Wall clock time and date at job start Tue Mar 31 2020 04:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99571 * 2 1 4 4 H 1.48506 * 109.46942 * 269.99687 * 3 2 1 5 5 H 1.48497 * 109.47329 * 29.99489 * 3 2 1 6 6 H 1.48497 * 109.46858 * 150.00117 * 3 2 1 7 7 C 1.37870 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00624 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99696 * 0.28051 * 7 2 1 10 10 H 1.09006 * 109.50168 * 299.72071 * 9 7 2 11 11 C 1.53117 * 109.50615 * 59.80139 * 9 7 2 12 12 C 1.53116 * 109.16167 * 177.59887 * 11 9 7 13 13 C 1.53038 * 109.27630 * 302.34334 * 12 11 9 14 14 N 1.46851 * 109.52473 * 59.18126 * 13 12 11 15 15 C 1.46900 * 110.99929 * 174.16450 * 14 13 12 16 16 H 1.09000 * 110.53558 * 178.25680 * 15 14 13 17 17 C 1.54228 * 110.60484 * 301.09433 * 15 14 13 18 18 C 1.51683 * 103.38051 * 118.48307 * 17 15 14 19 19 O 1.21218 * 125.36036 * 180.02562 * 18 17 15 20 20 N 1.33877 * 109.24066 * 0.12447 * 18 17 15 21 21 C 1.39770 * 122.76243 * 179.91637 * 20 18 17 22 22 C 1.39131 * 120.07478 * 192.55790 * 21 20 18 23 23 N 1.31990 * 119.91015 * 179.78059 * 22 21 20 24 24 C 1.32225 * 120.06617 * 0.50051 * 23 22 21 25 25 C 1.38246 * 120.15130 * 359.73446 * 24 23 22 26 26 N 1.32183 * 120.08840 * 0.02562 * 25 24 23 27 27 C 1.33878 * 114.47506 * 359.91709 * 20 18 17 28 28 O 1.21214 * 125.39763 * 179.97438 * 27 20 18 29 29 C 1.46851 * 111.22716 * 298.27893 * 14 13 12 30 30 H 0.97001 * 120.00609 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.51822 * 297.49763 * 11 9 7 32 32 H 1.09001 * 109.52205 * 57.62446 * 11 9 7 33 33 H 1.08999 * 109.50841 * 62.28008 * 12 11 9 34 34 H 1.09004 * 109.50552 * 182.36735 * 12 11 9 35 35 H 1.08995 * 109.46538 * 179.19945 * 13 12 11 36 36 H 1.09006 * 109.46256 * 299.17653 * 13 12 11 37 37 H 1.08991 * 110.61234 * 237.03867 * 17 15 14 38 38 H 1.09007 * 110.60467 * 0.02562 * 17 15 14 39 39 H 1.08005 * 120.04841 * 0.02607 * 22 21 20 40 40 H 1.07999 * 119.92497 * 179.71508 * 24 23 22 41 41 H 1.07999 * 119.95732 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.42662 * 301.68261 * 29 14 13 43 43 H 1.09007 * 109.48968 * 181.71967 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 -0.0053 10 1 0.6242 -2.5613 0.8843 11 6 0.3720 -2.5764 -1.2566 12 6 -0.3436 -3.9297 -1.2852 13 6 0.6965 -5.0519 -1.2562 14 7 1.5113 -4.9346 -0.0401 15 6 2.4287 -6.0744 0.0909 16 1 3.0509 -5.9643 0.9790 17 6 1.6430 -7.4007 0.1396 18 6 2.1408 -8.1487 -1.0824 19 8 1.7759 -9.2523 -1.4263 20 7 3.0481 -7.3983 -1.7197 21 6 3.6924 -7.8189 -2.8866 22 6 4.8026 -7.1257 -3.3586 23 7 5.4112 -7.5284 -4.4584 24 6 4.9609 -8.5831 -5.1165 25 6 3.8551 -9.2710 -4.6525 26 7 3.2438 -8.8759 -3.5492 27 6 3.2874 -6.2120 -1.1474 28 8 4.0686 -5.3801 -1.5560 29 6 2.2449 -3.6627 -0.0124 30 1 -0.4851 0.8400 -0.0004 31 1 -0.3660 -1.7745 -1.2333 32 1 0.9941 -2.4733 -2.1457 33 1 -0.9955 -4.0152 -0.4158 34 1 -0.9385 -4.0076 -2.1953 35 1 0.1898 -6.0170 -1.2621 36 1 1.3395 -4.9740 -2.1329 37 1 1.8765 -7.9517 1.0506 38 1 0.5715 -7.2147 0.0663 39 1 5.1683 -6.2617 -2.8236 40 1 5.4578 -8.9078 -6.0187 41 1 3.4902 -10.1323 -5.1923 42 1 2.8810 -3.5918 -0.8946 43 1 2.8624 -3.6186 0.8849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594661133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:52 Heat of formation + Delta-G solvation = 15.956336 kcal Electronic energy + Delta-G solvation = -29027.716497 eV Core-core repulsion = 25074.296301 eV Total energy + Delta-G solvation = -3953.420196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86940 -40.94011 -39.08779 -38.07941 -36.21157 -34.91954 -34.16909 -32.66912 -31.31264 -30.20784 -29.47543 -26.13865 -25.34487 -25.01660 -24.78896 -23.03359 -22.05078 -21.17533 -20.50377 -18.79936 -18.27154 -17.77714 -17.48000 -17.25001 -16.38479 -16.12516 -15.86497 -15.35420 -14.94504 -14.76589 -14.60809 -14.52040 -14.39860 -13.92105 -13.61466 -13.39119 -12.90260 -12.76012 -12.61601 -12.27665 -11.91402 -11.87898 -11.84242 -11.59014 -11.06334 -10.96963 -10.96399 -10.76853 -10.69544 -10.47714 -10.21160 -9.92979 -9.58461 -9.38228 -9.20746 -9.12547 -8.80712 -8.37478 -8.07892 -6.01668 -4.07616 0.33463 0.77236 1.25592 1.87131 2.44239 3.30059 3.37022 3.39998 3.42424 3.64747 3.74526 3.94882 3.98864 4.07896 4.15454 4.27742 4.45019 4.68130 4.79825 4.86437 5.10644 5.25556 5.30507 5.34344 5.38437 5.46858 5.53171 5.82547 6.01043 6.03747 6.26344 6.28368 6.34894 6.51038 6.61444 6.79279 6.92240 6.97835 7.04403 7.15193 7.31202 7.41491 7.46824 7.51992 7.71857 7.98125 8.09345 8.40975 8.95882 9.57234 11.04434 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.003455 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.661017 B = 8102.344949 C = 8918.461386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.057 3.943 10 H 0.037 0.963 11 C -0.114 4.114 12 C -0.114 4.114 13 C 0.047 3.953 14 N -0.499 5.499 15 C 0.061 3.939 16 H 0.141 0.859 17 C -0.149 4.149 18 C 0.521 3.479 19 O -0.441 6.441 20 N -0.512 5.512 21 C 0.279 3.721 22 C 0.049 3.951 23 N -0.417 5.417 24 C 0.030 3.970 25 C 0.076 3.924 26 N -0.433 5.433 27 C 0.496 3.504 28 O -0.451 6.451 29 C 0.055 3.945 30 H 0.260 0.740 31 H 0.094 0.906 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.197 0.803 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.043 0.957 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.840 -18.136 -3.964 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.038 3.962 10 H 0.055 0.945 11 C -0.152 4.152 12 C -0.152 4.152 13 C -0.081 4.081 14 N -0.223 5.223 15 C -0.052 4.052 16 H 0.159 0.841 17 C -0.189 4.189 18 C 0.310 3.690 19 O -0.308 6.308 20 N -0.253 5.253 21 C 0.050 3.950 22 C -0.113 4.113 23 N -0.131 5.131 24 C -0.130 4.130 25 C -0.085 4.085 26 N -0.152 5.152 27 C 0.284 3.716 28 O -0.319 6.319 29 C -0.071 4.071 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.213 0.787 40 H 0.192 0.808 41 H 0.194 0.806 42 H 0.062 0.938 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.566 -18.128 -3.917 19.100 hybrid contribution 1.001 0.788 -1.026 1.636 sum 5.568 -17.340 -4.943 18.871 Atomic orbital electron populations 1.69873 1.05840 1.26427 1.50600 1.24914 0.94830 0.98987 0.95017 0.86617 0.79923 0.83520 0.78082 1.20783 1.21254 1.19872 1.21112 0.92951 0.90428 1.50822 0.92635 1.18673 0.92440 0.90189 0.94859 0.94506 1.21707 1.00211 0.94602 0.98684 1.21656 0.96795 0.95971 1.00777 1.22308 0.96238 0.99865 0.89681 1.62562 1.20558 1.01635 1.37511 1.22852 0.93210 0.93689 0.95448 0.84140 1.22804 1.04694 0.94346 0.97044 1.21250 0.77409 0.85301 0.85078 1.90799 1.54851 1.17230 1.67894 1.44851 1.38509 1.19797 1.22170 1.19696 0.92425 0.93861 0.89046 1.24368 0.91717 1.01036 0.94228 1.68606 1.27706 1.11716 1.05061 1.23853 0.95882 0.92578 1.00683 1.23705 0.93190 0.99921 0.91717 1.68057 1.28882 1.11650 1.06620 1.22872 0.82560 0.78881 0.87336 1.90681 1.33193 1.41747 1.66240 1.22622 0.96913 0.86864 1.00710 0.93011 0.88722 0.95044 0.91485 0.93119 0.91870 0.95686 0.85181 0.84565 0.78695 0.80775 0.80570 0.93823 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 11.35 55.43 0.63 -23.94 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.61 8.57 -34.44 -0.30 -13.90 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.06 1.34 2.26 -91.69 -0.21 1.13 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.57 5.02 -26.61 -0.13 -2.70 16 12 C -0.11 -2.06 6.09 -26.65 -0.16 -2.22 16 13 C 0.05 0.74 4.74 -3.83 -0.02 0.72 16 14 N -0.50 -7.76 4.65 -226.93 -1.05 -8.82 16 15 C 0.06 0.73 3.20 -67.92 -0.22 0.51 16 16 H 0.14 1.36 8.10 -51.93 -0.42 0.94 16 17 C -0.15 -1.41 6.12 -26.76 -0.16 -1.57 16 18 C 0.52 6.60 8.02 -10.90 -0.09 6.51 16 19 O -0.44 -6.69 16.45 5.61 0.09 -6.60 16 20 N -0.51 -6.93 2.77 -60.91 -0.17 -7.10 16 21 C 0.28 3.97 7.31 -154.12 -1.13 2.84 16 22 C 0.05 0.68 10.35 -17.15 -0.18 0.51 16 23 N -0.42 -5.31 10.49 -12.91 -0.14 -5.45 16 24 C 0.03 0.28 11.21 -17.38 -0.19 0.09 16 25 C 0.08 0.75 11.22 -17.40 -0.20 0.55 16 26 N -0.43 -5.94 8.83 -12.11 -0.11 -6.05 16 27 C 0.50 6.90 5.78 -11.09 -0.06 6.83 16 28 O -0.45 -7.37 12.92 5.61 0.07 -7.30 16 29 C 0.05 1.06 4.33 -3.83 -0.02 1.04 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.09 2.40 6.14 -51.93 -0.32 2.09 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.85 6.14 -51.93 -0.32 0.53 16 36 H 0.02 0.44 7.26 -51.93 -0.38 0.06 16 37 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.14 1.26 6.43 -51.93 -0.33 0.93 16 39 H 0.20 2.82 5.32 -52.48 -0.28 2.54 16 40 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.04 0.91 6.39 -51.93 -0.33 0.58 16 43 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -32.01 344.62 -8.96 -40.96 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.30 Total: 1.23 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.16 Total: 1.97 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.84 Total: -51.35 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.16 Total: -13.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.01 -8.96 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594661133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.920 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds