Wall clock time and date at job start Tue Mar 31 2020 04:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38812 * 120.17811 * 2 1 4 4 N 1.31503 * 121.58729 * 180.02562 * 3 2 1 5 5 C 1.32760 * 121.47545 * 359.97438 * 4 3 2 6 6 C 1.40903 * 119.85701 * 0.02562 * 5 4 3 7 7 C 1.45856 * 106.46429 * 179.97438 * 6 5 4 8 8 N 1.30247 * 107.65211 * 359.97438 * 7 6 5 9 9 N 1.36829 * 133.57804 * 179.97438 * 5 4 3 10 10 C 1.46498 * 125.38733 * 0.05012 * 9 5 4 11 11 C 1.50698 * 109.47386 * 269.97240 * 10 9 5 12 12 O 1.21287 * 119.99512 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00252 * 180.02562 * 11 10 9 14 14 C 1.47020 * 125.64866 * 0.02562 * 13 11 10 15 15 C 1.54319 * 107.27103 * 181.02729 * 14 13 11 16 16 C 1.55155 * 102.94440 * 22.19088 * 15 14 13 17 17 O 1.42897 * 111.00237 * 82.61186 * 16 15 14 18 18 C 1.50703 * 111.00467 * 206.42753 * 16 15 14 19 19 H 1.08000 * 120.00224 * 118.54863 * 18 16 15 20 20 C 1.37871 * 119.99871 * 298.54173 * 18 16 15 21 21 N 1.31520 * 120.00268 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00108 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46849 * 90.00494 * 22 20 18 24 24 H 1.48506 * 109.47437 * 210.00297 * 22 20 18 25 25 H 1.48502 * 109.47383 * 330.00576 * 22 20 18 26 26 C 1.47420 * 125.64661 * 179.71305 * 13 11 10 27 27 C 1.37021 * 120.17943 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47279 * 269.97783 * 1 2 3 29 29 H 1.09002 * 109.47267 * 29.97986 * 1 2 3 30 30 H 1.09002 * 109.47030 * 149.98000 * 1 2 3 31 31 H 1.08000 * 119.20341 * 0.04195 * 3 2 1 32 32 H 1.07994 * 126.17462 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47198 * 29.96846 * 10 9 5 34 34 H 1.08999 * 109.47206 * 149.96979 * 10 9 5 35 35 H 1.09003 * 109.88351 * 300.44188 * 14 13 11 36 36 H 1.08999 * 109.88102 * 61.60814 * 14 13 11 37 37 H 1.09001 * 110.72087 * 140.55988 * 15 14 13 38 38 H 1.09006 * 110.71696 * 263.65377 * 15 14 13 39 39 H 0.96696 * 114.00347 * 61.45512 * 17 16 15 40 40 H 0.96998 * 120.00255 * 179.97438 * 21 20 18 41 41 H 1.08992 * 110.37299 * 274.74590 * 26 13 11 42 42 H 1.08999 * 110.36879 * 37.07141 * 26 13 11 43 43 H 1.08001 * 120.91481 * 0.25342 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2000 0.0000 4 7 3.5194 1.2323 -0.0005 5 6 4.2402 0.1175 -0.0005 6 6 3.5949 -1.1351 -0.0005 7 6 4.6490 -2.1432 -0.0012 8 7 5.7922 -1.5192 -0.0021 9 7 5.5847 -0.1364 -0.0014 10 6 6.6400 0.8797 -0.0016 11 6 7.0015 1.2283 -1.4225 12 8 6.4339 0.6813 -2.3442 13 7 7.9563 2.1471 -1.6690 14 6 8.7214 2.8820 -0.6511 15 6 9.6761 3.8378 -1.3971 16 6 8.9963 3.9964 -2.7828 17 8 7.9619 4.9812 -2.7361 18 6 10.0099 4.3317 -3.8464 19 1 10.1593 3.6619 -4.6803 20 6 10.7464 5.4937 -3.7550 21 7 10.5647 6.3092 -2.7393 22 14 12.0032 5.9090 -5.0730 23 1 11.3510 6.7006 -6.1470 24 1 13.1058 6.7026 -4.4732 25 1 12.5520 4.6540 -5.6469 26 6 8.4109 2.5768 -3.0038 27 6 2.1958 -1.1845 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6547 2.1294 0.0007 32 1 4.5071 -3.2138 -0.0010 33 1 6.2845 1.7729 0.5123 34 1 7.5192 0.4907 0.5120 35 1 8.0428 3.4547 -0.0190 36 1 9.2965 2.1833 -0.0435 37 1 9.7376 4.7983 -0.8854 38 1 10.6658 3.3925 -1.4987 39 1 8.2723 5.8670 -2.5036 40 1 11.0831 7.1265 -2.6748 41 1 9.1796 1.9011 -3.3786 42 1 7.5700 2.6174 -3.6962 43 1 1.6738 -2.1299 -0.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899207079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:13 Heat of formation + Delta-G solvation = 25.224885 kcal Electronic energy + Delta-G solvation = -27830.426738 eV Core-core repulsion = 23877.408456 eV Total energy + Delta-G solvation = -3953.018282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65548 -39.53276 -38.39027 -37.23117 -34.34144 -34.12622 -32.85146 -32.25275 -30.78862 -30.00990 -28.66700 -27.80937 -26.41137 -24.88316 -24.15837 -22.51872 -21.83722 -21.11614 -19.82278 -19.00300 -17.69197 -17.33081 -17.00289 -16.90308 -16.07331 -15.40259 -15.33434 -14.98992 -14.89323 -14.23762 -14.21865 -14.05155 -13.76799 -13.55379 -13.32445 -13.08803 -12.80455 -12.59652 -12.35217 -12.27342 -12.19846 -11.96288 -11.67868 -11.37787 -11.34844 -11.05725 -10.93179 -10.68442 -10.61070 -10.48946 -10.06562 -9.59971 -9.53336 -9.41857 -9.04031 -8.71292 -8.27742 -8.21042 -8.07424 -6.31457 -4.39492 0.69250 1.16723 1.98510 2.39196 2.92316 3.18691 3.26043 3.29055 3.44673 3.68267 4.08465 4.18783 4.24662 4.48639 4.61327 4.75103 4.76783 4.95904 4.97672 5.07541 5.11765 5.27395 5.35705 5.42001 5.47940 5.53307 5.65961 5.69019 5.78081 5.95635 6.05988 6.14838 6.20055 6.38658 6.42123 6.59223 6.69590 6.83789 6.90536 7.25265 7.30116 7.37483 7.70273 7.84908 7.96938 8.02934 8.50212 8.63389 9.27710 9.36737 10.75990 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.002605 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.035328 B =10745.987854 C =11230.180259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.188 4.188 3 C 0.172 3.828 4 N -0.495 5.495 5 C 0.322 3.678 6 C -0.225 4.225 7 C 0.079 3.921 8 N -0.226 5.226 9 N -0.372 5.372 10 C 0.129 3.871 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.603 5.603 14 C 0.093 3.907 15 C -0.135 4.135 16 C 0.248 3.752 17 O -0.581 6.581 18 C -0.535 4.535 19 H 0.064 0.936 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.122 3.878 27 C 0.003 3.997 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.164 0.836 32 H 0.201 0.799 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.381 0.619 40 H 0.268 0.732 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 -11.847 10.902 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.192 4.192 3 C 0.002 3.998 4 N -0.208 5.208 5 C 0.084 3.916 6 C -0.235 4.235 7 C -0.119 4.119 8 N -0.038 5.038 9 N -0.162 5.162 10 C 0.004 3.996 11 C 0.295 3.705 12 O -0.418 6.418 13 N -0.337 5.337 14 C -0.030 4.030 15 C -0.174 4.174 16 C 0.208 3.792 17 O -0.390 6.390 18 C -0.573 4.573 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C 0.001 3.999 27 C -0.026 4.026 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.217 0.783 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.230 0.770 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.846 -11.778 10.348 20.268 hybrid contribution 0.049 0.232 -0.524 0.576 sum -12.797 -11.545 9.824 19.838 Atomic orbital electron populations 1.20601 0.89814 1.03021 1.02269 1.20382 0.97658 0.93791 1.07398 1.22649 0.87776 0.97839 0.91531 1.66748 1.07759 1.28899 1.17381 1.18908 0.85961 0.90492 0.96261 1.20472 0.95005 0.93889 1.14100 1.24993 0.87754 0.99666 0.99523 1.76710 1.23569 0.86577 1.16906 1.47601 1.01842 1.03251 1.63487 1.21444 0.91002 0.90634 0.96541 1.20262 0.79646 0.79702 0.90910 1.90704 1.52549 1.52666 1.45869 1.48575 1.36316 1.38770 1.09999 1.22294 0.94617 0.94768 0.91294 1.23177 0.97153 0.98292 0.98759 1.19641 0.84483 0.83711 0.91369 1.86149 1.37402 1.22089 1.93354 1.21430 1.20197 1.06906 1.08798 0.91731 1.24984 0.96644 0.95676 0.95665 1.69713 1.41802 1.12326 1.29582 0.86413 0.80492 0.78581 0.81474 1.20390 1.21040 1.19714 1.22443 0.98649 0.95933 0.82919 1.20588 0.90779 0.98516 0.92685 0.91296 0.91271 0.91544 0.81934 0.78257 0.85913 0.86143 0.92113 0.92590 0.89361 0.91213 0.76954 0.92203 0.90894 0.91190 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.02 36.00 0.36 -0.23 16 2 C -0.19 -1.81 5.86 -104.85 -0.61 -2.43 16 3 C 0.17 2.02 10.82 -17.48 -0.19 1.83 16 4 N -0.49 -7.79 10.40 -12.34 -0.13 -7.92 16 5 C 0.32 5.22 7.97 -156.12 -1.24 3.98 16 6 C -0.22 -2.96 6.38 -105.18 -0.67 -3.64 16 7 C 0.08 0.96 12.29 -15.18 -0.19 0.77 16 8 N -0.23 -3.47 12.40 31.85 0.39 -3.07 16 9 N -0.37 -6.17 3.13 -61.61 -0.19 -6.36 16 10 C 0.13 2.02 6.08 -5.20 -0.03 1.99 16 11 C 0.51 10.18 7.92 -10.99 -0.09 10.09 16 12 O -0.54 -12.92 16.69 5.55 0.09 -12.83 16 13 N -0.60 -12.12 3.32 -170.39 -0.57 -12.69 16 14 C 0.09 1.63 6.48 -3.07 -0.02 1.61 16 15 C -0.14 -2.83 5.37 -24.90 -0.13 -2.97 16 16 C 0.25 5.96 0.87 -89.50 -0.08 5.88 16 17 O -0.58 -14.78 13.17 -35.23 -0.46 -15.24 16 18 C -0.53 -13.87 8.27 -34.44 -0.28 -14.15 16 19 H 0.06 1.68 7.79 -52.49 -0.41 1.27 16 20 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 21 N -0.90 -22.72 10.76 55.43 0.60 -22.12 16 22 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.12 2.78 6.10 -2.41 -0.01 2.76 16 27 C 0.00 0.03 9.83 -39.36 -0.39 -0.36 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.12 1.74 8.14 -51.93 -0.42 1.31 16 34 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.93 7.55 -51.93 -0.39 1.53 16 38 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 39 H 0.38 9.57 7.57 45.56 0.34 9.91 16 40 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 42 H 0.07 1.72 8.04 -51.93 -0.42 1.30 16 43 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -33.53 366.64 -8.50 -42.04 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.06 Total: 10.69 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -3.68 Total: 6.90 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.10 Total: -52.17 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.37 Total: -28.07 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.53 -8.50 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899207079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.262 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds