Wall clock time and date at job start Tue Mar 31 2020 04:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38812 * 120.17811 * 2 1 4 4 N 1.31503 * 121.58729 * 180.02562 * 3 2 1 5 5 C 1.32760 * 121.47545 * 359.97438 * 4 3 2 6 6 C 1.40903 * 119.85701 * 0.02562 * 5 4 3 7 7 C 1.45856 * 106.46429 * 179.97438 * 6 5 4 8 8 N 1.30247 * 107.65211 * 359.97438 * 7 6 5 9 9 N 1.36829 * 133.57804 * 179.97438 * 5 4 3 10 10 C 1.46498 * 125.38733 * 0.05012 * 9 5 4 11 11 C 1.50698 * 109.47386 * 269.97240 * 10 9 5 12 12 O 1.21287 * 119.99512 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00252 * 180.02562 * 11 10 9 14 14 C 1.47020 * 125.64866 * 0.02562 * 13 11 10 15 15 C 1.54319 * 107.27103 * 181.02729 * 14 13 11 16 16 C 1.55155 * 102.94440 * 22.19088 * 15 14 13 17 17 O 1.42897 * 111.00237 * 82.61186 * 16 15 14 18 18 C 1.50703 * 111.00467 * 206.42753 * 16 15 14 19 19 H 1.08000 * 120.00224 * 118.54863 * 18 16 15 20 20 C 1.37871 * 119.99871 * 298.54173 * 18 16 15 21 21 N 1.31520 * 120.00268 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00108 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46849 * 90.00494 * 22 20 18 24 24 H 1.48506 * 109.47437 * 210.00297 * 22 20 18 25 25 H 1.48502 * 109.47383 * 330.00576 * 22 20 18 26 26 C 1.47420 * 125.64661 * 179.71305 * 13 11 10 27 27 C 1.37021 * 120.17943 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47279 * 269.97783 * 1 2 3 29 29 H 1.09002 * 109.47267 * 29.97986 * 1 2 3 30 30 H 1.09002 * 109.47030 * 149.98000 * 1 2 3 31 31 H 1.08000 * 119.20341 * 0.04195 * 3 2 1 32 32 H 1.07994 * 126.17462 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47198 * 29.96846 * 10 9 5 34 34 H 1.08999 * 109.47206 * 149.96979 * 10 9 5 35 35 H 1.09003 * 109.88351 * 300.44188 * 14 13 11 36 36 H 1.08999 * 109.88102 * 61.60814 * 14 13 11 37 37 H 1.09001 * 110.72087 * 140.55988 * 15 14 13 38 38 H 1.09006 * 110.71696 * 263.65377 * 15 14 13 39 39 H 0.96696 * 114.00347 * 61.45512 * 17 16 15 40 40 H 0.96998 * 120.00255 * 179.97438 * 21 20 18 41 41 H 1.08992 * 110.37299 * 274.74590 * 26 13 11 42 42 H 1.08999 * 110.36879 * 37.07141 * 26 13 11 43 43 H 1.08001 * 120.91481 * 0.25342 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2000 0.0000 4 7 3.5194 1.2323 -0.0005 5 6 4.2402 0.1175 -0.0005 6 6 3.5949 -1.1351 -0.0005 7 6 4.6490 -2.1432 -0.0012 8 7 5.7922 -1.5192 -0.0021 9 7 5.5847 -0.1364 -0.0014 10 6 6.6400 0.8797 -0.0016 11 6 7.0015 1.2283 -1.4225 12 8 6.4339 0.6813 -2.3442 13 7 7.9563 2.1471 -1.6690 14 6 8.7214 2.8820 -0.6511 15 6 9.6761 3.8378 -1.3971 16 6 8.9963 3.9964 -2.7828 17 8 7.9619 4.9812 -2.7361 18 6 10.0099 4.3317 -3.8464 19 1 10.1593 3.6619 -4.6803 20 6 10.7464 5.4937 -3.7550 21 7 10.5647 6.3092 -2.7393 22 14 12.0032 5.9090 -5.0730 23 1 11.3510 6.7006 -6.1470 24 1 13.1058 6.7026 -4.4732 25 1 12.5520 4.6540 -5.6469 26 6 8.4109 2.5768 -3.0038 27 6 2.1958 -1.1845 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6547 2.1294 0.0007 32 1 4.5071 -3.2138 -0.0010 33 1 6.2845 1.7729 0.5123 34 1 7.5192 0.4907 0.5120 35 1 8.0428 3.4547 -0.0190 36 1 9.2965 2.1833 -0.0435 37 1 9.7376 4.7983 -0.8854 38 1 10.6658 3.3925 -1.4987 39 1 8.2723 5.8670 -2.5036 40 1 11.0831 7.1265 -2.6748 41 1 9.1796 1.9011 -3.3786 42 1 7.5700 2.6174 -3.6962 43 1 1.6738 -2.1299 -0.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899207079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:12 Heat of formation + Delta-G solvation = 1.387164 kcal Electronic energy + Delta-G solvation = -27831.460419 eV Core-core repulsion = 23877.408456 eV Total energy + Delta-G solvation = -3954.051963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61752 -41.10606 -39.42526 -38.88073 -36.16221 -35.07823 -34.24489 -33.83796 -31.77564 -31.57729 -30.24229 -29.06889 -27.42699 -26.53798 -25.05246 -24.08258 -22.74987 -22.21711 -21.56846 -20.47319 -19.17445 -18.74684 -18.49552 -17.93184 -17.13373 -16.92913 -16.82812 -16.60593 -16.30868 -15.81174 -15.45549 -15.12970 -14.94956 -14.78750 -14.32450 -14.22451 -14.07339 -13.85985 -13.66108 -13.45878 -13.32661 -13.22513 -13.12613 -13.07213 -12.84013 -12.68841 -12.51289 -12.27343 -12.01159 -11.88626 -11.65420 -11.32669 -11.00600 -10.66528 -10.45594 -10.19646 -10.05556 -9.70597 -9.16737 -8.26207 -6.41171 -0.19429 0.28816 0.96558 1.39081 1.40510 1.43839 1.46261 1.52310 1.97753 2.38337 2.75535 2.98156 3.18100 3.26460 3.35581 3.67119 3.74316 3.79222 3.93140 4.00240 4.02188 4.08428 4.28427 4.33242 4.39391 4.42441 4.52599 4.61796 4.66944 4.81502 4.86616 4.97651 5.11840 5.16450 5.22055 5.34434 5.37184 5.41757 5.51792 5.58224 5.74533 5.79231 6.05110 6.40169 6.45135 6.62007 6.89894 6.95913 7.28751 7.37436 8.79744 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.002605 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.035328 B =10745.987854 C =11230.180259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.182 4.182 3 C 0.158 3.842 4 N -0.539 5.539 5 C 0.284 3.716 6 C -0.240 4.240 7 C 0.097 3.903 8 N -0.265 5.265 9 N -0.394 5.394 10 C 0.140 3.860 11 C 0.505 3.495 12 O -0.588 6.588 13 N -0.605 5.605 14 C 0.098 3.902 15 C -0.125 4.125 16 C 0.235 3.765 17 O -0.593 6.593 18 C -0.563 4.563 19 H 0.052 0.948 20 C 0.039 3.961 21 N -0.904 5.904 22 Si 0.959 3.041 23 H -0.280 1.280 24 H -0.275 1.275 25 H -0.273 1.273 26 C 0.127 3.873 27 C 0.008 3.992 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.185 0.815 32 H 0.247 0.753 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.379 0.621 40 H 0.272 0.728 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.458 -13.226 12.398 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.186 4.186 3 C -0.010 4.010 4 N -0.253 5.253 5 C 0.047 3.953 6 C -0.250 4.250 7 C -0.101 4.101 8 N -0.076 5.076 9 N -0.184 5.184 10 C 0.014 3.986 11 C 0.293 3.707 12 O -0.469 6.469 13 N -0.338 5.338 14 C -0.023 4.023 15 C -0.163 4.163 16 C 0.195 3.805 17 O -0.402 6.402 18 C -0.601 4.601 19 H 0.070 0.930 20 C -0.163 4.163 21 N -0.543 5.543 22 Si 0.785 3.215 23 H -0.206 1.206 24 H -0.200 1.200 25 H -0.198 1.198 26 C 0.004 3.996 27 C -0.020 4.020 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.202 0.798 32 H 0.263 0.737 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.228 0.772 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.163 -13.149 11.880 22.685 hybrid contribution 0.283 0.662 -1.026 1.253 sum -13.881 -12.487 10.854 21.597 Atomic orbital electron populations 1.20681 0.86786 1.04218 1.03620 1.20814 0.99646 0.92859 1.05266 1.23244 0.87017 0.99991 0.90740 1.66708 1.09511 1.29758 1.19363 1.19349 0.86314 0.91930 0.97718 1.20876 0.96543 0.93100 1.14468 1.25825 0.86508 1.01405 0.96401 1.76653 1.25307 0.86357 1.19314 1.47685 1.02051 1.03679 1.64977 1.21415 0.92430 0.91653 0.93075 1.21161 0.78454 0.78556 0.92546 1.90662 1.54053 1.54324 1.47841 1.48639 1.36772 1.39046 1.09307 1.22391 0.94390 0.95007 0.90527 1.22953 0.97484 0.98783 0.97118 1.19801 0.84206 0.83569 0.92907 1.86137 1.38253 1.22276 1.93533 1.21626 1.21466 1.07575 1.09427 0.92973 1.25581 0.97954 0.95408 0.97381 1.69769 1.42012 1.12329 1.30168 0.85541 0.78616 0.78155 0.79183 1.20640 1.20049 1.19769 1.22196 0.97396 0.95777 0.84205 1.21115 0.89572 1.00468 0.90878 0.89697 0.90558 0.89934 0.79783 0.73684 0.84782 0.83257 0.90371 0.88458 0.90247 0.91588 0.77203 0.91872 0.90849 0.94265 0.80272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.02 71.24 0.71 -0.08 16 2 C -0.18 -3.06 5.86 -20.01 -0.12 -3.18 16 3 C 0.16 3.59 10.82 84.88 0.92 4.51 16 4 N -0.54 -17.17 10.40 -192.96 -2.01 -19.17 16 5 C 0.28 9.24 7.97 134.12 1.07 10.31 16 6 C -0.24 -6.00 6.38 -20.23 -0.13 -6.13 16 7 C 0.10 2.17 12.29 86.90 1.07 3.23 16 8 N -0.27 -7.98 12.40 -53.15 -0.66 -8.64 16 9 N -0.39 -13.09 3.13 -348.82 -1.09 -14.18 16 10 C 0.14 4.33 6.08 85.63 0.52 4.85 16 11 C 0.50 20.55 7.92 87.66 0.69 21.25 16 12 O -0.59 -29.28 16.69 -3.05 -0.05 -29.34 16 13 N -0.61 -24.55 3.32 -811.36 -2.70 -27.25 16 14 C 0.10 3.32 6.48 86.73 0.56 3.89 16 15 C -0.12 -5.21 5.37 31.78 0.17 -5.04 16 16 C 0.24 11.58 0.87 -10.07 -0.01 11.57 16 17 O -0.59 -31.06 13.17 -148.98 -1.96 -33.03 16 18 C -0.56 -29.89 8.27 25.60 0.21 -29.67 16 19 H 0.05 2.81 7.79 -2.91 -0.02 2.79 16 20 C 0.04 1.97 5.29 84.65 0.45 2.42 16 21 N -0.90 -45.92 10.76 21.45 0.23 -45.69 16 22 Si 0.96 41.33 29.54 68.60 2.03 43.36 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 C 0.13 6.01 6.10 86.94 0.53 6.54 16 27 C 0.01 0.13 9.83 22.41 0.22 0.35 16 28 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 30 H 0.08 0.47 8.09 -2.39 -0.02 0.45 16 31 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 32 H 0.25 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.13 3.75 8.14 -2.39 -0.02 3.74 16 34 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.10 2.54 8.14 -2.39 -0.02 2.53 16 37 H 0.08 3.45 7.55 -2.39 -0.02 3.43 16 38 H 0.07 2.77 8.04 -2.38 -0.02 2.75 16 39 H 0.38 19.55 7.57 -74.06 -0.56 18.99 16 40 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 41 H 0.07 3.40 8.03 -2.39 -0.02 3.38 16 42 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 43 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -76.97 366.64 1.15 -75.82 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.49 Total: 33.31 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 6.87 Total: 24.81 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -6.22 Total: -114.93 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -2.01 Total: -62.36 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -76.97 1.15 -75.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899207079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.211 kcal (2) G-P(sol) polarization free energy of solvation -76.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds