Wall clock time and date at job start Tue Mar 31 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39910 * 125.76083 * 2 1 4 4 C 1.30355 * 109.15108 * 179.97438 * 3 2 1 5 5 C 1.41373 * 108.15914 * 359.97438 * 4 3 2 6 6 C 1.47012 * 126.48267 * 179.97438 * 5 4 3 7 7 O 1.21660 * 120.00092 * 180.02562 * 6 5 4 8 8 N 1.34784 * 120.00062 * 0.03587 * 6 5 4 9 9 C 1.47014 * 125.64965 * 359.96834 * 8 6 5 10 10 C 1.54327 * 107.27187 * 178.98958 * 9 8 6 11 11 C 1.55149 * 102.94214 * 337.80814 * 10 9 8 12 12 O 1.42903 * 111.00594 * 277.43081 * 11 10 9 13 13 C 1.50694 * 111.00456 * 153.61700 * 11 10 9 14 14 H 1.07991 * 120.00193 * 3.17397 * 13 11 10 15 15 C 1.37884 * 119.99946 * 183.18304 * 13 11 10 16 16 N 1.31508 * 119.99961 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00010 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47028 * 89.99282 * 17 15 13 19 19 H 1.48497 * 109.47433 * 209.99661 * 17 15 13 20 20 H 1.48500 * 109.47121 * 329.99953 * 17 15 13 21 21 C 1.47419 * 125.64596 * 180.02562 * 8 6 5 22 22 C 1.34741 * 125.75798 * 180.27476 * 2 1 3 23 23 N 1.38989 * 126.41348 * 0.02888 * 22 2 1 24 24 C 1.36725 * 125.69408 * 134.88555 * 23 22 2 25 25 C 1.34786 * 108.18786 * 179.83366 * 24 23 22 26 26 C 1.41021 * 107.50465 * 0.42585 * 25 24 23 27 27 C 1.34788 * 107.50023 * 359.73492 * 26 25 24 28 28 H 1.09000 * 109.46806 * 90.02157 * 1 2 3 29 29 H 1.09001 * 109.47397 * 210.02772 * 1 2 3 30 30 H 1.09008 * 109.47028 * 330.02838 * 1 2 3 31 31 H 1.07992 * 125.91904 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.88292 * 59.56755 * 9 8 6 33 33 H 1.09001 * 109.88362 * 298.40947 * 9 8 6 34 34 H 1.09002 * 110.71297 * 219.44414 * 10 9 8 35 35 H 1.09000 * 110.86709 * 96.24207 * 10 9 8 36 36 H 0.96700 * 114.00311 * 180.02562 * 12 11 10 37 37 H 0.97001 * 119.99988 * 180.02562 * 16 15 13 38 38 H 1.09009 * 110.36844 * 85.24321 * 21 8 6 39 39 H 1.09002 * 110.37005 * 322.91821 * 21 8 6 40 40 H 1.08000 * 125.90693 * 0.02562 * 24 23 22 41 41 H 1.08002 * 126.24800 * 180.15585 * 25 24 23 42 42 H 1.07999 * 126.24943 * 179.69460 * 26 25 24 43 43 H 1.08000 * 125.90446 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1353 0.0000 4 6 3.5318 0.7627 0.0006 5 6 3.5700 -0.6505 0.0015 6 6 4.7752 -1.4923 0.0019 7 8 4.6706 -2.7044 0.0023 8 7 5.9961 -0.9213 0.0019 9 6 6.2662 0.5238 0.0010 10 6 7.7987 0.7036 0.0275 11 6 8.2966 -0.6442 0.6128 12 8 8.2181 -0.6432 2.0397 13 6 9.6989 -0.9479 0.1522 14 1 10.2330 -0.2352 -0.4586 15 6 10.3001 -2.1360 0.5104 16 7 9.6499 -3.0038 1.2544 17 14 12.0381 -2.5129 -0.0612 18 1 13.0097 -2.0061 0.9411 19 1 12.2024 -3.9811 -0.2116 20 1 12.2840 -1.8509 -1.3675 21 6 7.2819 -1.6425 0.0017 22 6 2.2524 -1.0934 -0.0052 23 7 1.8268 -2.4165 -0.0122 24 6 2.3289 -3.4118 -0.8038 25 6 1.6653 -4.5502 -0.5199 26 6 0.7124 -4.2489 0.4750 27 6 0.8321 -2.9386 0.7674 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3633 0.8903 0.5134 31 1 4.3889 1.4197 0.0011 32 1 5.8235 0.9842 0.8844 33 1 5.8552 0.9772 -0.9010 34 1 8.0784 1.5331 0.6771 35 1 8.1893 0.8549 -0.9788 36 1 8.5192 -1.4650 2.4508 37 1 10.0729 -3.8394 1.5068 38 1 7.5713 -1.9018 -1.0167 39 1 7.2140 -2.5392 0.6177 40 1 3.1223 -3.3051 -1.5287 41 1 1.8301 -5.5158 -0.9749 42 1 0.0138 -4.9415 0.9208 43 1 0.2438 -2.3950 1.4918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:36 Heat of formation + Delta-G solvation = 74.970158 kcal Electronic energy + Delta-G solvation = -28818.519511 eV Core-core repulsion = 24867.658346 eV Total energy + Delta-G solvation = -3950.861165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.18454 -40.53554 -39.09926 -37.05562 -34.47395 -33.72917 -32.71870 -32.18874 -30.28134 -28.97820 -28.79691 -28.18809 -27.06269 -25.08071 -23.50946 -22.26710 -21.61152 -20.38978 -20.19873 -19.59862 -19.10798 -17.67312 -17.24435 -16.74547 -16.11054 -15.51984 -15.14912 -14.93453 -14.73280 -14.45038 -14.23757 -14.18541 -13.91182 -13.37768 -13.21485 -13.08962 -12.99273 -12.80242 -12.64599 -12.28993 -12.04897 -12.01760 -11.60096 -11.37690 -11.18248 -11.04293 -10.75643 -10.61664 -10.48897 -10.19345 -10.02432 -9.45585 -9.33319 -9.12676 -8.69578 -8.42404 -8.36086 -8.13251 -7.74204 -6.28961 -4.39166 1.00671 1.74742 2.09999 2.38224 2.90491 3.08848 3.20263 3.28384 3.30434 3.58777 3.76541 4.19787 4.27087 4.71231 4.75532 4.79478 4.94810 4.99723 5.04628 5.16224 5.24445 5.35858 5.37259 5.54961 5.59728 5.62726 5.77387 5.97701 6.10542 6.23197 6.26166 6.26827 6.31814 6.48625 6.71676 6.84880 6.90418 7.00572 7.07616 7.26429 7.33261 7.36357 7.40428 7.73654 7.98907 8.23280 8.64326 8.77902 9.30427 9.41434 10.77919 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.003531 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.549561 B = 7928.172271 C = 9103.378314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.367 5.367 3 N -0.280 5.280 4 C 0.083 3.917 5 C -0.268 4.268 6 C 0.594 3.406 7 O -0.547 6.547 8 N -0.600 5.600 9 C 0.096 3.904 10 C -0.119 4.119 11 C 0.249 3.751 12 O -0.584 6.584 13 C -0.539 4.539 14 H 0.067 0.933 15 C 0.071 3.929 16 N -0.893 5.893 17 Si 0.903 3.097 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.098 3.902 22 C 0.350 3.650 23 N -0.389 5.389 24 C 0.068 3.932 25 C -0.208 4.208 26 C -0.170 4.170 27 C -0.040 4.040 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.210 0.790 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.384 0.616 37 H 0.271 0.729 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.169 0.831 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 4.444 -3.258 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.150 5.150 3 N -0.101 5.101 4 C -0.104 4.104 5 C -0.285 4.285 6 C 0.383 3.617 7 O -0.426 6.426 8 N -0.331 5.331 9 C -0.027 4.027 10 C -0.157 4.157 11 C 0.208 3.792 12 O -0.393 6.393 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.531 5.531 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.023 4.023 22 C 0.127 3.873 23 N -0.067 5.067 24 C -0.059 4.059 25 C -0.232 4.232 26 C -0.195 4.195 27 C -0.164 4.164 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.226 0.774 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.235 0.765 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.186 0.814 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.584 5.492 -3.267 19.652 hybrid contribution 1.613 -1.461 -0.059 2.178 sum -16.971 4.030 -3.326 17.757 Atomic orbital electron populations 1.22118 0.73554 1.05150 1.04210 1.48590 1.07125 1.02502 1.56745 1.77265 1.02081 1.05053 1.25672 1.24762 0.95510 0.93982 0.96121 1.20082 0.91740 0.94152 1.22481 1.16605 0.81186 0.86574 0.77372 1.90797 1.85966 1.13460 1.52423 1.48449 1.05984 1.07782 1.70930 1.22307 0.98499 0.82308 0.99574 1.22655 0.91684 0.99953 1.01403 1.19603 0.91899 0.88279 0.79427 1.86075 1.88871 1.43719 1.20653 1.21480 0.98937 1.03633 1.33729 0.91461 1.25083 0.98480 0.95539 0.94099 1.69651 1.37640 1.09614 1.36239 0.86408 0.83757 0.77553 0.79221 1.20396 1.20997 1.19684 1.23263 0.79803 0.98067 1.01137 1.17842 0.89468 0.80225 0.99758 1.40543 1.30317 1.03319 1.32561 1.22032 0.99814 0.86071 0.97942 1.20941 1.00914 0.97922 1.03404 1.20944 1.02597 0.94395 1.01589 1.21802 0.96938 0.95634 1.02048 0.90087 0.89083 0.88351 0.77414 0.91772 0.92278 0.90582 0.90274 0.76456 0.91900 0.92103 0.89654 0.81420 0.83944 0.84138 0.82319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 11.30 59.85 0.68 1.40 16 2 N -0.37 -4.74 3.99 -66.65 -0.27 -5.00 16 3 N -0.28 -3.90 12.48 30.86 0.39 -3.52 16 4 C 0.08 1.19 10.44 -16.99 -0.18 1.01 16 5 C -0.27 -4.56 6.09 -104.86 -0.64 -5.20 16 6 C 0.59 12.10 7.81 -12.70 -0.10 12.00 16 7 O -0.55 -12.54 13.60 5.22 0.07 -12.47 16 8 N -0.60 -12.19 3.33 -171.94 -0.57 -12.77 16 9 C 0.10 1.61 4.98 -3.07 -0.02 1.60 16 10 C -0.12 -2.25 6.13 -24.90 -0.15 -2.40 16 11 C 0.25 5.87 0.89 -89.63 -0.08 5.79 16 12 O -0.58 -14.73 13.19 -35.23 -0.46 -15.20 16 13 C -0.54 -13.72 8.26 -34.44 -0.28 -14.00 16 14 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 15 C 0.07 1.83 5.27 -17.82 -0.09 1.73 16 16 N -0.89 -23.58 10.68 55.43 0.59 -22.99 16 17 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.10 2.32 5.51 -2.53 -0.01 2.31 16 22 C 0.35 5.40 7.11 -153.04 -1.09 4.31 16 23 N -0.39 -5.85 2.79 -62.23 -0.17 -6.02 16 24 C 0.07 1.07 8.95 -16.59 -0.15 0.92 16 25 C -0.21 -2.89 10.86 -39.75 -0.43 -3.33 16 26 C -0.17 -2.11 10.86 -39.75 -0.43 -2.54 16 27 C -0.04 -0.51 9.93 -16.59 -0.16 -0.67 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.61 5.41 -51.93 -0.28 0.33 16 30 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.21 2.52 4.47 -52.49 -0.23 2.29 16 32 H 0.06 1.00 6.83 -51.93 -0.35 0.65 16 33 H 0.06 0.81 6.99 -51.93 -0.36 0.44 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.40 8.02 -51.93 -0.42 0.98 16 36 H 0.38 10.10 7.18 45.56 0.33 10.43 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.06 1.47 8.03 -51.92 -0.42 1.05 16 39 H 0.09 2.29 7.48 -51.93 -0.39 1.90 16 40 H 0.17 2.77 7.14 -52.49 -0.37 2.39 16 41 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.16 1.52 6.91 -52.49 -0.36 1.16 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -31.24 350.37 -7.83 -39.07 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -4.52 Total: 15.64 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -3.14 Total: 2.93 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.03 Total: -50.30 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.39 Total: -27.67 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.24 -7.83 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.042 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds