Wall clock time and date at job start Tue Mar 31 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38803 * 120.17338 * 2 1 4 4 N 1.31510 * 121.58250 * 179.97438 * 3 2 1 5 5 C 1.32762 * 121.47533 * 0.02562 * 4 3 2 6 6 C 1.40908 * 119.85628 * 0.02562 * 5 4 3 7 7 C 1.45850 * 106.46087 * 180.02562 * 6 5 4 8 8 N 1.30244 * 107.65777 * 359.97438 * 7 6 5 9 9 N 1.36825 * 133.57360 * 180.02562 * 5 4 3 10 10 C 1.46497 * 125.39319 * 359.97438 * 9 5 4 11 11 C 1.50697 * 109.47106 * 270.02234 * 10 9 5 12 12 O 1.21284 * 120.00083 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00128 * 179.97438 * 11 10 9 14 14 C 1.47428 * 125.64641 * 0.02562 * 13 11 10 15 15 C 1.54910 * 104.82939 * 204.09188 * 14 13 11 16 16 C 1.55150 * 101.58619 * 322.99213 * 15 14 13 17 17 O 1.42904 * 110.72101 * 277.14248 * 16 15 14 18 18 C 1.50702 * 110.72166 * 154.04320 * 16 15 14 19 19 H 1.07998 * 119.99659 * 241.45011 * 18 16 15 20 20 C 1.37871 * 119.99953 * 61.45720 * 18 16 15 21 21 N 1.31516 * 120.00339 * 359.97438 * 20 18 16 22 22 Si 1.86806 * 119.99932 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47263 * 59.99503 * 22 20 18 24 24 H 1.48500 * 109.46907 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46712 * 299.99758 * 22 20 18 26 26 C 1.47024 * 125.64981 * 179.71568 * 13 11 10 27 27 C 1.37019 * 120.17322 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47396 * 89.99501 * 1 2 3 29 29 H 1.09003 * 109.47033 * 209.99587 * 1 2 3 30 30 H 1.09003 * 109.47116 * 329.99674 * 1 2 3 31 31 H 1.08000 * 119.20768 * 0.02562 * 3 2 1 32 32 H 1.08001 * 126.17423 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47069 * 30.02083 * 10 9 5 34 34 H 1.09004 * 109.47111 * 150.02052 * 10 9 5 35 35 H 1.08996 * 110.36615 * 322.93450 * 14 13 11 36 36 H 1.09005 * 110.36322 * 85.14633 * 14 13 11 37 37 H 1.08998 * 111.00203 * 81.07194 * 15 14 13 38 38 H 1.08997 * 111.00477 * 204.91572 * 15 14 13 39 39 H 0.96706 * 113.99593 * 298.54058 * 17 16 15 40 40 H 0.96995 * 120.00059 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.88022 * 298.39619 * 26 13 11 42 42 H 1.09003 * 109.88171 * 59.55444 * 26 13 11 43 43 H 1.07996 * 120.92377 * 0.03943 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2047 1.2000 0.0000 4 7 3.5194 1.2323 0.0005 5 6 4.2402 0.1174 0.0005 6 6 3.5949 -1.1352 -0.0005 7 6 4.6489 -2.1432 0.0004 8 7 5.7922 -1.5193 0.0013 9 7 5.5847 -0.1364 0.0014 10 6 6.6400 0.8798 0.0021 11 6 7.0024 1.2286 -1.4184 12 8 6.4354 0.6819 -2.3406 13 7 7.9566 2.1482 -1.6640 14 6 8.7224 2.8857 -0.6427 15 6 9.1860 4.1815 -1.3537 16 6 9.4891 3.6611 -2.7835 17 8 10.7959 3.0861 -2.8459 18 6 9.3472 4.7688 -3.7954 19 1 8.6128 4.6897 -4.5832 20 6 10.1551 5.8832 -3.7154 21 7 11.0492 5.9797 -2.7558 22 14 9.9787 7.2566 -4.9693 23 1 8.6009 7.8073 -4.9098 24 1 10.9552 8.3332 -4.6648 25 1 10.2395 6.7213 -6.3297 26 6 8.4108 2.5773 -2.9949 27 6 2.1957 -1.1845 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6546 2.1294 0.0004 32 1 4.5071 -3.2138 -0.0004 33 1 6.2842 1.7727 0.5161 34 1 7.5189 0.4905 0.5163 35 1 8.0854 3.1269 0.2083 36 1 9.5828 2.3006 -0.3178 37 1 8.3892 4.9251 -1.3692 38 1 10.0845 4.5839 -0.8858 39 1 11.5089 3.7072 -2.6434 40 1 11.6173 6.7639 -2.6994 41 1 8.8349 1.7295 -3.5330 42 1 7.5741 2.9938 -3.5557 43 1 1.6738 -2.1300 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899207082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:16 Heat of formation + Delta-G solvation = 25.128191 kcal Electronic energy + Delta-G solvation = -27790.891819 eV Core-core repulsion = 23837.869344 eV Total energy + Delta-G solvation = -3953.022475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.67619 -39.56122 -38.41232 -37.27411 -34.38344 -34.15078 -32.87505 -32.24805 -30.80847 -29.95719 -28.70303 -27.82113 -26.42978 -24.88764 -24.18048 -22.54848 -21.86557 -21.17397 -19.81140 -18.98820 -17.73899 -17.35142 -17.03151 -16.88372 -16.08157 -15.48881 -15.37862 -14.97921 -14.87953 -14.27568 -14.18478 -14.10046 -13.81275 -13.57651 -13.32880 -13.03137 -12.82778 -12.66979 -12.36155 -12.29314 -12.10623 -11.97832 -11.57302 -11.43101 -11.38978 -11.06738 -10.90897 -10.71203 -10.61846 -10.52742 -10.15140 -9.63137 -9.56791 -9.40514 -9.06157 -8.70158 -8.29082 -8.23176 -8.10430 -6.31617 -4.39114 0.67005 1.14373 1.96523 2.37681 2.89622 3.20842 3.25298 3.28616 3.41577 3.65921 4.05733 4.16918 4.24940 4.46640 4.58903 4.72561 4.74478 4.94109 4.96851 5.05609 5.09082 5.25050 5.34638 5.39870 5.46729 5.50819 5.66720 5.68172 5.84016 5.94641 6.03767 6.12552 6.13053 6.39852 6.40144 6.61678 6.68489 6.84663 6.90759 7.25335 7.30451 7.35791 7.70140 7.81898 7.97441 7.98981 8.47773 8.63258 9.26788 9.35929 10.76003 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.002715 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.923201 B =10309.761019 C =11128.943215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.188 4.188 3 C 0.171 3.829 4 N -0.496 5.496 5 C 0.322 3.678 6 C -0.224 4.224 7 C 0.080 3.920 8 N -0.225 5.225 9 N -0.372 5.372 10 C 0.129 3.871 11 C 0.508 3.492 12 O -0.540 6.540 13 N -0.605 5.605 14 C 0.090 3.910 15 C -0.134 4.134 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.125 3.875 27 C 0.003 3.997 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.163 0.837 32 H 0.201 0.799 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.382 0.618 40 H 0.269 0.731 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.789 -10.705 11.062 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.192 4.192 3 C 0.002 3.998 4 N -0.209 5.209 5 C 0.083 3.917 6 C -0.234 4.234 7 C -0.119 4.119 8 N -0.037 5.037 9 N -0.162 5.162 10 C 0.004 3.996 11 C 0.293 3.707 12 O -0.417 6.417 13 N -0.338 5.338 14 C -0.033 4.033 15 C -0.172 4.172 16 C 0.208 3.792 17 O -0.394 6.394 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C 0.003 3.997 27 C -0.025 4.025 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.181 0.819 32 H 0.218 0.782 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.233 0.767 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.375 -10.701 10.504 20.773 hybrid contribution -0.793 0.758 -0.541 1.223 sum -15.168 -9.943 9.963 20.693 Atomic orbital electron populations 1.20604 0.89814 1.02869 1.02432 1.20378 0.97659 0.93790 1.07409 1.22638 0.87778 0.97828 0.91589 1.66741 1.07755 1.28899 1.17507 1.18909 0.85963 0.90507 0.96286 1.20474 0.95002 0.93890 1.14046 1.25003 0.87739 0.99692 0.99488 1.76733 1.23541 0.86546 1.16831 1.47606 1.01806 1.03279 1.63494 1.21444 0.91073 0.90621 0.96473 1.20277 0.79836 0.79585 0.90962 1.90706 1.52741 1.52480 1.45804 1.48609 1.36313 1.38897 1.09998 1.22614 0.94718 0.95071 0.90875 1.23301 1.01922 0.93556 0.98445 1.19465 0.80304 0.87868 0.91605 1.86145 1.17129 1.42495 1.93663 1.21452 1.20378 1.02220 1.13264 0.91833 1.24976 0.94403 0.98110 0.95473 1.69678 1.21758 1.30283 1.31834 0.86461 0.78061 0.80843 0.81553 1.20036 1.21077 1.19985 1.22088 0.97201 0.97843 0.82555 1.20592 0.90784 0.98529 0.92625 0.91224 0.91556 0.91323 0.81950 0.78234 0.85923 0.86042 0.92050 0.91552 0.91288 0.89152 0.76743 0.92124 0.92044 0.90972 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.02 36.01 0.36 -0.21 16 2 C -0.19 -1.76 5.86 -104.85 -0.61 -2.37 16 3 C 0.17 1.94 10.82 -17.48 -0.19 1.75 16 4 N -0.50 -7.55 10.40 -12.34 -0.13 -7.68 16 5 C 0.32 5.10 7.97 -156.12 -1.24 3.86 16 6 C -0.22 -2.91 6.38 -105.18 -0.67 -3.58 16 7 C 0.08 0.95 12.29 -15.18 -0.19 0.76 16 8 N -0.22 -3.44 12.40 31.85 0.39 -3.05 16 9 N -0.37 -6.09 3.13 -61.60 -0.19 -6.29 16 10 C 0.13 1.99 5.89 -5.20 -0.03 1.96 16 11 C 0.51 10.04 7.92 -10.99 -0.09 9.95 16 12 O -0.54 -12.78 16.76 5.55 0.09 -12.69 16 13 N -0.60 -12.11 3.33 -170.51 -0.57 -12.68 16 14 C 0.09 1.57 6.68 -2.53 -0.02 1.56 16 15 C -0.13 -2.82 5.47 -24.59 -0.13 -2.95 16 16 C 0.25 5.95 0.84 -89.93 -0.08 5.87 16 17 O -0.59 -14.57 13.06 -35.23 -0.46 -15.03 16 18 C -0.53 -13.98 8.23 -34.44 -0.28 -14.27 16 19 H 0.06 1.68 7.58 -52.49 -0.40 1.28 16 20 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 21 N -0.90 -22.72 10.67 55.43 0.59 -22.13 16 22 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.12 2.86 6.23 -3.06 -0.02 2.85 16 27 C 0.00 0.03 9.83 -39.36 -0.39 -0.36 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 1.66 7.84 -51.93 -0.41 1.25 16 34 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.06 0.87 7.48 -51.93 -0.39 0.48 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 38 H 0.09 1.96 7.53 -51.93 -0.39 1.57 16 39 H 0.38 9.45 7.46 45.56 0.34 9.79 16 40 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 41 H 0.06 1.48 8.07 -51.93 -0.42 1.06 16 42 H 0.07 1.71 7.67 -51.93 -0.40 1.31 16 43 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -33.32 365.06 -8.45 -41.77 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.99 Total: 10.47 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -3.67 Total: 6.59 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.10 Total: -51.82 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.37 Total: -27.72 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.32 -8.45 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899207082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.901 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds