.4279 -3.9293 3.1485 22 1 13.0295 -3.2258 5.0006 23 6 9.5381 -1.6923 1.0027 24 6 4.7771 -1.3670 0.0012 25 6 4.7666 -2.8739 0.0018 26 7 3.6104 -0.6669 0.0006 27 7 2.2695 -1.0688 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9737 2.1554 -0.0004 32 1 6.8670 1.2999 0.0117 33 1 7.2228 0.3233 2.1151 34 1 8.5383 1.0646 1.1536 35 1 9.6220 0.7734 3.2800 36 1 8.7752 -0.7780 3.5952 37 1 11.9498 -0.4134 0.9386 38 1 13.1644 -3.0832 0.8696 39 1 9.3714 -2.7123 1.3487 40 1 10.0819 -1.7058 0.0581 41 1 4.8658 -3.2375 1.0246 42 1 3.8276 -3.2308 -0.4211 43 1 5.5987 -3.2434 -0.5974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:18 Heat of formation + Delta-G solvation = 35.058123 kcal Electronic energy + Delta-G solvation = -28343.098249 eV Core-core repulsion = 24390.506369 eV Total energy + Delta-G solvation = -3952.591881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.53731 -39.92283 -38.14206 -37.28961 -35.09017 -34.43780 -32.55078 -32.25607 -30.46554 -29.80424 -28.82732 -28.47115 -27.78014 -25.27731 -24.13270 -23.02515 -22.40268 -20.70979 -19.78371 -19.26638 -18.48071 -17.41363 -17.27682 -16.57842 -16.29265 -15.66312 -15.39712 -14.98083 -14.69463 -14.49185 -14.05288 -13.95001 -13.53026 -13.32139 -13.30881 -13.18028 -12.97963 -12.94616 -12.75344 -12.46612 -12.42758 -12.21527 -11.72892 -11.59311 -11.35374 -11.14228 -10.90574 -10.77931 -10.72365 -10.58461 -10.27247 -10.22566 -9.62759 -9.47517 -9.43534 -8.75972 -8.43156 -8.17257 -7.99781 -6.38350 -4.47093 0.29532 0.53644 1.70746 2.26934 2.85719 3.14924 3.23310 3.24262 3.26706 3.40132 3.65631 3.83231 4.06839 4.19569 4.52520 4.68437 4.78859 4.89637 5.09076 5.11629 5.21243 5.24929 5.28724 5.34213 5.35541 5.45721 5.55876 5.67738 5.69668 5.85388 5.90744 5.92705 5.99637 6.19065 6.35827 6.38076 6.63218 6.69285 6.75140 7.13012 7.22870 7.23678 7.43386 7.64606 7.86401 7.94356 8.37954 8.56626 9.22018 9.33842 10.69401 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.025332 B = 0.002883 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.041829 B = 9709.298613 C =10102.761284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.117 3.883 3 C -0.267 4.267 4 C 0.266 3.734 5 N -0.473 5.473 6 C 0.214 3.786 7 C -0.240 4.240 8 C 0.584 3.416 9 O -0.537 6.537 10 N -0.597 5.597 11 C 0.094 3.906 12 C -0.117 4.117 13 C 0.250 3.750 14 O -0.585 6.585 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.895 5.895 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.101 3.899 24 C 0.257 3.743 25 C -0.139 4.139 26 N -0.312 5.312 27 N -0.311 5.311 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.387 0.613 38 H 0.272 0.728 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.179 5.167 -1.377 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 C -0.298 4.298 4 C 0.041 3.959 5 N -0.184 5.184 6 C 0.030 3.970 7 C -0.250 4.250 8 C 0.369 3.631 9 O -0.416 6.416 10 N -0.328 5.328 11 C -0.029 4.029 12 C -0.155 4.155 13 C 0.209 3.791 14 O -0.395 6.395 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.534 5.534 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.020 4.020 24 C 0.139 3.861 25 C -0.195 4.195 26 N -0.082 5.082 27 N -0.136 5.136 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.180 0.820 32 H 0.202 0.798 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.745 4.648 -1.674 18.420 hybrid contribution 1.047 -0.932 0.248 1.424 sum -16.697 3.716 -1.427 17.165 Atomic orbital electron populations 1.20293 0.85408 1.03956 1.03611 1.22365 0.97392 0.90124 0.94416 1.20849 0.87422 1.00275 1.21217 1.20861 0.95039 0.80178 0.99835 1.68174 0.95961 1.36398 1.17903 1.23673 0.96500 0.90223 0.86599 1.20539 0.93677 0.95385 1.15387 1.16954 0.81862 0.83578 0.80679 1.90738 1.81302 1.29266 1.40296 1.48694 1.17051 1.27580 1.39470 1.22543 0.99587 0.88364 0.92426 1.22767 0.95351 1.01327 0.96066 1.19471 0.86074 0.85827 0.87710 1.86079 1.43964 1.37828 1.71655 1.21509 1.17144 1.22733 0.96267 0.91419 1.25077 0.96479 0.96373 0.95311 1.69569 1.30008 1.40958 1.12904 0.86379 0.78931 0.80728 0.80771 1.20397 1.20917 1.19656 1.23204 0.80364 0.96973 1.01495 1.20971 0.81087 0.96167 0.87905 1.21372 1.06784 0.85798 1.05552 1.47004 1.05943 1.07243 1.48047 1.77800 0.82400 1.21440 1.31947 0.89768 0.90347 0.89689 0.81975 0.79769 0.91957 0.90969 0.90143 0.90414 0.76061 0.91798 0.91163 0.91174 0.88576 0.89302 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.43 36.01 0.38 -0.13 16 2 C 0.12 1.36 7.16 -82.60 -0.59 0.77 16 3 C -0.27 -3.32 10.83 -39.19 -0.42 -3.75 16 4 C 0.27 3.96 7.91 -155.33 -1.23 2.73 16 5 N -0.47 -6.91 10.45 -11.91 -0.12 -7.03 16 6 C 0.21 2.97 9.30 -16.69 -0.16 2.81 16 7 C -0.24 -3.67 5.29 -104.88 -0.55 -4.23 16 8 C 0.58 10.49 7.03 -12.44 -0.09 10.40 16 9 O -0.54 -11.07 14.97 5.29 0.08 -10.99 16 10 N -0.60 -11.02 3.33 -171.70 -0.57 -11.59 16 11 C 0.09 1.48 5.33 -2.53 -0.01 1.47 16 12 C -0.12 -2.14 6.22 -24.58 -0.15 -2.29 16 13 C 0.25 5.60 0.86 -89.92 -0.08 5.53 16 14 O -0.58 -13.82 13.09 -35.23 -0.46 -14.28 16 15 C -0.54 -13.26 8.11 -34.44 -0.28 -13.54 16 16 H 0.07 1.65 7.76 -52.48 -0.41 1.24 16 17 C 0.07 1.76 5.28 -17.82 -0.09 1.66 16 18 N -0.90 -22.66 10.98 55.43 0.61 -22.05 16 19 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 C 0.10 2.22 5.54 -3.04 -0.02 2.21 16 24 C 0.26 3.85 6.92 -80.77 -0.56 3.29 16 25 C -0.14 -1.83 9.60 36.00 0.35 -1.48 16 26 N -0.31 -4.72 3.88 -7.99 -0.03 -4.75 16 27 N -0.31 -4.40 12.38 33.54 0.42 -3.99 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.19 2.16 6.35 -52.49 -0.33 1.82 16 33 H 0.06 0.85 6.91 -51.93 -0.36 0.49 16 34 H 0.07 1.06 7.41 -51.93 -0.38 0.67 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 37 H 0.39 9.51 6.99 45.56 0.32 9.83 16 38 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 39 H 0.07 1.68 7.81 -51.93 -0.41 1.27 16 40 H 0.07 1.70 8.07 -51.93 -0.42 1.28 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.08 7.98 -51.93 -0.41 0.66 16 43 H 0.12 1.83 5.63 -51.93 -0.29 1.54 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -29.05 355.78 -8.04 -37.09 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -4.79 Total: 12.20 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -3.51 Total: 5.43 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.30 Total: -49.42 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.38 Total: -25.27 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.05 -8.04 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.148 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds