Wall clock time and date at job start Tue Mar 31 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00493 * 2 1 4 4 H 1.48496 * 109.47443 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47132 * 300.00124 * 3 2 1 6 6 H 1.48501 * 109.47122 * 59.99958 * 3 2 1 7 7 C 1.38810 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00042 * 163.07220 * 7 2 1 9 9 N 1.36935 * 120.00259 * 343.06920 * 7 2 1 10 10 C 1.46931 * 120.62902 * 331.85058 * 9 7 2 11 11 C 1.53196 * 108.77234 * 233.58629 * 10 9 7 12 12 C 1.53040 * 109.31512 * 305.36345 * 11 10 9 13 13 C 1.52996 * 109.45923 * 181.38733 * 12 11 10 14 14 N 1.46503 * 109.46980 * 174.97232 * 13 12 11 15 15 C 1.34781 * 120.00268 * 180.02562 * 14 13 12 16 16 O 1.21622 * 119.99706 * 359.97438 * 15 14 13 17 17 C 1.47306 * 120.00167 * 180.02562 * 15 14 13 18 18 C 1.39004 * 120.90732 * 359.97438 * 17 15 14 19 19 C 1.39719 * 119.29497 * 180.23019 * 18 17 15 20 20 C 1.35261 * 121.07470 * 359.51392 * 19 18 17 21 21 N 1.35713 * 121.57549 * 0.46718 * 20 19 18 22 22 N 1.40213 * 134.09008 * 179.75644 * 21 20 19 23 23 N 1.29014 * 106.96068 * 180.02562 * 22 21 20 24 24 N 1.28592 * 110.78726 * 359.97438 * 23 22 21 25 25 C 1.32038 * 110.21592 * 0.02562 * 24 23 22 26 26 C 1.53038 * 109.52528 * 61.37204 * 12 11 10 27 27 C 1.46933 * 120.63311 * 151.82938 * 9 7 2 28 28 H 0.97004 * 119.99509 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58762 * 113.80169 * 10 9 7 30 30 H 1.09003 * 109.70058 * 353.43985 * 10 9 7 31 31 H 1.09007 * 109.49093 * 185.41179 * 11 10 9 32 32 H 1.09003 * 109.49817 * 65.31999 * 11 10 9 33 33 H 1.09005 * 109.46015 * 301.35993 * 12 11 10 34 34 H 1.09001 * 109.47507 * 54.97601 * 13 12 11 35 35 H 1.08989 * 109.47243 * 294.97147 * 13 12 11 36 36 H 0.96996 * 119.99998 * 359.97438 * 14 13 12 37 37 H 1.08000 * 120.35179 * 359.95740 * 18 17 15 38 38 H 1.07999 * 119.46526 * 179.72503 * 19 18 17 39 39 H 1.08007 * 119.21186 * 180.26569 * 20 19 18 40 40 H 1.08997 * 109.49633 * 58.58563 * 26 12 11 41 41 H 1.09004 * 109.49448 * 178.67424 * 26 12 11 42 42 H 1.09001 * 109.58416 * 246.19998 * 27 9 7 43 43 H 1.08994 * 109.58399 * 6.47932 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3699 -2.3625 0.3443 10 6 0.2259 -2.3408 1.2660 11 6 0.4974 -3.3209 2.4118 12 6 0.8118 -4.7021 1.8327 13 6 1.0495 -5.6917 2.9751 14 7 1.2318 -7.0374 2.4255 15 6 1.4561 -8.0782 3.2518 16 8 1.5076 -7.9002 4.4538 17 6 1.6399 -9.4312 2.6991 18 6 1.5852 -9.6561 1.3285 19 6 1.7594 -10.9539 0.8411 20 6 1.9894 -11.9897 1.6800 21 7 2.0512 -11.8151 3.0244 22 7 2.2643 -12.6751 4.1112 23 7 2.2175 -11.9517 5.1784 24 7 1.9971 -10.7192 4.8851 25 6 1.8859 -10.5743 3.5774 26 6 2.0673 -4.6178 0.9616 27 6 1.8137 -3.6528 -0.2008 28 1 -0.4849 0.8401 0.0004 29 1 -0.6772 -2.6410 0.7347 30 1 0.0967 -1.3358 1.6677 31 1 -0.3833 -3.3861 3.0509 32 1 1.3471 -2.9697 2.9973 33 1 -0.0283 -5.0418 1.2269 34 1 0.1899 -5.6863 3.6453 35 1 1.9428 -5.4009 3.5277 36 1 1.1903 -7.1795 1.4669 37 1 1.4055 -8.8371 0.6478 38 1 1.7130 -11.1324 -0.2230 39 1 2.1240 -12.9799 1.2703 40 1 2.9021 -4.2544 1.5609 41 1 2.3043 -5.6064 0.5685 42 1 1.0400 -4.0600 -0.8518 43 1 2.7330 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896665660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:14 Heat of formation + Delta-G solvation = 109.978053 kcal Electronic energy + Delta-G solvation = -27303.819304 eV Core-core repulsion = 23386.768946 eV Total energy + Delta-G solvation = -3917.050358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.49491 -41.05346 -39.58112 -39.14759 -36.43646 -35.20451 -34.41949 -33.12335 -32.59738 -31.67657 -31.24350 -28.50922 -26.60525 -25.65503 -25.35879 -24.36645 -23.72787 -22.60300 -21.90200 -20.69201 -19.87548 -18.80490 -18.60358 -18.46277 -18.04393 -16.91893 -16.74057 -16.53153 -16.36454 -15.69746 -15.40105 -15.25163 -14.99752 -14.80039 -14.69575 -14.17935 -14.02246 -13.96866 -13.75149 -13.67128 -13.42387 -13.24950 -12.97907 -12.80211 -12.56127 -12.54055 -12.20225 -12.17206 -11.97039 -11.78522 -11.57034 -11.30527 -11.29901 -11.06692 -11.01180 -10.50750 -10.18717 -9.70771 -8.62100 -7.84512 -5.28404 -1.06244 -0.58713 0.58548 0.95555 1.46211 1.46856 1.49595 1.58492 1.93645 2.28826 2.49042 2.53339 2.85030 3.30325 3.39322 3.59492 3.73223 3.77042 3.89518 3.99856 4.01755 4.12804 4.21684 4.36680 4.57447 4.58627 4.60917 4.75674 4.76322 4.79393 4.87365 4.98920 5.00058 5.09152 5.19262 5.32212 5.35645 5.37256 5.39705 5.50171 5.61433 5.70893 5.85051 6.43736 6.47686 7.15114 7.16605 7.19801 7.93539 8.42547 9.21357 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031123 B = 0.002157 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.446296 B =12978.737559 C =13425.768372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.613 5.613 10 C 0.177 3.823 11 C -0.125 4.125 12 C -0.076 4.076 13 C 0.137 3.863 14 N -0.698 5.698 15 C 0.557 3.443 16 O -0.563 6.563 17 C -0.137 4.137 18 C 0.025 3.975 19 C -0.113 4.113 20 C 0.119 3.881 21 N -0.306 5.306 22 N -0.122 5.122 23 N -0.040 5.040 24 N -0.347 5.347 25 C 0.253 3.747 26 C -0.116 4.116 27 C 0.139 3.861 28 H 0.248 0.752 29 H 0.002 0.998 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.418 0.582 37 H 0.209 0.791 38 H 0.238 0.762 39 H 0.226 0.774 40 H 0.046 0.954 41 H 0.096 0.904 42 H 0.025 0.975 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -25.324 -6.158 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.337 5.337 10 C 0.051 3.949 11 C -0.164 4.164 12 C -0.095 4.095 13 C 0.013 3.987 14 N -0.351 5.351 15 C 0.344 3.656 16 O -0.442 6.442 17 C -0.147 4.147 18 C 0.000 4.000 19 C -0.136 4.136 20 C -0.007 4.007 21 N -0.086 5.086 22 N -0.105 5.105 23 N -0.033 5.033 24 N -0.206 5.206 25 C -0.004 4.004 26 C -0.155 4.155 27 C 0.014 3.986 28 H 0.057 0.943 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.257 0.743 37 H 0.225 0.775 38 H 0.255 0.745 39 H 0.242 0.758 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.043 0.957 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.274 -25.915 -3.885 26.303 hybrid contribution 0.086 1.595 -0.588 1.702 sum 2.360 -24.319 -4.473 24.840 Atomic orbital electron populations 1.70168 1.06506 1.25575 1.55789 1.25724 0.96006 1.01281 1.01720 0.85319 0.78721 0.80439 0.76659 1.19216 1.21957 1.22056 1.19516 0.92735 0.86238 1.40215 0.91781 1.44350 1.35926 1.02612 1.50831 1.20551 0.87971 0.97343 0.88990 1.21992 1.00736 0.95426 0.98271 1.21153 0.99238 0.93515 0.95610 1.21322 1.01242 0.80103 0.96030 1.45620 1.72116 1.06586 1.10818 1.17818 0.77281 0.84383 0.86144 1.90910 1.51238 1.85431 1.16620 1.20171 1.12091 0.89494 0.92908 1.22758 0.85278 1.00869 0.91123 1.21854 0.98918 0.88847 1.03952 1.23006 0.95633 1.06060 0.75998 1.49146 1.43133 1.06660 1.09703 1.82606 1.27741 1.12793 0.87406 1.77983 1.07955 0.97589 1.19785 1.75131 1.24810 1.09444 1.11197 1.23857 0.98227 0.88211 0.90131 1.21969 0.96564 0.99864 0.97071 1.21111 0.97450 0.85722 0.94320 0.94261 0.98009 0.93500 0.91488 0.93499 0.89505 0.91884 0.92579 0.74279 0.77467 0.74542 0.75787 0.93511 0.88616 0.95701 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.02 11.19 21.65 0.24 -53.77 16 2 C -0.05 -2.84 4.92 84.86 0.42 -2.43 16 3 Si 0.96 44.18 29.59 68.60 2.03 46.21 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 7 C -0.26 -13.59 9.58 84.03 0.81 -12.78 16 8 H 0.06 3.33 7.89 -2.91 -0.02 3.30 16 9 N -0.61 -28.64 2.99 -699.07 -2.09 -30.73 16 10 C 0.18 8.00 5.30 86.36 0.46 8.45 16 11 C -0.12 -4.21 5.36 30.67 0.16 -4.05 16 12 C -0.08 -1.90 2.19 -10.77 -0.02 -1.93 16 13 C 0.14 3.14 5.06 86.38 0.44 3.57 16 14 N -0.70 -11.66 5.23 -466.49 -2.44 -14.09 16 15 C 0.56 12.87 7.77 86.63 0.67 13.54 16 16 O -0.56 -19.80 16.28 -4.10 -0.07 -19.87 16 17 C -0.14 -2.22 6.06 -18.63 -0.11 -2.34 16 18 C 0.02 0.05 9.63 22.81 0.22 0.27 16 19 C -0.11 0.41 9.92 21.94 0.22 0.63 16 20 C 0.12 0.37 11.15 83.41 0.93 1.30 16 21 N -0.31 -5.35 3.94 -188.67 -0.74 -6.10 16 22 N -0.12 -3.05 13.99 37.02 0.52 -2.53 16 23 N -0.04 -1.27 13.36 37.02 0.49 -0.78 16 24 N -0.35 -11.56 11.75 -52.05 -0.61 -12.17 16 25 C 0.25 6.07 7.85 135.76 1.07 7.14 16 26 C -0.12 -2.93 5.25 30.67 0.16 -2.76 16 27 C 0.14 4.85 6.52 86.36 0.56 5.41 16 28 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.05 2.49 6.07 -2.39 -0.01 2.47 16 31 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.42 3.21 5.76 -92.71 -0.53 2.68 16 37 H 0.21 -1.40 6.49 -2.91 -0.02 -1.42 16 38 H 0.24 -3.51 8.06 -2.91 -0.02 -3.54 16 39 H 0.23 -1.20 8.06 -2.91 -0.02 -1.23 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.10 1.50 7.15 -2.38 -0.02 1.48 16 42 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 Total: -1.00 -90.73 357.03 3.83 -86.90 By element: Atomic # 1 Polarization: -7.60 SS G_CDS: 0.52 Total: -7.07 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.98 Total: 14.02 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -4.63 Total: -120.19 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.07 Total: -19.87 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -90.73 3.83 -86.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896665660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.877 kcal (2) G-P(sol) polarization free energy of solvation -90.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds