Wall clock time and date at job start Tue Mar 31 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38483 * 120.82629 * 2 1 4 4 C 1.39258 * 119.19642 * 179.97438 * 3 2 1 5 5 C 1.48336 * 119.57301 * 180.02562 * 4 3 2 6 6 O 1.21493 * 120.00091 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99894 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99796 * 179.97438 * 7 5 4 9 9 H 1.09001 * 115.51583 * 9.58545 * 8 7 5 10 10 C 1.53001 * 117.40498 * 224.22861 * 8 7 5 11 11 H 1.08994 * 119.53932 * 4.10131 * 10 8 7 12 12 C 1.54390 * 118.11876 * 160.79620 * 10 8 7 13 13 N 1.48144 * 104.61715 * 87.19148 * 12 10 8 14 14 C 1.36940 * 127.83714 * 140.39272 * 13 12 10 15 15 H 1.08001 * 119.99564 * 189.26454 * 14 13 12 16 16 C 1.38803 * 120.00181 * 9.26504 * 14 13 12 17 17 N 1.31624 * 120.00158 * 14.34551 * 16 14 13 18 18 Si 1.86810 * 120.00048 * 194.34465 * 16 14 13 19 19 H 1.48497 * 109.46842 * 59.99860 * 18 16 14 20 20 H 1.48500 * 109.46820 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46804 * 299.99844 * 18 16 14 22 22 C 1.48144 * 104.32523 * 320.41269 * 13 12 10 23 23 C 1.52993 * 117.44043 * 154.99977 * 8 7 5 24 24 H 1.09002 * 119.54508 * 354.24720 * 23 8 7 25 25 N 1.32748 * 120.85638 * 0.27896 * 4 3 2 26 26 C 1.31385 * 121.79881 * 359.42759 * 25 4 3 27 27 C 1.39765 * 120.71841 * 0.56760 * 26 25 4 28 28 C 1.48011 * 120.46366 * 179.74176 * 27 26 25 29 29 N 1.34771 * 119.99819 * 6.17787 * 28 27 26 30 30 O 1.21523 * 119.99987 * 186.17389 * 28 27 26 31 31 H 1.08999 * 109.47186 * 96.54035 * 1 2 3 32 32 H 1.08999 * 109.47634 * 216.54415 * 1 2 3 33 33 H 1.09000 * 109.47110 * 336.54252 * 1 2 3 34 34 H 1.08005 * 120.40123 * 0.02562 * 3 2 1 35 35 H 0.97000 * 120.00270 * 359.97438 * 7 5 4 36 36 H 1.08997 * 110.40240 * 205.96919 * 12 10 8 37 37 H 1.08995 * 110.40856 * 328.40461 * 12 10 8 38 38 H 0.96996 * 119.99972 * 180.02562 * 17 16 14 39 39 H 1.09011 * 110.40459 * 280.80287 * 22 13 12 40 40 H 1.08999 * 110.41189 * 158.37436 * 22 13 12 41 41 H 1.07998 * 119.64119 * 180.29181 * 26 25 4 42 42 H 0.97004 * 120.00146 * 359.97438 * 29 28 27 43 43 H 0.97003 * 120.00164 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1892 0.0000 4 6 3.6086 1.1496 0.0005 5 6 4.3771 2.4184 0.0011 6 8 3.7919 3.4830 0.0016 7 7 5.7246 2.3900 0.0011 8 6 6.4836 3.6432 0.0011 9 1 5.8971 4.5473 0.1649 10 6 7.6809 3.7413 -0.9463 11 1 7.8928 2.9204 -1.6313 12 6 8.2118 5.1460 -1.3050 13 7 9.1813 5.4647 -0.2312 14 6 10.3905 6.0961 -0.3514 15 1 11.0665 6.1329 0.4901 16 6 10.7473 6.6889 -1.5548 17 7 9.8362 6.8965 -2.4818 18 14 12.5205 7.1921 -1.8586 19 1 13.3958 5.9955 -1.7746 20 1 12.6384 7.7986 -3.2089 21 1 12.9364 8.1827 -0.8334 22 6 8.5463 4.9448 1.0022 23 6 7.9014 3.6087 0.5750 24 1 8.2684 2.6970 1.0465 25 7 4.2568 -0.0089 -0.0045 26 6 3.6204 -1.1583 0.0010 27 6 2.2234 -1.2009 0.0006 28 6 1.5122 -2.4990 0.0010 29 7 2.2060 -3.6474 0.1275 30 8 0.3027 -2.5291 -0.1126 31 1 -0.3633 -0.1171 -1.0210 32 1 -0.3634 -0.8256 0.6119 33 1 -0.3633 0.9427 0.4091 34 1 1.6967 2.1359 0.0004 35 1 6.1919 1.5400 0.0011 36 1 8.7104 5.1277 -2.2740 37 1 7.3974 5.8704 -1.3091 38 1 10.0856 7.3104 -3.3228 39 1 7.7841 5.6380 1.3584 40 1 9.2972 4.7749 1.7738 41 1 4.1828 -2.0803 0.0014 42 1 3.1716 -3.6233 0.2178 43 1 1.7400 -4.4981 0.1281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961849089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:55 Heat of formation + Delta-G solvation = 29.936360 kcal Electronic energy + Delta-G solvation = -26697.206831 eV Core-core repulsion = 22744.392854 eV Total energy + Delta-G solvation = -3952.813977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38730 -39.97244 -39.08666 -38.14611 -34.91104 -34.54836 -34.07170 -32.64418 -31.76278 -30.22335 -28.38339 -27.16628 -26.24343 -25.21381 -23.40564 -22.29010 -21.47741 -20.53672 -20.18894 -19.31190 -18.47382 -18.10446 -17.52752 -16.87047 -16.67670 -15.95019 -15.73176 -15.59395 -15.08662 -15.00018 -14.69041 -14.28175 -13.88965 -13.69912 -13.32800 -13.18902 -13.16935 -13.08246 -12.77333 -12.63280 -12.24037 -11.61659 -11.47905 -11.03891 -10.80741 -10.70502 -10.46784 -10.37648 -10.32155 -10.20546 -10.19366 -10.00640 -9.83679 -9.73798 -9.70801 -9.20702 -8.73288 -8.36499 -6.92963 -5.79303 -3.10254 -0.18328 0.68142 2.02920 2.71484 2.81774 2.89851 3.39411 3.44367 3.45227 3.45773 3.61605 4.08431 4.19074 4.27941 4.30428 4.46815 4.47936 4.70560 5.00369 5.13332 5.23535 5.27005 5.34447 5.35067 5.39229 5.54091 5.62613 5.81076 5.85202 5.88238 6.00994 6.09190 6.20319 6.21736 6.49708 6.65866 6.68715 6.74085 6.86379 7.12320 7.35687 7.51602 7.53940 7.63693 7.72072 8.10310 8.19556 9.10335 9.74085 10.48769 11.34379 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.001982 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.838360 B =14125.272814 C =14478.232711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.018 3.982 3 C -0.122 4.122 4 C 0.115 3.885 5 C 0.568 3.432 6 O -0.524 6.524 7 N -0.673 5.673 8 C 0.090 3.910 9 H 0.134 0.866 10 C -0.175 4.175 11 H 0.103 0.897 12 C 0.180 3.820 13 N -0.594 5.594 14 C -0.227 4.227 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.914 5.914 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.156 3.844 23 C -0.181 4.181 24 H 0.105 0.895 25 N -0.467 5.467 26 C 0.140 3.860 27 C -0.186 4.186 28 C 0.570 3.430 29 N -0.848 5.848 30 O -0.528 6.528 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.159 0.841 35 H 0.410 0.590 36 H 0.098 0.902 37 H 0.025 0.975 38 H 0.255 0.745 39 H 0.028 0.972 40 H 0.053 0.947 41 H 0.165 0.835 42 H 0.402 0.598 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.911 -21.831 5.709 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 C -0.142 4.142 4 C -0.022 4.022 5 C 0.352 3.648 6 O -0.400 6.400 7 N -0.321 5.321 8 C -0.015 4.015 9 H 0.151 0.849 10 C -0.196 4.196 11 H 0.121 0.879 12 C 0.054 3.946 13 N -0.317 5.317 14 C -0.355 4.355 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.561 5.561 18 Si 0.742 3.258 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.029 3.971 23 C -0.202 4.202 24 H 0.123 0.877 25 N -0.178 5.178 26 C -0.022 4.022 27 C -0.192 4.192 28 C 0.355 3.645 29 N -0.413 5.413 30 O -0.405 6.405 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.176 0.824 35 H 0.245 0.755 36 H 0.116 0.884 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.182 0.818 42 H 0.232 0.768 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -15.998 -20.645 5.454 26.682 hybrid contribution 0.722 -0.792 -0.190 1.088 sum -15.276 -21.437 5.264 26.844 Atomic orbital electron populations 1.21129 0.88390 1.04056 1.04388 1.20523 0.97912 0.90798 0.89823 1.22111 0.93665 0.99758 0.98714 1.21453 0.91814 0.92301 0.96596 1.17791 0.82424 0.87136 0.77447 1.90814 1.69560 1.29938 1.49671 1.45213 1.05310 1.09746 1.71805 1.21947 0.87442 0.87472 1.04651 0.84892 1.24736 0.99169 1.03100 0.92628 0.87853 1.21156 0.91230 0.86882 0.95315 1.45220 1.18763 1.66798 1.00922 1.18959 0.90647 1.27901 0.97965 0.90331 1.24810 0.98135 0.99947 0.97523 1.69900 1.31272 1.47176 1.07709 0.86205 0.84337 0.78125 0.77170 1.21148 1.21575 1.21022 1.21124 0.94864 0.90285 0.90800 1.24299 0.96094 1.01304 0.98496 0.87661 1.67570 1.40564 0.97738 1.11936 1.22892 0.90157 0.96285 0.92859 1.20938 0.95246 0.94321 1.08676 1.18009 0.86750 0.83919 0.75775 1.43745 1.11894 1.08617 1.77025 1.90797 1.13589 1.87109 1.49048 0.89582 0.88263 0.91133 0.82379 0.75455 0.88372 0.95683 0.93467 0.95477 0.92845 0.81785 0.76836 0.76017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.83 36.00 0.32 -0.66 16 2 C 0.02 0.16 5.95 -103.94 -0.62 -0.46 16 3 C -0.12 -1.26 9.30 -39.11 -0.36 -1.62 16 4 C 0.12 1.36 6.75 -82.94 -0.56 0.80 16 5 C 0.57 8.31 7.82 -12.10 -0.09 8.22 16 6 O -0.52 -9.24 15.88 5.37 0.09 -9.16 16 7 N -0.67 -9.53 5.55 -54.59 -0.30 -9.84 16 8 C 0.09 1.53 5.98 -67.93 -0.41 1.12 16 9 H 0.13 2.50 7.40 -51.93 -0.38 2.11 16 10 C -0.17 -3.33 7.06 -89.22 -0.63 -3.96 16 11 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 12 C 0.18 4.35 5.82 -2.41 -0.01 4.33 16 13 N -0.59 -15.14 3.39 -168.86 -0.57 -15.72 16 14 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 15 H 0.08 2.09 7.87 -52.49 -0.41 1.67 16 16 C -0.01 -0.20 5.37 -17.43 -0.09 -0.30 16 17 N -0.91 -26.74 10.77 55.49 0.60 -26.14 16 18 Si 0.91 21.83 29.58 -169.99 -5.03 16.80 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.16 3.24 7.04 -2.41 -0.02 3.22 16 23 C -0.18 -3.17 7.06 -89.22 -0.63 -3.80 16 24 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 25 N -0.47 -4.67 9.52 -9.48 -0.09 -4.76 16 26 C 0.14 1.00 10.69 -17.17 -0.18 0.82 16 27 C -0.19 -1.48 5.90 -104.72 -0.62 -2.10 16 28 C 0.57 4.24 8.00 -12.26 -0.10 4.14 16 29 N -0.85 -2.80 8.83 30.56 0.27 -2.53 16 30 O -0.53 -5.55 14.33 5.35 0.08 -5.48 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.87 5.96 -51.93 -0.31 0.56 16 33 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 34 H 0.16 1.57 7.63 -52.48 -0.40 1.17 16 35 H 0.41 5.00 8.15 -40.82 -0.33 4.67 16 36 H 0.10 2.64 6.25 -51.93 -0.32 2.32 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.17 0.50 6.46 -52.49 -0.34 0.16 16 42 H 0.40 0.28 6.93 -40.82 -0.28 0.00 16 43 H 0.41 0.87 8.93 -40.82 -0.36 0.50 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -34.39 361.86 -8.92 -43.31 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.24 Total: 4.74 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -4.16 Total: 3.33 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.10 Total: -58.99 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.16 Total: -14.64 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.39 -8.92 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961849089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.243 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds