Wall clock time and date at job start Tue Mar 31 2020 05:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 C 1.53001 * 109.47099 * 119.99482 * 2 1 3 5 5 H 1.09000 * 109.47214 * 179.27598 * 4 2 1 6 6 N 1.46505 * 109.46871 * 59.27470 * 4 2 1 7 7 S 1.65607 * 119.99848 * 95.46487 * 6 4 2 8 8 O 1.42096 * 106.39889 * 180.71990 * 7 6 4 9 9 O 1.42100 * 106.39936 * 313.64243 * 7 6 4 10 10 N 1.65600 * 107.21557 * 67.17858 * 7 6 4 11 11 C 1.46505 * 119.99831 * 90.00107 * 10 7 6 12 12 C 1.46499 * 120.00318 * 269.99922 * 10 7 6 13 13 C 1.50693 * 109.46918 * 95.00157 * 12 10 7 14 14 H 1.08005 * 120.00599 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99975 * 180.02562 * 13 12 10 16 16 N 1.31518 * 120.00162 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99848 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47207 * 89.99967 * 17 15 13 19 19 H 1.48508 * 109.47317 * 209.99857 * 17 15 13 20 20 H 1.48501 * 109.47389 * 329.99934 * 17 15 13 21 21 C 1.50700 * 109.47133 * 299.27934 * 4 2 1 22 22 C 1.39868 * 126.04027 * 79.69255 * 21 4 2 23 23 N 1.30843 * 108.19810 * 179.81677 * 22 21 4 24 24 N 1.40081 * 108.20471 * 0.43522 * 23 22 21 25 25 C 1.46506 * 126.03448 * 179.73866 * 24 23 22 26 26 C 1.34946 * 107.92962 * 359.71834 * 24 23 22 27 27 H 1.08994 * 109.48037 * 300.00077 * 1 2 3 28 28 H 1.08999 * 109.47220 * 60.00355 * 1 2 3 29 29 H 1.09005 * 109.46865 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47253 * 239.99596 * 2 1 3 31 31 H 1.08997 * 109.47318 * 174.80288 * 3 2 1 32 32 H 1.09004 * 109.47068 * 294.80349 * 3 2 1 33 33 H 1.09001 * 109.47202 * 54.80218 * 3 2 1 34 34 H 0.96996 * 120.00331 * 275.19305 * 6 4 2 35 35 H 1.09005 * 109.46883 * 89.99885 * 11 10 7 36 36 H 1.08998 * 109.47295 * 209.99938 * 11 10 7 37 37 H 1.09004 * 109.46914 * 330.00136 * 11 10 7 38 38 H 1.08999 * 109.47305 * 215.00164 * 12 10 7 39 39 H 1.08999 * 109.47121 * 335.00072 * 12 10 7 40 40 H 0.96998 * 119.99988 * 180.02562 * 16 15 13 41 41 H 1.07992 * 125.90067 * 359.97438 * 22 21 4 42 42 H 1.08996 * 109.47415 * 269.97835 * 25 24 23 43 43 H 1.08999 * 109.47152 * 29.97676 * 25 24 23 44 44 H 1.09006 * 109.46964 * 149.97464 * 25 24 23 45 45 H 1.07997 * 126.12870 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 3.1299 -0.7324 1.2429 6 7 1.5373 -2.0973 1.2582 7 16 2.4752 -3.3251 0.6622 8 8 1.7101 -4.5151 0.7949 9 8 2.9926 -2.8682 -0.5799 10 7 3.7730 -3.4878 1.6779 11 6 3.6961 -4.3958 2.8250 12 6 4.9981 -2.7239 1.4293 13 6 4.9749 -1.4578 2.2461 14 1 4.1322 -1.2436 2.8867 15 6 6.0297 -0.5725 2.1757 16 7 6.0097 0.5323 2.8889 17 14 7.4870 -0.9423 1.0672 18 1 7.2408 -0.3709 -0.2812 19 1 8.7143 -0.3375 1.6446 20 1 7.6645 -2.4126 0.9568 21 6 1.5523 -0.0004 2.4796 22 6 0.2762 -0.1045 3.0428 23 7 0.2323 0.6646 4.1004 24 7 1.4777 1.2909 4.2381 25 6 1.8540 2.2392 5.2895 26 6 2.2698 0.8662 3.2315 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1259 1.4440 0.0931 32 1 1.7546 1.9288 -0.9329 33 1 1.6026 1.9825 0.8398 34 1 0.6569 -2.2897 1.6167 35 1 4.0368 -5.3875 2.5270 36 1 4.3295 -4.0204 3.6287 37 1 2.6647 -4.4553 3.1728 38 1 5.8636 -3.3230 1.7122 39 1 5.0608 -2.4722 0.3706 40 1 6.7515 1.1552 2.8391 41 1 -0.5323 -0.7161 2.6705 42 1 1.6208 3.2532 4.9648 43 1 1.2983 2.0122 6.1993 44 1 2.9229 2.1576 5.4868 45 1 3.2931 1.1642 3.0574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921848878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:06 Heat of formation + Delta-G solvation = 0.435456 kcal Electronic energy + Delta-G solvation = -29052.271666 eV Core-core repulsion = 25233.622385 eV Total energy + Delta-G solvation = -3818.649281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.151 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86523 -37.17686 -36.49669 -35.62464 -35.21463 -32.65879 -32.55972 -32.31695 -29.74152 -28.45623 -26.79695 -26.56610 -25.17514 -24.53570 -21.98162 -20.73247 -20.51880 -19.09831 -18.56578 -17.43718 -17.00804 -16.75209 -16.30947 -15.48778 -15.22492 -14.67645 -14.36914 -14.20740 -14.10408 -13.72959 -13.51763 -13.18087 -12.91480 -12.59806 -12.47353 -12.43494 -12.24155 -12.11099 -11.83590 -11.74202 -11.57307 -11.49111 -11.37365 -11.33609 -11.23971 -10.98727 -10.73385 -10.53214 -10.52056 -10.40269 -10.25279 -9.89384 -9.59755 -8.94867 -8.88651 -8.73273 -8.12682 -7.82902 -6.29533 -4.26680 1.30967 2.39547 2.95760 3.20141 3.22874 3.28085 3.33122 3.62824 4.19013 4.27580 4.86497 5.01710 5.06397 5.36834 5.37988 5.42777 5.48807 5.50991 5.55312 5.62388 5.66492 5.82500 6.02224 6.03174 6.06740 6.20335 6.22368 6.30229 6.30938 6.35586 6.40528 6.47336 6.55795 6.71251 6.80471 6.83914 6.97107 7.08148 7.15841 7.29343 7.45162 7.52178 7.63231 8.14083 8.31660 8.76989 9.34151 10.81864 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.007328 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.799739 B = 3819.813993 C = 5142.483328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.222 3.778 5 H 0.135 0.865 6 N -1.116 6.116 7 S 2.788 3.212 8 O -1.002 7.002 9 O -0.980 6.980 10 N -0.993 5.993 11 C 0.108 3.892 12 C 0.208 3.792 13 C -0.544 4.544 14 H 0.092 0.908 15 C 0.082 3.918 16 N -0.892 5.892 17 Si 0.866 3.134 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.230 4.230 22 C 0.052 3.948 23 N -0.316 5.316 24 N -0.380 5.380 25 C 0.106 3.894 26 C 0.093 3.907 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.404 0.596 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.044 0.956 40 H 0.266 0.734 41 H 0.172 0.828 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 1.561 0.895 7.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.198 4.198 4 C 0.115 3.885 5 H 0.152 0.848 6 N -0.873 5.873 7 S 2.796 3.204 8 O -0.987 6.987 9 O -0.964 6.964 10 N -0.834 5.834 11 C -0.039 4.039 12 C 0.084 3.916 13 C -0.583 4.583 14 H 0.110 0.890 15 C -0.122 4.122 16 N -0.530 5.530 17 Si 0.693 3.307 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.243 4.243 22 C -0.135 4.135 23 N -0.138 5.138 24 N -0.163 5.163 25 C -0.036 4.036 26 C -0.054 4.054 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.236 0.764 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.189 0.811 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.633 1.759 1.176 7.921 hybrid contribution 1.084 -0.159 -0.479 1.196 sum -6.549 1.600 0.697 6.778 Atomic orbital electron populations 1.21880 0.96026 1.01110 1.01249 1.21550 0.95719 0.96684 0.98766 1.21745 1.01842 0.95512 1.00717 1.19497 1.01280 0.78082 0.89670 0.84817 1.55972 1.29988 1.20609 1.80719 1.01659 0.72449 0.72371 0.73956 1.93546 1.71323 1.46191 1.87595 1.93565 1.79718 1.82067 1.41042 1.57407 1.29282 1.54537 1.42196 1.21213 1.01457 0.92031 0.89170 1.19651 0.82461 0.91785 0.97669 1.21585 1.07076 1.02721 1.26868 0.89030 1.24777 0.97699 0.94740 0.94966 1.69791 1.32409 1.10553 1.40254 0.86993 0.82634 0.79505 0.81602 1.19652 1.21186 1.18923 1.19913 0.94550 1.07045 1.02801 1.23525 0.97517 0.98705 0.93717 1.77210 1.01801 1.14047 1.20703 1.48353 1.09497 1.35731 1.22669 1.21769 1.01968 0.90691 0.89165 1.22860 0.98107 0.96312 0.88087 0.92320 0.93599 0.93086 0.90142 0.91902 0.93465 0.92903 0.76417 0.93816 0.90727 0.92584 0.94624 0.93772 0.92444 0.81130 0.91414 0.90033 0.89129 0.79015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.48 37.16 0.31 -1.67 16 2 C -0.11 -1.71 2.94 -90.62 -0.27 -1.98 16 3 C -0.14 -2.16 8.74 37.16 0.32 -1.83 16 4 C 0.22 3.86 2.15 -69.08 -0.15 3.71 16 5 H 0.13 2.74 4.61 -51.93 -0.24 2.50 16 6 N -1.12 -18.42 4.80 -5.88 -0.03 -18.45 16 7 S 2.79 53.24 6.03 -107.50 -0.65 52.60 16 8 O -1.00 -20.15 17.21 -57.17 -0.98 -21.14 16 9 O -0.98 -21.15 15.97 -57.17 -0.91 -22.06 16 10 N -0.99 -19.33 3.23 -123.05 -0.40 -19.73 16 11 C 0.11 1.80 10.31 59.85 0.62 2.42 16 12 C 0.21 4.54 4.37 -5.20 -0.02 4.52 16 13 C -0.54 -12.77 7.54 -34.44 -0.26 -13.03 16 14 H 0.09 2.25 7.02 -52.48 -0.37 1.89 16 15 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.89 -22.23 13.96 55.43 0.77 -21.46 16 17 Si 0.87 19.26 27.47 -169.99 -4.67 14.59 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 21 C -0.23 -3.88 3.67 -105.05 -0.39 -4.27 16 22 C 0.05 0.81 9.21 -17.36 -0.16 0.65 16 23 N -0.32 -5.30 12.58 30.62 0.39 -4.91 16 24 N -0.38 -6.12 4.01 -68.16 -0.27 -6.39 16 25 C 0.11 1.27 11.47 59.85 0.69 1.95 16 26 C 0.09 1.63 10.55 -17.22 -0.18 1.45 16 27 H 0.06 0.79 5.71 -51.93 -0.30 0.49 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.65 7.42 -51.93 -0.39 0.27 16 30 H 0.08 1.40 7.71 -51.93 -0.40 1.00 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.80 7.03 -51.93 -0.37 0.44 16 34 H 0.40 5.69 7.67 -34.47 -0.26 5.43 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.06 0.85 7.79 -51.93 -0.40 0.45 16 38 H 0.04 0.77 7.17 -51.93 -0.37 0.40 16 39 H 0.04 1.00 6.34 -51.93 -0.33 0.68 16 40 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 41 H 0.17 2.22 7.44 -52.49 -0.39 1.83 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.19 3.71 8.06 -52.49 -0.42 3.29 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -28.98 368.23 -7.57 -36.55 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.78 Total: 11.03 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 0.42 Total: -6.17 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: 0.46 Total: -70.94 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.90 Total: -43.20 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.67 Total: 14.59 kcal Atomic # 16 Polarization: 53.24 SS G_CDS: -0.65 Total: 52.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.98 -7.57 -36.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921848878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.988 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds