Wall clock time and date at job start Tue Mar 31 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.64257 * 2 1 4 4 C 1.54326 * 110.71787 * 236.66392 * 2 1 3 5 5 N 1.47022 * 107.27162 * 219.44389 * 4 2 1 6 6 C 1.34774 * 125.65065 * 178.95852 * 5 4 2 7 7 O 1.21605 * 119.99823 * 354.25346 * 6 5 4 8 8 C 1.47503 * 120.00211 * 174.24515 * 6 5 4 9 9 C 1.40151 * 119.95042 * 155.43407 * 8 6 5 10 10 C 1.36215 * 120.49842 * 180.02562 * 9 8 6 11 11 C 1.40020 * 120.08196 * 359.97438 * 10 9 8 12 12 N 1.35559 * 133.26898 * 180.02562 * 11 10 9 13 13 C 1.30920 * 109.71436 * 179.97438 * 12 11 10 14 14 O 1.35197 * 125.01319 * 179.97438 * 13 12 11 15 15 N 1.36250 * 109.97106 * 0.02562 * 13 12 11 16 16 H 0.96998 * 126.40106 * 180.02562 * 15 13 12 17 17 C 1.38560 * 107.20602 * 359.97438 * 15 13 12 18 18 C 1.38227 * 133.89407 * 180.33404 * 17 15 13 19 19 C 1.47422 * 108.70068 * 358.94430 * 5 4 2 20 20 C 1.54911 * 104.83690 * 24.12469 * 19 5 4 21 21 H 1.09000 * 111.02928 * 81.07670 * 20 19 5 22 22 N 1.46492 * 111.00545 * 204.91747 * 20 19 5 23 23 C 1.36940 * 120.00242 * 267.19406 * 22 20 19 24 24 H 1.07999 * 119.99713 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00013 * 180.02562 * 23 22 20 26 26 N 1.31628 * 119.99937 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00168 * 0.27824 * 25 23 22 28 28 H 1.48505 * 109.47309 * 269.72113 * 27 25 23 29 29 H 1.48498 * 109.47417 * 29.72450 * 27 25 23 30 30 H 1.48508 * 109.47213 * 149.72289 * 27 25 23 31 31 H 1.08998 * 109.46870 * 296.86346 * 1 2 3 32 32 H 1.09006 * 109.46807 * 56.85812 * 1 2 3 33 33 H 1.08994 * 109.47162 * 176.85513 * 1 2 3 34 34 H 1.09003 * 109.88454 * 338.86285 * 4 2 1 35 35 H 1.09004 * 109.88271 * 100.02441 * 4 2 1 36 36 H 1.08009 * 119.75300 * 359.97438 * 9 8 6 37 37 H 1.07999 * 119.95520 * 179.97438 * 10 9 8 38 38 H 0.96701 * 113.99729 * 90.03094 * 14 13 12 39 39 H 1.07996 * 120.20253 * 359.90262 * 18 17 15 40 40 H 1.09009 * 110.36460 * 265.28744 * 19 5 4 41 41 H 1.09003 * 110.36632 * 142.97029 * 19 5 4 42 42 H 0.96998 * 120.00047 * 87.20200 * 22 20 19 43 43 H 0.96994 * 119.99897 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0760 -0.7933 -1.2060 5 7 3.2445 -1.5520 -0.7365 6 6 3.9920 -2.3864 -1.4857 7 8 3.6584 -2.6430 -2.6266 8 6 5.2150 -2.9883 -0.9219 9 6 5.7036 -4.1955 -1.4399 10 6 6.8316 -4.7615 -0.9273 11 6 7.5138 -4.1382 0.1246 12 7 8.6329 -4.4528 0.8220 13 6 8.8648 -3.5323 1.7236 14 8 9.9026 -3.5391 2.5901 15 7 7.9053 -2.5670 1.6606 16 1 7.8471 -1.7759 2.2189 17 6 7.0288 -2.9257 0.6492 18 6 5.8865 -2.3523 0.1228 19 6 3.4632 -1.2487 0.6895 20 6 2.0789 -0.7934 1.2151 21 1 1.4448 -1.6508 1.4406 22 7 2.2215 0.0736 2.3873 23 6 2.1867 -0.4652 3.6458 24 1 2.0546 -1.5294 3.7741 25 6 2.3213 0.3564 4.7565 26 7 2.2884 -0.1616 5.9661 27 14 2.5420 2.1979 4.5348 28 1 3.9897 2.5154 4.4413 29 1 1.8587 2.6321 3.2899 30 1 1.9530 2.9106 5.6970 31 1 -0.3633 0.4644 0.9168 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3633 -1.0261 -0.0564 34 1 1.3129 -1.4785 -1.5751 35 1 2.3740 -0.1058 -1.9976 36 1 5.1813 -4.6811 -2.2510 37 1 7.2001 -5.6921 -1.3329 38 1 10.6942 -3.0929 2.2591 39 1 5.5140 -1.4198 0.5204 40 1 4.1931 -0.4466 0.7991 41 1 3.7960 -2.1407 1.2204 42 1 2.3404 1.0293 2.2721 43 1 2.3821 0.4126 6.7422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939221804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:27 Heat of formation + Delta-G solvation = 3.656989 kcal Electronic energy + Delta-G solvation = -28039.831659 eV Core-core repulsion = 24085.878123 eV Total energy + Delta-G solvation = -3953.953536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.30998 -41.39520 -39.38967 -38.81380 -37.27837 -36.01192 -34.60129 -33.92473 -32.94096 -31.24625 -30.37906 -29.54435 -27.42722 -25.84057 -24.62670 -23.82789 -23.04926 -22.52650 -21.62618 -20.92622 -20.13333 -19.52707 -18.73349 -18.37642 -17.85659 -17.50229 -17.05356 -16.43372 -16.24085 -15.95073 -15.47198 -15.27073 -15.24784 -14.97801 -14.76514 -14.54646 -14.30881 -14.19377 -13.91683 -13.50521 -13.19718 -13.03243 -12.99187 -12.94151 -12.69143 -12.65211 -12.18122 -12.13317 -11.94923 -11.90535 -11.80493 -11.44925 -11.26159 -11.14120 -10.91338 -9.80874 -9.55834 -9.38164 -9.23562 -8.01096 -5.37192 -0.56300 0.28039 1.17559 1.34272 1.40810 1.43405 1.51355 1.79422 1.94647 2.49520 2.63841 2.74591 3.22016 3.27959 3.37313 3.64730 3.71189 3.80527 3.93658 4.06431 4.08037 4.08849 4.20237 4.33729 4.39519 4.48169 4.54825 4.69487 4.81639 4.88088 4.89071 5.01415 5.03983 5.10370 5.15406 5.22982 5.28343 5.37666 5.46076 5.61281 5.78181 5.83621 6.21425 6.38891 6.55060 6.61438 7.00691 7.07604 7.79940 8.00410 9.19748 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009255 B = 0.004366 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.628383 B = 6412.375762 C = 8969.588599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 H 0.094 0.906 4 C 0.117 3.883 5 N -0.607 5.607 6 C 0.576 3.424 7 O -0.570 6.570 8 C -0.128 4.128 9 C -0.068 4.068 10 C -0.075 4.075 11 C 0.067 3.933 12 N -0.522 5.522 13 C 0.473 3.527 14 O -0.441 6.441 15 N -0.586 5.586 16 H 0.439 0.561 17 C 0.034 3.966 18 C -0.067 4.067 19 C 0.080 3.920 20 C 0.172 3.828 21 H 0.062 0.938 22 N -0.732 5.732 23 C -0.231 4.231 24 H 0.057 0.943 25 C -0.056 4.056 26 N -0.982 5.982 27 Si 0.950 3.050 28 H -0.277 1.277 29 H -0.246 1.246 30 H -0.303 1.303 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.437 0.563 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.370 0.630 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.450 -0.672 -14.478 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.125 4.125 3 H 0.112 0.888 4 C -0.005 4.005 5 N -0.339 5.339 6 C 0.367 3.633 7 O -0.451 6.451 8 C -0.132 4.132 9 C -0.089 4.089 10 C -0.095 4.095 11 C -0.053 4.053 12 N -0.255 5.255 13 C 0.169 3.831 14 O -0.247 6.247 15 N -0.211 5.211 16 H 0.281 0.719 17 C -0.076 4.076 18 C -0.088 4.088 19 C -0.045 4.045 20 C 0.062 3.938 21 H 0.080 0.920 22 N -0.374 5.374 23 C -0.362 4.362 24 H 0.075 0.925 25 C -0.248 4.248 26 N -0.632 5.632 27 Si 0.777 3.223 28 H -0.203 1.203 29 H -0.171 1.171 30 H -0.230 1.230 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.301 0.699 39 H 0.167 0.833 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.205 0.795 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.513 -2.032 -14.652 18.148 hybrid contribution 0.138 2.258 1.072 2.504 sum 10.651 0.226 -13.580 17.260 Atomic orbital electron populations 1.21666 0.92714 1.02337 1.02378 1.22498 0.97571 0.99608 0.92811 0.88790 1.22090 0.87139 0.94472 0.96781 1.48353 1.30080 1.43723 1.11726 1.17945 0.82945 0.77874 0.84523 1.90752 1.72728 1.62434 1.19225 1.19531 0.96539 0.98194 0.98963 1.20768 0.95285 0.93566 0.99298 1.20114 0.94139 1.00891 0.94336 1.19321 0.93688 0.93872 0.98405 1.70620 1.18432 1.27111 1.09297 1.20468 0.87722 0.85210 0.89750 1.84804 1.22602 1.79448 1.37852 1.43418 1.23009 1.23714 1.30986 0.71896 1.18516 0.96011 0.98938 0.94104 1.20705 0.92196 1.00990 0.94927 1.23425 1.00942 1.00720 0.79411 1.21500 0.92966 0.93464 0.85901 0.91981 1.42500 1.88072 1.05660 1.01194 1.18964 1.40792 0.93275 0.83168 0.92505 1.25444 1.02386 1.02399 0.94574 1.69890 1.58858 1.36319 0.98109 0.85494 0.78273 0.80798 0.77691 1.20261 1.17050 1.23043 0.92996 0.90429 0.92515 0.90872 0.90220 0.83194 0.82464 0.69940 0.83283 0.90126 0.91195 0.79533 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.16 71.98 0.66 -2.40 16 2 C -0.11 -2.62 3.20 -9.60 -0.03 -2.65 16 3 H 0.09 2.18 8.00 -2.39 -0.02 2.16 16 4 C 0.12 2.86 6.47 86.73 0.56 3.43 16 5 N -0.61 -16.83 3.33 -815.54 -2.71 -19.54 16 6 C 0.58 17.29 7.62 86.69 0.66 17.95 16 7 O -0.57 -19.81 16.92 -4.05 -0.07 -19.88 16 8 C -0.13 -3.44 5.67 -20.06 -0.11 -3.55 16 9 C -0.07 -1.65 9.50 22.26 0.21 -1.44 16 10 C -0.08 -1.75 10.03 22.23 0.22 -1.52 16 11 C 0.07 1.77 7.22 39.61 0.29 2.06 16 12 N -0.52 -13.84 11.29 -306.26 -3.46 -17.30 16 13 C 0.47 10.20 9.39 179.75 1.69 11.88 16 14 O -0.44 -6.60 13.62 -84.77 -1.15 -7.76 16 15 N -0.59 -12.06 6.27 -302.69 -1.90 -13.96 16 16 H 0.44 6.80 8.96 -92.71 -0.83 5.97 16 17 C 0.03 0.84 7.29 38.69 0.28 1.12 16 18 C -0.07 -1.70 8.08 22.58 0.18 -1.52 16 19 C 0.08 2.33 4.68 86.86 0.41 2.74 16 20 C 0.17 5.57 3.16 46.38 0.15 5.72 16 21 H 0.06 2.23 8.00 -2.39 -0.02 2.22 16 22 N -0.73 -29.24 5.05 -316.40 -1.60 -30.84 16 23 C -0.23 -11.86 10.44 84.03 0.88 -10.98 16 24 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 25 C -0.06 -3.05 5.50 84.86 0.47 -2.58 16 26 N -0.98 -59.51 13.97 21.65 0.30 -59.20 16 27 Si 0.95 41.28 27.74 68.60 1.90 43.19 16 28 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 29 H -0.25 -9.39 6.52 99.48 0.65 -8.74 16 30 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 34 H 0.07 1.78 7.77 -2.39 -0.02 1.76 16 35 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.15 3.31 7.82 -2.91 -0.02 3.28 16 37 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.44 1.21 9.06 -74.06 -0.67 0.54 16 39 H 0.15 3.57 4.60 -2.91 -0.01 3.55 16 40 H 0.08 2.19 6.81 -2.38 -0.02 2.17 16 41 H 0.07 2.18 6.84 -2.39 -0.02 2.17 16 42 H 0.37 14.00 5.62 -92.71 -0.52 13.48 16 43 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -73.28 356.71 -3.16 -76.44 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.98 Total: 30.60 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.51 Total: 18.25 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -9.36 Total: -140.84 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -1.22 Total: -27.64 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.90 Total: 43.19 kcal Total: -73.28 -3.16 -76.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939221804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.094 kcal (2) G-P(sol) polarization free energy of solvation -73.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds