Wall clock time and date at job start Tue Mar 31 2020 04:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38838 * 125.50911 * 2 1 4 4 C 1.38707 * 107.68056 * 179.97438 * 3 2 1 5 5 N 1.34156 * 132.25258 * 179.97438 * 4 3 2 6 6 C 1.30899 * 121.16474 * 179.71771 * 5 4 3 7 7 C 1.41544 * 120.07158 * 0.59213 * 6 5 4 8 8 C 1.47598 * 120.50229 * 179.69292 * 7 6 5 9 9 O 1.21590 * 120.00058 * 141.45149 * 8 7 6 10 10 N 1.34778 * 120.00239 * 321.45666 * 8 7 6 11 11 C 1.47427 * 125.64863 * 5.07099 * 10 8 7 12 12 C 1.55389 * 104.87348 * 204.17196 * 11 10 8 13 13 C 1.55162 * 101.36271 * 323.01337 * 12 11 10 14 14 O 1.42898 * 110.72003 * 277.04246 * 13 12 11 15 15 C 1.50697 * 110.71652 * 153.95108 * 13 12 11 16 16 H 1.08004 * 120.00218 * 1.31927 * 15 13 12 17 17 C 1.37871 * 119.99972 * 181.32096 * 15 13 12 18 18 N 1.31520 * 120.00291 * 4.72544 * 17 15 13 19 19 Si 1.86805 * 120.00171 * 184.72955 * 17 15 13 20 20 H 1.48493 * 109.47473 * 84.97851 * 19 17 15 21 21 H 1.48503 * 109.47082 * 204.98268 * 19 17 15 22 22 H 1.48501 * 109.46822 * 324.97502 * 19 17 15 23 23 C 1.47019 * 125.65036 * 185.11397 * 10 8 7 24 24 C 1.38062 * 118.99308 * 359.42413 * 7 6 5 25 25 C 1.50704 * 120.55494 * 180.25210 * 24 7 6 26 26 N 1.36076 * 118.89280 * 0.27540 * 24 7 6 27 27 N 1.31295 * 125.50350 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47018 * 89.99980 * 1 2 3 29 29 H 1.08997 * 109.47218 * 210.00282 * 1 2 3 30 30 H 1.09002 * 109.46910 * 330.00200 * 1 2 3 31 31 H 1.08005 * 126.16021 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.96205 * 180.28483 * 6 5 4 33 33 H 1.09000 * 110.36451 * 323.00380 * 11 10 8 34 34 H 1.08995 * 110.36777 * 85.21554 * 11 10 8 35 35 H 1.09005 * 111.18476 * 204.97842 * 12 11 10 36 36 H 1.08993 * 111.02397 * 80.97736 * 12 11 10 37 37 H 0.96701 * 113.99734 * 171.40871 * 14 13 12 38 38 H 0.96995 * 119.99848 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.88252 * 59.48507 * 23 10 8 40 40 H 1.09005 * 109.88233 * 298.32289 * 23 10 8 41 41 H 1.09008 * 109.46660 * 84.35170 * 25 24 7 42 42 H 1.08999 * 109.47449 * 204.34890 * 25 24 7 43 43 H 1.09000 * 109.47590 * 324.35783 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3134 1.1302 0.0000 4 6 3.6339 0.7055 0.0006 5 7 4.7967 1.3746 0.0004 6 6 5.9425 0.7417 0.0066 7 6 5.9710 -0.6734 0.0010 8 6 7.2576 -1.3968 0.0011 9 8 7.3825 -2.4152 0.6536 10 7 8.2942 -0.9284 -0.7219 11 6 8.3159 0.3421 -1.4694 12 6 9.3875 0.1358 -2.5756 13 6 10.4470 -0.7099 -1.8208 14 8 11.3119 0.1303 -1.0540 15 6 11.2423 -1.5520 -2.7849 16 1 11.0456 -1.4905 -3.8451 17 6 12.2211 -2.4009 -2.3135 18 7 12.3981 -2.5458 -1.0184 19 14 13.2960 -3.3454 -3.5144 20 1 14.4369 -2.4927 -3.9340 21 1 13.8112 -4.5735 -2.8574 22 1 12.4941 -3.7212 -4.7065 23 6 9.5902 -1.6003 -0.8965 24 6 4.7772 -1.3669 0.0012 25 6 4.7666 -2.8739 0.0010 26 7 3.6103 -0.6669 0.0009 27 7 2.2695 -1.0688 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9738 2.1554 0.0004 32 1 6.8670 1.2999 0.0110 33 1 7.3412 0.5353 -1.9174 34 1 8.6002 1.1640 -0.8124 35 1 9.8068 1.0881 -2.9004 36 1 8.9762 -0.4167 -3.4203 37 1 11.9060 -0.3519 -0.4628 38 1 13.0870 -3.1427 -0.6868 39 1 9.4422 -2.5775 -1.3561 40 1 10.0822 -1.7134 0.0696 41 1 4.8653 -3.2380 1.0238 42 1 3.8278 -3.2306 -0.4225 43 1 5.5990 -3.2431 -0.5979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:21 Heat of formation + Delta-G solvation = 36.244633 kcal Electronic energy + Delta-G solvation = -28343.867408 eV Core-core repulsion = 24391.326978 eV Total energy + Delta-G solvation = -3952.540430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54296 -39.92523 -38.13127 -37.28664 -35.10468 -34.40915 -32.55128 -32.29196 -30.44847 -29.81372 -28.82916 -28.47523 -27.74138 -25.26587 -24.18241 -22.99849 -22.40926 -20.71318 -19.79574 -19.26520 -18.49445 -17.39784 -17.23776 -16.54792 -16.27412 -15.63840 -15.40698 -14.99143 -14.67179 -14.48202 -14.07804 -13.93790 -13.53744 -13.36706 -13.27519 -13.14944 -13.01151 -12.92432 -12.76839 -12.45480 -12.43179 -12.17859 -11.72030 -11.55614 -11.35456 -11.11122 -10.91464 -10.80511 -10.75672 -10.53276 -10.27878 -10.22581 -9.63602 -9.48463 -9.43089 -8.75468 -8.41366 -8.19162 -7.97551 -6.35768 -4.43817 0.29262 0.52703 1.70910 2.26443 2.87631 3.16864 3.24594 3.25932 3.27944 3.42230 3.65530 3.83237 4.06611 4.21694 4.51940 4.67710 4.78698 4.91513 5.08200 5.12437 5.18945 5.24782 5.29173 5.34099 5.38140 5.44103 5.54564 5.66701 5.67942 5.82395 5.85241 5.92137 5.99835 6.18659 6.35358 6.37052 6.63095 6.70801 6.75424 7.11661 7.22499 7.24220 7.43248 7.65936 7.89392 7.96834 8.39506 8.59288 9.21024 9.29578 10.72166 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.025927 B = 0.002870 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.687971 B = 9753.797470 C =10176.642699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.117 3.883 3 C -0.267 4.267 4 C 0.267 3.733 5 N -0.474 5.474 6 C 0.211 3.789 7 C -0.241 4.241 8 C 0.581 3.419 9 O -0.535 6.535 10 N -0.600 5.600 11 C 0.091 3.909 12 C -0.116 4.116 13 C 0.249 3.751 14 O -0.582 6.582 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.072 3.928 18 N -0.893 5.893 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.103 3.897 24 C 0.257 3.743 25 C -0.117 4.117 26 N -0.313 5.313 27 N -0.311 5.311 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.187 0.813 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.382 0.618 38 H 0.271 0.729 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 5.286 1.383 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 C -0.297 4.297 4 C 0.041 3.959 5 N -0.185 5.185 6 C 0.027 3.973 7 C -0.251 4.251 8 C 0.367 3.633 9 O -0.414 6.414 10 N -0.332 5.332 11 C -0.032 4.032 12 C -0.154 4.154 13 C 0.208 3.792 14 O -0.391 6.391 15 C -0.576 4.576 16 H 0.085 0.915 17 C -0.131 4.131 18 N -0.532 5.532 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.018 4.018 24 C 0.139 3.861 25 C -0.174 4.174 26 N -0.083 5.083 27 N -0.136 5.136 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.180 0.820 32 H 0.204 0.796 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.900 4.722 1.575 18.579 hybrid contribution 1.109 -0.854 -0.235 1.419 sum -16.791 3.868 1.340 17.283 Atomic orbital electron populations 1.20293 0.85402 1.03945 1.03632 1.22366 0.97394 0.90122 0.94402 1.20852 0.87419 1.00279 1.21189 1.20873 0.95058 0.80167 0.99800 1.68189 0.95961 1.36395 1.17939 1.23822 0.96582 0.90372 0.86529 1.20578 0.93698 0.95342 1.15435 1.16956 0.81796 0.84316 0.80223 1.90801 1.83024 1.25144 1.42426 1.48683 1.14976 1.22247 1.47245 1.22685 0.99572 0.86368 0.94544 1.22846 0.94868 1.01416 0.96286 1.19504 0.86315 0.86018 0.87345 1.86122 1.54546 1.38449 1.60003 1.21469 1.19016 1.23403 0.93754 0.91505 1.25056 0.96806 0.95743 0.95519 1.69688 1.33362 1.38013 1.12116 0.86422 0.80582 0.79055 0.80878 1.20254 1.21062 1.19790 1.23190 0.79829 0.97321 1.01436 1.20991 0.81113 0.96219 0.87806 1.21100 1.04917 0.85562 1.05776 1.46987 1.05927 1.07242 1.48128 1.77800 0.82387 1.21435 1.31944 0.89740 0.90351 0.89700 0.81968 0.79594 0.91843 0.90942 0.90104 0.90330 0.76738 0.91930 0.91045 0.91104 0.87671 0.89659 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.43 36.01 0.38 -0.13 16 2 C 0.12 1.35 7.16 -82.60 -0.59 0.76 16 3 C -0.27 -3.31 10.83 -39.19 -0.42 -3.73 16 4 C 0.27 3.95 7.91 -155.32 -1.23 2.72 16 5 N -0.47 -6.91 10.45 -11.91 -0.12 -7.03 16 6 C 0.21 2.92 9.17 -16.69 -0.15 2.77 16 7 C -0.24 -3.69 5.46 -104.88 -0.57 -4.26 16 8 C 0.58 10.45 6.92 -12.44 -0.09 10.37 16 9 O -0.54 -11.04 15.40 5.29 0.08 -10.96 16 10 N -0.60 -11.06 3.33 -171.42 -0.57 -11.63 16 11 C 0.09 1.43 5.20 -2.27 -0.01 1.42 16 12 C -0.12 -2.11 6.26 -24.32 -0.15 -2.26 16 13 C 0.25 5.56 0.84 -89.94 -0.08 5.48 16 14 O -0.58 -13.60 13.06 -35.23 -0.46 -14.06 16 15 C -0.54 -13.32 8.10 -34.44 -0.28 -13.60 16 16 H 0.07 1.63 7.77 -52.48 -0.41 1.23 16 17 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 18 N -0.89 -22.72 11.03 55.43 0.61 -22.10 16 19 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 23 C 0.10 2.28 5.33 -3.07 -0.02 2.26 16 24 C 0.26 3.84 6.92 -80.77 -0.56 3.28 16 25 C -0.12 -1.54 8.79 36.01 0.32 -1.23 16 26 N -0.31 -4.71 3.88 -7.99 -0.03 -4.74 16 27 N -0.31 -4.38 12.38 33.54 0.42 -3.96 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.16 1.61 8.06 -52.48 -0.42 1.18 16 32 H 0.19 2.19 5.73 -52.49 -0.30 1.89 16 33 H 0.06 0.85 6.64 -51.93 -0.34 0.51 16 34 H 0.07 1.05 7.30 -51.93 -0.38 0.67 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 37 H 0.38 9.18 7.36 45.56 0.34 9.52 16 38 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.07 1.72 7.82 -51.93 -0.41 1.31 16 40 H 0.07 1.71 7.90 -51.93 -0.41 1.30 16 41 H 0.11 1.36 8.14 -51.92 -0.42 0.93 16 42 H 0.08 1.01 7.99 -51.93 -0.41 0.60 16 43 H 0.10 1.43 6.85 -51.93 -0.36 1.08 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -29.24 355.46 -8.07 -37.30 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -4.77 Total: 11.53 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -3.55 Total: 5.57 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.30 Total: -49.48 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.38 Total: -25.02 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.24 -8.07 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.549 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds