Wall clock time and date at job start Tue Mar 31 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47661 * 2 1 4 4 N 1.46507 * 109.47031 * 239.99780 * 2 1 3 5 5 C 1.34778 * 119.99443 * 85.00160 * 4 2 1 6 6 O 1.21595 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.47524 * 119.99663 * 179.97438 * 5 4 2 8 8 C 1.39538 * 120.24716 * 0.03171 * 7 5 4 9 9 C 1.38197 * 120.26829 * 179.97438 * 8 7 5 10 10 C 1.37973 * 120.70702 * 0.02562 * 9 8 7 11 11 C 1.39607 * 120.11265 * 0.02562 * 10 9 8 12 12 N 1.35978 * 133.39068 * 180.31381 * 11 10 9 13 13 C 1.30737 * 109.51407 * 180.02562 * 12 11 10 14 14 O 1.35279 * 125.05518 * 179.89160 * 13 12 11 15 15 N 1.36477 * 109.88608 * 359.63256 * 13 12 11 16 16 H 0.97003 * 126.32347 * 180.21057 * 15 13 12 17 17 C 1.37852 * 107.35248 * 0.21983 * 15 13 12 18 18 C 1.53001 * 109.46920 * 120.00318 * 2 1 3 19 19 C 1.53941 * 113.74249 * 282.19240 * 18 2 1 20 20 N 1.47804 * 86.03986 * 222.08238 * 19 18 2 21 21 C 1.36944 * 134.46028 * 204.63990 * 20 19 18 22 22 H 1.07997 * 119.99705 * 182.58875 * 21 20 19 23 23 C 1.38808 * 119.99846 * 2.59178 * 21 20 19 24 24 N 1.31621 * 120.00035 * 353.41043 * 23 21 20 25 25 Si 1.86798 * 120.00156 * 173.41366 * 23 21 20 26 26 H 1.48499 * 109.47155 * 94.97062 * 25 23 21 27 27 H 1.48492 * 109.47035 * 214.97097 * 25 23 21 28 28 H 1.48501 * 109.46662 * 334.96930 * 25 23 21 29 29 C 1.47588 * 91.04960 * 24.55240 * 20 19 18 30 30 H 1.08998 * 109.46690 * 64.48352 * 1 2 3 31 31 H 1.08990 * 109.47420 * 184.48506 * 1 2 3 32 32 H 1.09001 * 109.46935 * 304.49185 * 1 2 3 33 33 H 0.96992 * 120.00512 * 265.00152 * 4 2 1 34 34 H 1.08001 * 119.86410 * 359.96801 * 8 7 5 35 35 H 1.08001 * 119.65118 * 179.97438 * 9 8 7 36 36 H 1.07993 * 119.94427 * 179.97438 * 10 9 8 37 37 H 0.96707 * 113.99700 * 269.69405 * 14 13 12 38 38 H 1.09003 * 112.94322 * 53.78628 * 18 2 1 39 39 H 1.09002 * 113.77159 * 336.35176 * 19 18 2 40 40 H 1.09002 * 113.76730 * 107.74401 * 19 18 2 41 41 H 0.96994 * 120.00017 * 179.97438 * 24 23 21 42 42 H 1.09005 * 113.76419 * 221.15146 * 29 20 19 43 43 H 1.08994 * 113.87555 * 89.76558 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8583 1.1617 -2.4116 7 6 2.6393 -0.7136 -3.5615 8 6 2.9725 -2.0674 -3.5048 9 6 3.4332 -2.7193 -4.6329 10 6 3.5713 -2.0455 -5.8289 11 6 3.2456 -0.6904 -5.9111 12 7 3.2706 0.2166 -6.9239 13 6 2.8621 1.3769 -6.4813 14 8 2.7655 2.5023 -7.2257 15 7 2.5420 1.2824 -5.1580 16 1 2.2111 1.9991 -4.5942 17 6 2.7760 -0.0196 -4.7703 18 6 2.0400 -0.7213 1.2492 19 6 1.9660 0.1296 2.5299 20 7 3.3032 -0.4148 2.8462 21 6 4.0103 -0.6101 4.0026 22 1 5.0166 -0.9999 3.9608 23 6 3.4336 -0.3072 5.2283 24 7 2.2602 0.2874 5.2746 25 14 4.3226 -0.7434 6.8122 26 1 5.0968 0.4323 7.2852 27 1 3.3301 -1.1311 7.8463 28 1 5.2479 -1.8781 6.5640 29 6 3.5693 -0.6653 1.4163 30 1 -0.3633 0.4427 -0.9274 31 1 -0.3634 -1.0244 0.0804 32 1 -0.3633 0.5820 0.8470 33 1 2.2490 -1.6318 -1.1527 34 1 2.8700 -2.6079 -2.5754 35 1 3.6886 -3.7672 -4.5776 36 1 3.9328 -2.5669 -6.7028 37 1 3.5669 3.0435 -7.2261 38 1 1.6224 -1.7219 1.3624 39 1 1.9615 1.2037 2.3441 40 1 1.1864 -0.1866 3.2230 41 1 1.8571 0.4987 6.1311 42 1 4.0676 -1.6152 1.2221 43 1 4.0371 0.1735 0.9011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969851448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:37 Heat of formation + Delta-G solvation = 54.897237 kcal Electronic energy + Delta-G solvation = -27436.133570 eV Core-core repulsion = 23484.401978 eV Total energy + Delta-G solvation = -3951.731592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52899 -39.99356 -38.49697 -37.94795 -36.73045 -34.92252 -33.46924 -32.26317 -31.21796 -29.80223 -29.16931 -27.51755 -25.05519 -24.42887 -23.75888 -22.80956 -22.41324 -21.28196 -20.48619 -19.43989 -19.05343 -17.94987 -17.86636 -16.87210 -16.74623 -16.18084 -15.95169 -15.18633 -14.93953 -14.81091 -14.56553 -14.29790 -14.15714 -13.98837 -13.64762 -13.20855 -12.93271 -12.39472 -12.37037 -12.16617 -12.04304 -11.92925 -11.63412 -11.42332 -11.29551 -11.04574 -10.93411 -10.70460 -10.57162 -10.41194 -10.16535 -9.86070 -9.73940 -9.48218 -9.02160 -8.77273 -8.72217 -8.48636 -6.91681 -5.80345 -3.11376 0.21279 1.11104 1.92144 2.25687 2.87742 3.11107 3.36984 3.41718 3.42153 3.44342 3.60439 4.20895 4.42397 4.52357 4.55988 4.78323 4.90851 5.00299 5.08244 5.13766 5.32642 5.36060 5.49042 5.56297 5.58302 5.76711 5.81983 5.93399 5.98263 6.01485 6.04915 6.20484 6.30941 6.35600 6.40071 6.41907 6.51415 6.57950 6.73609 7.18071 7.26309 7.32859 7.37130 7.49743 7.52729 7.95117 8.14814 9.01737 9.68267 10.57033 11.37345 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.002382 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.208830 B =11752.028886 C =12152.697870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.708 5.708 5 C 0.560 3.440 6 O -0.554 6.554 7 C -0.124 4.124 8 C -0.059 4.059 9 C -0.133 4.133 10 C -0.037 4.037 11 C 0.045 3.955 12 N -0.485 5.485 13 C 0.451 3.549 14 O -0.442 6.442 15 N -0.583 5.583 16 H 0.435 0.565 17 C 0.111 3.889 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.125 3.875 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.399 0.601 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.412 0.588 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.254 0.746 42 H 0.041 0.959 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 -3.347 -22.888 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.357 5.357 5 C 0.347 3.653 6 O -0.434 6.434 7 C -0.131 4.131 8 C -0.080 4.080 9 C -0.153 4.153 10 C -0.057 4.057 11 C -0.073 4.073 12 N -0.217 5.217 13 C 0.146 3.854 14 O -0.244 6.244 15 N -0.207 5.207 16 H 0.277 0.723 17 C -0.003 4.003 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.235 0.765 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.270 0.730 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.730 -2.785 -23.572 23.747 hybrid contribution 0.635 0.450 2.015 2.160 sum -0.095 -2.336 -21.557 21.683 Atomic orbital electron populations 1.22106 0.95256 1.02047 1.02156 1.21171 0.93898 0.97491 0.82848 0.89346 1.46034 1.66083 1.14099 1.09529 1.18094 0.77625 0.86431 0.83105 1.90695 1.51739 1.15743 1.85216 1.18958 1.08449 0.94303 0.91355 1.21218 0.95640 0.91828 0.99276 1.20869 1.02035 1.00647 0.91790 1.20466 0.96587 0.90099 0.98524 1.18810 1.05235 0.94921 0.88320 1.70732 1.23191 0.98527 1.29240 1.20393 0.97182 0.88288 0.79491 1.84829 1.42201 1.31466 1.65863 1.43526 1.55611 1.11181 1.10403 0.72264 1.18329 1.01832 0.84661 0.95449 1.23861 0.97659 1.00781 0.94432 1.22226 0.89679 0.93909 0.89167 1.46040 1.16059 1.72059 0.99637 1.19027 0.96915 1.36695 0.82535 0.90293 1.24782 0.97307 1.00845 0.97468 1.69819 1.17214 1.45501 1.24250 0.86119 0.78402 0.78044 0.83305 1.21692 1.21562 1.20561 1.22533 0.93018 0.97713 0.86828 0.92892 0.92597 0.91031 0.76546 0.84378 0.84213 0.84541 0.72974 0.89204 0.95429 0.90801 0.93617 0.94031 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.43 37.16 0.35 -1.76 16 2 C 0.15 2.19 2.29 -67.93 -0.16 2.04 16 3 H 0.09 1.50 7.49 -51.93 -0.39 1.11 16 4 N -0.71 -8.62 4.90 -54.85 -0.27 -8.89 16 5 C 0.56 7.48 7.73 -12.47 -0.10 7.39 16 6 O -0.55 -8.90 14.93 5.28 0.08 -8.82 16 7 C -0.12 -1.42 5.88 -104.95 -0.62 -2.04 16 8 C -0.06 -0.50 9.53 -39.11 -0.37 -0.87 16 9 C -0.13 -0.97 9.99 -39.69 -0.40 -1.36 16 10 C -0.04 -0.33 10.09 -39.17 -0.40 -0.72 16 11 C 0.05 0.53 7.22 -84.69 -0.61 -0.08 16 12 N -0.49 -6.03 11.32 -12.24 -0.14 -6.17 16 13 C 0.45 4.89 9.40 -88.85 -0.83 4.05 16 14 O -0.44 -3.45 13.63 -17.53 -0.24 -3.68 16 15 N -0.58 -6.60 6.03 -11.70 -0.07 -6.67 16 16 H 0.43 4.72 7.71 -40.82 -0.31 4.40 16 17 C 0.11 1.35 6.88 -83.66 -0.58 0.77 16 18 C -0.15 -2.51 3.35 -89.70 -0.30 -2.81 16 19 C 0.18 3.98 7.02 -2.85 -0.02 3.96 16 20 N -0.61 -15.39 3.70 -177.71 -0.66 -16.05 16 21 C -0.22 -6.24 10.69 -15.06 -0.16 -6.40 16 22 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -27.04 11.43 55.49 0.63 -26.40 16 25 Si 0.91 21.94 29.56 -169.99 -5.02 16.92 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.13 2.44 8.38 -2.96 -0.02 2.42 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.40 3.83 6.63 -40.82 -0.27 3.56 16 34 H 0.14 0.82 6.39 -52.49 -0.34 0.48 16 35 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.41 0.93 9.06 45.56 0.41 1.34 16 38 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 40 H 0.07 1.84 7.20 -51.93 -0.37 1.46 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -35.68 363.78 -9.13 -44.81 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.61 Total: 5.21 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -4.31 Total: 4.27 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.50 Total: -64.18 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.16 Total: -12.51 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.68 -9.13 -44.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969851448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.705 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds