Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99508 * 2 1 4 4 H 1.48500 * 109.47125 * 239.99473 * 3 2 1 5 5 H 1.48494 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46690 * 120.00359 * 3 2 1 7 7 C 1.37871 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00129 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47382 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47254 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47283 * 180.02562 * 11 10 9 13 13 C 1.46902 * 111.00251 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.46456 * 325.00069 * 13 12 11 15 15 C 1.50696 * 109.46978 * 85.00089 * 13 12 11 16 16 N 1.34777 * 120.00076 * 180.02562 * 15 13 12 17 17 O 1.21281 * 120.00074 * 359.97438 * 15 13 12 18 18 C 1.50697 * 109.47008 * 204.99923 * 13 12 11 19 19 C 1.38310 * 119.88408 * 319.72369 * 18 13 12 20 20 C 1.38040 * 120.11450 * 179.76350 * 19 18 13 21 21 C 1.39293 * 119.88197 * 0.49149 * 20 19 18 22 22 C 1.48465 * 120.11825 * 179.78756 * 21 20 19 23 23 N 1.34046 * 126.67638 * 179.97438 * 22 21 20 24 24 N 1.28983 * 107.27056 * 179.97438 * 23 22 21 25 25 N 1.28730 * 108.94376 * 0.02562 * 24 23 22 26 26 H 0.97002 * 125.34295 * 179.97438 * 25 24 23 27 27 N 1.28878 * 109.31443 * 359.74523 * 25 24 23 28 28 C 1.39302 * 119.76750 * 359.76258 * 21 20 19 29 29 C 1.38029 * 119.87958 * 0.02562 * 28 21 20 30 30 H 0.97002 * 120.00739 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.46475 * 60.00417 * 9 7 2 32 32 H 1.08996 * 109.47140 * 300.00611 * 9 7 2 33 33 H 1.09005 * 109.46781 * 60.00203 * 10 9 7 34 34 H 1.09002 * 109.47164 * 300.00727 * 10 9 7 35 35 H 1.09005 * 109.47052 * 60.00380 * 11 10 9 36 36 H 1.08991 * 109.47304 * 300.00105 * 11 10 9 37 37 H 1.00906 * 111.00436 * 303.95700 * 12 11 10 38 38 H 0.97001 * 120.00485 * 180.02562 * 16 15 13 39 39 H 0.97005 * 119.99790 * 359.72082 * 16 15 13 40 40 H 1.07990 * 119.94558 * 0.02562 * 19 18 13 41 41 H 1.08004 * 120.05477 * 180.24947 * 20 19 18 42 42 H 1.07997 * 120.06038 * 179.97438 * 28 21 20 43 43 H 1.07999 * 119.94383 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 0.0001 12 7 2.4350 -6.1036 0.0007 13 6 1.7348 -7.3950 0.0007 14 1 0.8213 -7.3129 0.5898 15 6 1.3871 -7.7778 -1.4147 16 7 0.7362 -8.9322 -1.6600 17 8 1.6921 -7.0467 -2.3330 18 6 2.6271 -8.4502 0.6018 19 6 3.9775 -8.4625 0.3031 20 6 4.8001 -9.4239 0.8548 21 6 4.2661 -10.3890 1.7056 22 6 5.1453 -11.4283 2.2981 23 7 4.7737 -12.4130 3.1282 24 7 5.8310 -13.0959 3.4099 25 7 6.8375 -12.5806 2.7946 26 1 7.7497 -12.9073 2.8391 27 7 6.4421 -11.5652 2.1063 28 6 2.9044 -10.3752 1.9989 29 6 2.0916 -9.4067 1.4453 30 1 -0.4851 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6247 -2.5571 0.8896 33 1 2.8719 -3.6042 0.8895 34 1 2.8721 -3.6042 -0.8905 35 1 0.8535 -5.0451 -0.8897 36 1 0.8541 -5.0446 0.8902 37 1 3.0700 -6.0369 -0.7806 38 1 0.5127 -9.1789 -2.5711 39 1 0.4952 -9.5186 -0.9258 40 1 4.3899 -7.7161 -0.3595 41 1 5.8552 -9.4302 0.6242 42 1 2.4853 -11.1214 2.6575 43 1 1.0356 -9.3953 1.6716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737687927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = 99.358525 kcal Electronic energy + Delta-G solvation = -26444.461630 eV Core-core repulsion = 22526.950775 eV Total energy + Delta-G solvation = -3917.510855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.81185 -40.51056 -39.02803 -36.14673 -34.83912 -34.32510 -33.71114 -33.34525 -31.81965 -31.29614 -30.25309 -27.43926 -25.37700 -25.10623 -24.05858 -22.93465 -22.22529 -21.75759 -20.49062 -19.97386 -19.55956 -17.88498 -17.49754 -17.30101 -16.93233 -16.37243 -15.95047 -15.43275 -14.95438 -14.62403 -14.51008 -14.37236 -14.07846 -13.87411 -13.78246 -13.45501 -13.24597 -12.81402 -12.55308 -12.16061 -11.92821 -11.74651 -11.63011 -11.50201 -11.45394 -11.27216 -11.19401 -10.80924 -10.53052 -10.49272 -10.36378 -9.88029 -9.63996 -9.31069 -9.24106 -9.02738 -8.81053 -8.35190 -8.27999 -5.93629 -3.95333 0.35299 0.82448 1.12231 1.86811 1.99214 2.44121 3.29044 3.32506 3.38311 3.41938 3.45007 3.54415 3.83616 4.23683 4.48343 4.53266 4.62691 4.69435 4.83897 4.91055 5.01130 5.11594 5.14927 5.35671 5.42065 5.51247 5.76499 5.80199 5.91940 5.96815 6.07732 6.13249 6.25680 6.37313 6.53476 6.58036 6.72098 6.78509 7.05166 7.19378 7.26135 7.50965 7.74838 7.77577 7.90656 8.05475 8.07083 8.50355 9.11513 9.68119 11.17820 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.002074 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.640691 B =13499.345458 C =14577.659637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.056 3.944 12 N -0.659 5.659 13 C 0.102 3.898 14 H 0.116 0.884 15 C 0.494 3.506 16 N -0.852 5.852 17 O -0.532 6.532 18 C -0.044 4.044 19 C -0.093 4.093 20 C -0.076 4.076 21 C -0.024 4.024 22 C 0.223 3.777 23 N -0.269 5.269 24 N -0.051 5.051 25 N -0.228 5.228 26 H 0.476 0.524 27 N -0.294 5.294 28 C -0.073 4.073 29 C -0.118 4.118 30 H 0.260 0.740 31 H 0.014 0.986 32 H 0.016 0.984 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.351 0.649 38 H 0.399 0.601 39 H 0.401 0.599 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -30.259 3.499 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.072 4.072 12 N -0.290 5.290 13 C -0.013 4.013 14 H 0.134 0.866 15 C 0.277 3.723 16 N -0.416 5.416 17 O -0.407 6.407 18 C -0.046 4.046 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.028 4.028 22 C -0.057 4.057 23 N -0.142 5.142 24 N -0.046 5.046 25 N -0.074 5.074 26 H 0.330 0.670 27 N -0.145 5.145 28 C -0.093 4.093 29 C -0.136 4.136 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.172 0.828 38 H 0.230 0.770 39 H 0.229 0.771 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.643 -30.031 4.093 31.517 hybrid contribution 0.414 0.641 -1.117 1.353 sum 9.057 -29.390 2.977 30.897 Atomic orbital electron populations 1.69956 1.06035 1.26597 1.51064 1.25029 0.94858 0.99230 0.95457 0.86654 0.79560 0.83154 0.78600 1.20277 1.21366 1.20253 1.21220 0.93032 0.91055 1.50279 0.92708 1.19053 0.94011 0.91305 0.97109 1.21594 0.99238 0.92667 1.00828 1.22235 0.94230 0.90551 1.00151 1.60944 1.19186 0.99166 1.49729 1.20659 0.97745 0.91040 0.91856 0.86600 1.21745 0.76889 0.80973 0.92727 1.43923 1.61627 1.23353 1.12723 1.90797 1.53054 1.50944 1.45946 1.19699 0.94284 0.94217 0.96385 1.20935 0.92753 0.97739 0.99693 1.21153 1.00446 0.93026 0.94970 1.17231 0.91572 0.93695 1.00260 1.23756 0.88070 0.96864 0.96962 1.76080 1.18838 1.05110 1.14186 1.78911 0.90612 1.19691 1.15356 1.47740 1.13341 1.17851 1.28490 0.67025 1.74956 1.14143 1.07429 1.17995 1.21079 0.91553 0.98305 0.98375 1.20944 1.00323 0.94702 0.97670 0.93039 0.96739 0.96607 0.92523 0.93413 0.94834 0.91371 0.82830 0.77020 0.77097 0.84873 0.84879 0.84509 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.24 5.41 -26.74 -0.14 -2.39 16 11 C 0.06 0.99 5.38 -3.83 -0.02 0.97 16 12 N -0.66 -9.48 5.56 -109.19 -0.61 -10.08 16 13 C 0.10 1.13 2.60 -70.02 -0.18 0.95 16 14 H 0.12 1.13 7.65 -51.93 -0.40 0.73 16 15 C 0.49 5.87 7.23 -10.99 -0.08 5.79 16 16 N -0.85 -6.49 8.77 31.22 0.27 -6.22 16 17 O -0.53 -8.79 16.14 5.56 0.09 -8.70 16 18 C -0.04 -0.41 4.75 -104.57 -0.50 -0.91 16 19 C -0.09 -0.92 9.30 -39.63 -0.37 -1.29 16 20 C -0.08 -0.70 9.70 -39.26 -0.38 -1.08 16 21 C -0.02 -0.23 5.88 -104.89 -0.62 -0.84 16 22 C 0.22 2.19 7.94 -156.31 -1.24 0.95 16 23 N -0.27 -2.75 12.23 32.15 0.39 -2.36 16 24 N -0.05 -0.43 13.47 60.35 0.81 0.38 16 25 N -0.23 -1.37 7.90 60.35 0.48 -0.89 16 26 H 0.48 0.55 8.96 -340.36 -3.05 -2.50 16 27 N -0.29 -2.51 12.08 32.17 0.39 -2.12 16 28 C -0.07 -0.59 9.70 -39.26 -0.38 -0.97 16 29 C -0.12 -0.88 9.48 -39.63 -0.38 -1.26 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.63 7.62 -51.93 -0.40 0.23 16 36 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 37 H 0.35 5.26 7.08 -39.29 -0.28 4.98 16 38 H 0.40 2.73 8.93 -40.82 -0.36 2.36 16 39 H 0.40 1.90 8.54 -40.82 -0.35 1.55 16 40 H 0.13 1.35 7.24 -52.49 -0.38 0.97 16 41 H 0.13 1.11 7.88 -52.48 -0.41 0.69 16 42 H 0.14 0.96 7.89 -52.49 -0.41 0.54 16 43 H 0.13 0.65 8.03 -52.49 -0.42 0.23 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -36.79 373.71 -9.78 -46.57 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.12 Total: 0.88 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -4.84 Total: -13.47 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 2.47 Total: -48.05 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.79 -9.78 -46.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737687927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.928 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds