Wall clock time and date at job start Tue Mar 31 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34950 * 126.03574 * 2 1 4 4 C 1.35313 * 107.74347 * 179.74833 * 3 2 1 5 5 C 1.50696 * 126.03967 * 180.27772 * 4 3 2 6 6 H 1.09002 * 109.47101 * 346.56856 * 5 4 3 7 7 O 1.42900 * 109.46992 * 226.57530 * 5 4 3 8 8 C 1.50702 * 109.47579 * 106.57486 * 5 4 3 9 9 O 1.21274 * 120.00183 * 101.28349 * 8 5 4 10 10 N 1.34774 * 119.99506 * 281.29060 * 8 5 4 11 11 C 1.46501 * 120.00190 * 354.57913 * 10 8 5 12 12 C 1.50702 * 109.46826 * 95.95040 * 11 10 8 13 13 H 1.07996 * 119.99938 * 1.62534 * 12 11 10 14 14 C 1.37877 * 120.00087 * 181.62821 * 12 11 10 15 15 N 1.31514 * 119.99854 * 5.45388 * 14 12 11 16 16 Si 1.86793 * 120.00377 * 185.45489 * 14 12 11 17 17 H 1.48500 * 109.47014 * 4.74205 * 16 14 12 18 18 H 1.48496 * 109.47198 * 124.73813 * 16 14 12 19 19 H 1.48498 * 109.47218 * 244.74254 * 16 14 12 20 20 C 1.46502 * 119.99792 * 174.58711 * 10 8 5 21 21 C 1.50694 * 109.47594 * 89.99588 * 20 10 8 22 22 C 1.38677 * 120.41838 * 269.72388 * 21 20 10 23 23 C 1.38624 * 118.41992 * 179.77774 * 22 21 20 24 24 C 1.38237 * 119.16281 * 0.51429 * 23 22 21 25 25 N 1.31857 * 120.76050 * 359.72460 * 24 23 22 26 26 C 1.31889 * 121.72551 * 0.02562 * 25 24 23 27 27 C 1.39873 * 107.92256 * 0.39742 * 4 3 2 28 28 N 1.30838 * 108.20030 * 359.59920 * 27 4 3 29 29 H 1.08992 * 109.47327 * 265.02185 * 1 2 3 30 30 H 1.09003 * 109.46819 * 25.02263 * 1 2 3 31 31 H 1.09003 * 109.47154 * 145.01995 * 1 2 3 32 32 H 1.08000 * 126.12421 * 0.02562 * 3 2 1 33 33 H 0.96708 * 114.00031 * 299.99691 * 7 5 4 34 34 H 1.09004 * 109.47337 * 215.94496 * 11 10 8 35 35 H 1.08995 * 109.47297 * 335.94634 * 11 10 8 36 36 H 0.97000 * 120.00020 * 179.97438 * 15 14 12 37 37 H 1.09006 * 109.47017 * 209.99579 * 20 10 8 38 38 H 1.09003 * 109.46838 * 329.99196 * 20 10 8 39 39 H 1.07998 * 120.79172 * 0.02562 * 22 21 20 40 40 H 1.08000 * 120.42336 * 180.22074 * 23 22 21 41 41 H 1.07995 * 119.62092 * 179.74446 * 24 23 22 42 42 H 1.07998 * 119.61401 * 180.02562 * 26 25 24 43 43 H 1.07998 * 125.89900 * 179.86516 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6666 0.0057 5 6 4.7679 1.5453 0.0136 6 1 4.4815 2.5697 -0.2245 7 8 5.6999 1.0726 -0.9611 8 6 5.4056 1.5062 1.3786 9 8 6.3855 0.8181 1.5706 10 7 4.8865 2.2360 2.3858 11 6 3.7772 3.1572 2.1270 12 6 2.4728 2.4771 2.4543 13 1 2.4718 1.4697 2.8434 14 6 1.2806 3.1410 2.2568 15 7 1.2742 4.3246 1.6837 16 14 -0.3255 2.3593 2.8033 17 1 -0.0398 1.0895 3.5183 18 1 -1.0440 3.2882 3.7122 19 1 -1.1693 2.0787 1.6141 20 6 5.4319 2.1081 3.7395 21 6 6.5467 3.1043 3.9283 22 6 7.8556 2.7586 3.6276 23 6 8.8480 3.7087 3.8124 24 6 8.5038 4.9567 4.2970 25 7 7.2489 5.2489 4.5771 26 6 6.2785 4.3717 4.4089 27 6 3.5347 -0.7321 0.0000 28 7 2.2892 -1.1328 0.0000 29 1 -0.3633 -0.0892 1.0237 30 1 -0.3633 0.9313 -0.4347 31 1 -0.3633 -0.8420 -0.5892 32 1 1.9281 2.1193 0.0004 33 1 5.9990 0.1652 -0.8117 34 1 3.8898 4.0454 2.7487 35 1 3.7826 3.4462 1.0761 36 1 0.4355 4.7915 1.5444 37 1 4.6445 2.3015 4.4682 38 1 5.8184 1.0989 3.8816 39 1 8.0956 1.7739 3.2545 40 1 9.8777 3.4753 3.5851 41 1 9.2716 5.7011 4.4477 42 1 5.2623 4.6476 4.6489 43 1 4.4055 -1.3710 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773886990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:28 Heat of formation + Delta-G solvation = 39.256776 kcal Electronic energy + Delta-G solvation = -29261.496509 eV Core-core repulsion = 25309.086695 eV Total energy + Delta-G solvation = -3952.409813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83873 -40.01884 -38.99746 -36.17546 -35.15865 -33.22939 -32.76242 -32.17989 -31.41514 -30.21430 -27.67216 -27.54833 -26.17366 -24.63588 -23.45317 -22.92665 -21.87729 -20.61341 -20.13013 -18.83358 -17.10972 -16.99613 -16.90988 -16.54316 -15.91997 -15.82424 -15.13654 -14.98135 -14.73876 -14.56886 -14.31818 -13.94216 -13.59858 -13.43348 -13.06000 -12.90977 -12.71063 -12.63852 -12.59678 -12.26077 -12.05977 -11.94178 -11.61427 -11.42003 -11.20697 -11.06263 -10.88650 -10.67544 -10.36552 -10.02066 -9.95433 -9.57757 -9.23494 -9.16098 -8.91982 -8.74837 -8.65490 -7.89997 -7.78775 -6.39189 -4.41629 1.31182 1.54311 2.48918 2.92711 2.97588 3.11347 3.12674 3.16843 3.44417 3.74988 4.10614 4.21289 4.67629 4.89236 4.90561 4.99018 5.03806 5.16394 5.23681 5.30474 5.38593 5.42228 5.48331 5.50055 5.65662 5.66627 5.75061 5.89169 5.94646 6.05624 6.14348 6.32260 6.37383 6.54536 6.61115 6.68194 6.94658 7.01002 7.09818 7.33807 7.54027 7.57927 7.85436 7.93588 8.16575 8.19587 8.20699 8.62474 8.84282 9.20735 10.66271 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.005077 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.789324 B = 5514.194281 C = 7106.952330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.379 5.379 3 C 0.142 3.858 4 C -0.281 4.281 5 C 0.181 3.819 6 H 0.124 0.876 7 O -0.543 6.543 8 C 0.499 3.501 9 O -0.569 6.569 10 N -0.584 5.584 11 C 0.234 3.766 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.874 3.126 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.277 1.277 20 C 0.162 3.838 21 C -0.145 4.145 22 C -0.054 4.054 23 C -0.181 4.181 24 C 0.089 3.911 25 N -0.490 5.490 26 C 0.114 3.886 27 C 0.063 3.937 28 N -0.316 5.316 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.188 0.812 33 H 0.376 0.624 34 H 0.036 0.964 35 H 0.042 0.958 36 H 0.267 0.733 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 -2.993 -0.330 5.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.160 5.160 3 C -0.005 4.005 4 C -0.293 4.293 5 C 0.118 3.882 6 H 0.141 0.859 7 O -0.348 6.348 8 C 0.287 3.713 9 O -0.450 6.450 10 N -0.314 5.314 11 C 0.114 3.886 12 C -0.559 4.559 13 H 0.081 0.919 14 C -0.138 4.138 15 N -0.523 5.523 16 Si 0.702 3.298 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.203 1.203 20 C 0.038 3.962 21 C -0.148 4.148 22 C -0.080 4.080 23 C -0.201 4.201 24 C -0.068 4.068 25 N -0.199 5.199 26 C -0.044 4.044 27 C -0.124 4.124 28 N -0.137 5.137 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.205 0.795 33 H 0.224 0.776 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.174 0.826 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.610 -2.772 -0.227 4.557 hybrid contribution -0.367 -0.847 0.462 1.033 sum 3.242 -3.620 0.235 4.865 Atomic orbital electron populations 1.21844 0.75073 1.03820 1.02962 1.48259 1.06118 1.04025 1.57637 1.22615 0.90014 0.93749 0.94156 1.19903 0.94259 0.93622 1.21479 1.19798 0.84772 0.98179 0.85436 0.85855 1.86552 1.62916 1.35174 1.50114 1.21372 0.83320 0.79016 0.87566 1.90554 1.27088 1.43511 1.83885 1.48185 1.34596 1.42055 1.06572 1.19540 0.82831 0.88262 0.97975 1.21476 0.90220 1.01021 1.43156 0.91938 1.24871 0.98716 0.94968 0.95196 1.69932 1.27405 1.13357 1.41652 0.86861 0.83953 0.79808 0.79193 1.19606 1.20762 1.20307 1.20123 0.93369 0.97074 0.85627 1.21418 0.95983 0.97403 1.00011 1.21674 0.92152 1.00043 0.94155 1.22111 1.00453 0.95217 1.02347 1.22690 0.93524 0.95222 0.95362 1.67699 1.00811 1.35219 1.16137 1.22787 0.98542 0.88858 0.94164 1.23454 0.95103 0.94297 0.99550 1.77204 1.01292 1.08694 1.26513 0.91478 0.89431 0.89948 0.79533 0.77636 0.94614 0.93999 0.92315 0.89063 0.90073 0.84401 0.85273 0.83324 0.82590 0.80989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.53 10.97 59.85 0.66 2.19 16 2 N -0.38 -6.82 4.01 -68.16 -0.27 -7.09 16 3 C 0.14 2.65 8.72 -17.22 -0.15 2.50 16 4 C -0.28 -5.15 4.62 -105.06 -0.49 -5.63 16 5 C 0.18 3.32 3.11 -29.04 -0.09 3.22 16 6 H 0.12 2.32 6.19 -51.93 -0.32 2.00 16 7 O -0.54 -9.41 13.07 -54.41 -0.71 -10.12 16 8 C 0.50 9.68 6.91 -10.99 -0.08 9.61 16 9 O -0.57 -11.55 15.27 -13.61 -0.21 -11.76 16 10 N -0.58 -11.16 2.44 -176.43 -0.43 -11.60 16 11 C 0.23 4.88 4.85 -5.19 -0.03 4.86 16 12 C -0.52 -11.57 6.16 -34.44 -0.21 -11.78 16 13 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 14 C 0.07 1.48 4.33 -17.82 -0.08 1.41 16 15 N -0.89 -21.07 13.30 55.43 0.74 -20.34 16 16 Si 0.87 18.06 27.94 -169.99 -4.75 13.31 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -5.28 7.00 56.52 0.40 -4.88 16 20 C 0.16 2.78 5.54 -5.20 -0.03 2.75 16 21 C -0.14 -2.36 5.48 -104.48 -0.57 -2.93 16 22 C -0.05 -0.82 9.74 -39.28 -0.38 -1.20 16 23 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 24 C 0.09 1.23 11.18 -17.54 -0.20 1.03 16 25 N -0.49 -7.97 10.36 -13.25 -0.14 -8.11 16 26 C 0.11 1.86 10.86 -17.55 -0.19 1.67 16 27 C 0.06 1.10 11.51 -17.36 -0.20 0.90 16 28 N -0.32 -5.89 12.58 30.63 0.39 -5.50 16 29 H 0.07 1.02 6.91 -51.93 -0.36 0.66 16 30 H 0.09 1.16 8.13 -51.93 -0.42 0.74 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.19 3.69 6.55 -52.49 -0.34 3.34 16 33 H 0.38 5.55 8.18 45.56 0.37 5.92 16 34 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.04 0.92 5.80 -51.93 -0.30 0.62 16 36 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 37 H 0.09 1.52 8.02 -51.93 -0.42 1.10 16 38 H 0.08 1.39 7.45 -51.93 -0.39 1.00 16 39 H 0.14 2.13 7.49 -52.49 -0.39 1.74 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.16 2.47 8.06 -52.49 -0.42 2.04 16 43 H 0.17 2.57 7.95 -52.49 -0.42 2.15 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -27.66 363.52 -6.99 -34.65 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -4.65 Total: 15.27 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.43 Total: 5.79 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.28 Total: -52.63 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.92 Total: -21.88 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -4.75 Total: 13.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.66 -6.99 -34.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773886990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.910 kcal (2) G-P(sol) polarization free energy of solvation -27.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds