Wall clock time and date at job start Tue Mar 31 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00128 * 2 1 4 4 C 1.53008 * 109.47257 * 175.11506 * 3 2 1 5 5 N 1.46904 * 109.46647 * 63.56327 * 4 3 2 6 6 C 1.46906 * 110.99842 * 72.38139 * 5 4 3 7 7 C 1.53001 * 109.46815 * 200.03725 * 6 5 4 8 8 O 1.42904 * 109.46995 * 64.07824 * 7 6 5 9 9 C 1.42902 * 113.99916 * 184.83817 * 8 7 6 10 10 C 1.46898 * 110.99748 * 196.32781 * 5 4 3 11 11 N 1.46506 * 109.46909 * 66.04853 * 10 5 4 12 12 N 1.40158 * 126.14703 * 269.95549 * 11 10 5 13 13 C 1.32237 * 107.75782 * 179.75947 * 12 11 10 14 14 C 1.40122 * 125.92881 * 180.29187 * 13 12 11 15 15 H 1.07995 * 119.99994 * 180.16568 * 14 13 12 16 16 C 1.40042 * 119.99672 * 0.16869 * 14 13 12 17 17 N 1.30791 * 120.00092 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99777 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47111 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46981 * 119.99859 * 18 16 14 21 21 H 1.48504 * 109.46781 * 240.00087 * 18 16 14 22 22 N 1.38495 * 108.14890 * 0.43450 * 13 12 11 23 23 C 1.46497 * 125.83940 * 179.82012 * 22 13 12 24 24 C 1.34734 * 108.32857 * 359.55820 * 22 13 12 25 25 S 1.71193 * 125.97283 * 180.26020 * 24 22 13 26 26 H 1.09000 * 109.47030 * 64.88581 * 1 2 3 27 27 H 1.08996 * 109.46940 * 184.89116 * 1 2 3 28 28 H 1.08993 * 109.46680 * 304.89120 * 1 2 3 29 29 H 1.09000 * 109.47034 * 55.12067 * 3 2 1 30 30 H 1.09000 * 109.47393 * 295.11758 * 3 2 1 31 31 H 1.08992 * 109.46793 * 303.56805 * 4 3 2 32 32 H 1.08993 * 109.47079 * 183.56281 * 4 3 2 33 33 H 1.08998 * 109.46853 * 320.03782 * 6 5 4 34 34 H 1.08998 * 109.47350 * 80.03956 * 6 5 4 35 35 H 1.09000 * 109.46610 * 184.07125 * 7 6 5 36 36 H 1.08996 * 109.47146 * 304.07770 * 7 6 5 37 37 H 1.09001 * 109.46714 * 304.90603 * 9 8 7 38 38 H 1.08998 * 109.47098 * 64.90184 * 9 8 7 39 39 H 1.08994 * 109.47452 * 184.90372 * 9 8 7 40 40 H 1.09002 * 109.47646 * 306.04853 * 10 5 4 41 41 H 1.08996 * 109.47092 * 186.04978 * 10 5 4 42 42 H 0.97002 * 119.99854 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.47583 * 269.71847 * 23 22 13 44 44 H 1.08999 * 109.47418 * 149.71933 * 23 22 13 45 45 H 1.09002 * 109.47325 * 29.71682 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5308 1.1867 0.1228 5 7 4.0644 0.4914 -1.0561 6 6 4.0103 1.3530 -2.2447 7 6 4.0861 0.4886 -3.5049 8 8 2.9346 -0.3549 -3.5739 9 6 2.9587 -1.2837 -4.6596 10 6 5.4328 0.0161 -0.8123 11 7 5.4127 -1.0196 0.2238 12 7 5.5360 -0.8105 1.6042 13 6 5.4639 -1.9895 2.1987 14 6 5.5380 -2.2204 3.5788 15 1 5.4704 -3.2277 3.9622 16 6 5.6997 -1.1447 4.4609 17 7 5.7820 0.0752 3.9965 18 14 5.7977 -1.4524 6.3008 19 1 5.6789 -2.9086 6.5662 20 1 7.1002 -0.9594 6.8163 21 1 4.6913 -0.7336 6.9824 22 7 5.3057 -2.9570 1.2204 23 6 5.1877 -4.3989 1.4511 24 6 5.2730 -2.3449 0.0206 25 16 5.0868 -3.1155 -1.4967 26 1 -0.3633 0.4362 -0.9305 27 1 -0.3633 -1.0239 0.0876 28 1 -0.3632 0.5878 0.8429 29 1 1.6212 1.8763 0.8431 30 1 1.7596 1.8148 -0.9305 31 1 3.7796 0.6220 1.0213 32 1 3.9689 2.1826 0.1865 33 1 3.0759 1.9140 -2.2445 34 1 4.8508 2.0468 -2.2290 35 1 4.1189 1.1313 -4.3847 36 1 4.9853 -0.1263 -3.4702 37 1 3.1032 -0.7445 -5.5958 38 1 3.7774 -1.9888 -4.5164 39 1 2.0140 -1.8262 -4.6947 40 1 6.0533 0.8490 -0.4814 41 1 5.8427 -0.3990 -1.7330 42 1 5.8935 0.8202 4.6075 43 1 6.1788 -4.8522 1.4321 44 1 4.5703 -4.8425 0.6700 45 1 4.7263 -4.5748 2.4228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794617159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:08 Heat of formation + Delta-G solvation = 9.010703 kcal Electronic energy + Delta-G solvation = -28030.215299 eV Core-core repulsion = 24211.937869 eV Total energy + Delta-G solvation = -3818.277430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75495 -38.39824 -37.23927 -36.27154 -34.17022 -33.70984 -30.81808 -30.43540 -28.91500 -27.07348 -26.49557 -25.90057 -25.58313 -24.11768 -22.38255 -21.65966 -20.83079 -20.17842 -17.70945 -16.84773 -16.35496 -16.01571 -15.87931 -15.74017 -15.58979 -15.15033 -14.89665 -14.62478 -14.59119 -14.40826 -13.87826 -13.62917 -13.46467 -12.88282 -12.42632 -12.21573 -12.15712 -12.07553 -11.80090 -11.74144 -11.52417 -11.50448 -11.21591 -11.10798 -10.99547 -10.58018 -10.51446 -10.42526 -10.37711 -9.98864 -9.45574 -9.23650 -9.12216 -9.07065 -8.80012 -7.91023 -7.01590 -6.59695 -6.46889 -5.08239 2.46328 2.76584 2.78821 2.93014 2.97657 3.51246 3.59224 3.68069 4.09434 4.22369 4.24522 4.35009 4.89227 5.17840 5.28148 5.31293 5.43436 5.49162 5.53548 5.55949 5.63069 5.67646 5.68639 5.74268 5.77874 5.82733 5.89772 5.90264 5.94166 5.98306 6.13138 6.17975 6.18751 6.33663 6.55720 6.67000 6.85449 7.10516 7.26612 7.29922 7.64346 7.67909 7.73561 7.90238 8.30893 8.41449 9.23931 9.95810 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.004714 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.246366 B = 5938.629714 C = 6863.941048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.075 3.925 4 C 0.048 3.952 5 N -0.523 5.523 6 C 0.062 3.938 7 C 0.070 3.930 8 O -0.361 6.361 9 C 0.038 3.962 10 C 0.328 3.672 11 N -0.377 5.377 12 N -0.346 5.346 13 C 0.378 3.622 14 C -0.438 4.438 15 H 0.096 0.904 16 C 0.078 3.922 17 N -0.740 5.740 18 Si 0.927 3.073 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.271 1.271 22 N -0.518 5.518 23 C 0.102 3.898 24 C 0.486 3.514 25 S -0.701 6.701 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.025 0.975 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.283 0.717 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.097 4.639 -4.329 7.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C -0.002 4.002 4 C -0.079 4.079 5 N -0.249 5.249 6 C -0.067 4.067 7 C -0.008 4.008 8 O -0.279 6.279 9 C -0.058 4.058 10 C 0.116 3.884 11 N -0.163 5.163 12 N -0.177 5.177 13 C 0.129 3.871 14 C -0.479 4.479 15 H 0.114 0.886 16 C -0.148 4.148 17 N -0.365 5.365 18 Si 0.750 3.250 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.196 1.196 22 N -0.220 5.220 23 C -0.041 4.041 24 C 0.118 3.882 25 S -0.576 6.576 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.383 4.951 -5.040 8.314 hybrid contribution 0.476 0.468 1.459 1.604 sum -3.908 5.419 -3.582 7.580 Atomic orbital electron populations 1.22641 0.82646 1.02125 0.98838 1.88156 1.17949 1.26630 1.94967 1.22469 0.93801 0.85297 0.98646 1.22291 0.92723 0.97446 0.95458 1.61657 1.20884 1.39113 1.03255 1.22087 1.01526 0.93536 0.89529 1.22447 0.90098 0.92686 0.95560 1.88008 1.40247 1.50013 1.49645 1.22609 1.02496 0.92495 0.88248 1.21670 0.89660 0.87906 0.89184 1.48987 1.56415 1.03278 1.07662 1.79228 1.41202 1.15707 0.81609 1.21215 0.93075 0.81577 0.91260 1.18376 1.47760 0.95975 0.85807 0.88558 1.25805 0.92899 0.94150 1.01927 1.69880 1.29778 0.99411 1.37414 0.85942 0.78787 0.80058 0.80209 1.18191 1.19588 1.19572 1.45935 1.62085 1.09021 1.04930 1.21715 1.02725 0.76550 1.03136 1.22820 0.88291 0.86136 0.90924 1.92572 1.79779 1.73653 1.11616 0.94760 0.90202 0.95056 0.93910 0.94030 0.87280 0.93797 0.89949 0.93418 0.94065 0.92817 0.95661 0.93425 0.90535 0.92242 0.87506 0.90595 0.91714 0.89248 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.07 10.63 -35.23 -0.37 -7.44 16 3 C 0.08 1.25 6.08 37.16 0.23 1.48 16 4 C 0.05 0.88 5.28 -3.82 -0.02 0.86 16 5 N -0.52 -9.60 4.39 -238.53 -1.05 -10.65 16 6 C 0.06 0.89 5.22 -3.82 -0.02 0.87 16 7 C 0.07 1.03 6.13 37.16 0.23 1.26 16 8 O -0.36 -6.37 10.64 -35.23 -0.37 -6.75 16 9 C 0.04 0.58 11.01 101.05 1.11 1.69 16 10 C 0.33 6.46 5.73 -63.31 -0.36 6.09 16 11 N -0.38 -8.90 3.36 -65.05 -0.22 -9.12 16 12 N -0.35 -8.77 9.37 31.21 0.29 -8.48 16 13 C 0.38 9.44 7.50 -155.28 -1.16 8.28 16 14 C -0.44 -10.30 8.98 -38.20 -0.34 -10.65 16 15 H 0.10 2.06 7.11 -52.49 -0.37 1.69 16 16 C 0.08 1.76 5.50 -17.32 -0.10 1.67 16 17 N -0.74 -17.68 11.90 55.55 0.66 -17.01 16 18 Si 0.93 16.71 29.56 -169.99 -5.02 11.68 16 19 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 20 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 22 N -0.52 -12.14 3.17 -124.66 -0.39 -12.54 16 23 C 0.10 1.91 10.65 59.85 0.64 2.55 16 24 C 0.49 11.95 7.84 -86.93 -0.68 11.27 16 25 S -0.70 -17.55 29.49 -107.50 -3.17 -20.72 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 29 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.04 0.62 6.47 -51.93 -0.34 0.29 16 31 H 0.11 2.48 6.13 -51.93 -0.32 2.16 16 32 H 0.04 0.70 8.05 -51.93 -0.42 0.29 16 33 H 0.08 1.12 6.23 -51.93 -0.32 0.80 16 34 H 0.05 0.57 7.99 -51.93 -0.42 0.16 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.86 6.70 -51.93 -0.35 0.51 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.10 8.12 -51.93 -0.42 0.67 16 41 H 0.11 2.09 6.10 -51.93 -0.32 1.77 16 42 H 0.28 6.11 8.30 -40.82 -0.34 5.77 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.68 7.61 -51.93 -0.40 1.28 16 45 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -32.09 384.09 -10.21 -42.31 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.98 Total: 5.94 kcal Atomic # 6 Polarization: 26.36 SS G_CDS: 0.63 Total: 26.99 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.71 Total: -57.79 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.75 Total: -14.19 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.02 Total: 11.68 kcal Atomic # 16 Polarization: -17.55 SS G_CDS: -3.17 Total: -20.72 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.09 -10.21 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794617159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.318 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds