Wall clock time and date at job start Tue Mar 31 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36260 * 126.39589 * 2 1 4 4 O 1.35207 * 125.01318 * 359.95161 * 3 2 1 5 5 N 1.30917 * 109.97176 * 179.97438 * 3 2 1 6 6 C 1.35565 * 109.71454 * 359.97438 * 5 3 2 7 7 C 1.40010 * 133.26551 * 179.97438 * 6 5 3 8 8 C 1.36208 * 120.08496 * 179.97438 * 7 6 5 9 9 C 1.40151 * 120.49247 * 0.02562 * 8 7 6 10 10 C 1.47515 * 119.94972 * 179.97438 * 9 8 7 11 11 O 1.21605 * 119.99558 * 352.03776 * 10 9 8 12 12 N 1.34769 * 120.00219 * 172.04368 * 10 9 8 13 13 C 1.47023 * 125.64892 * 5.45119 * 12 10 9 14 14 C 1.54327 * 107.27155 * 181.02450 * 13 12 10 15 15 C 1.55157 * 102.94210 * 22.19502 * 14 13 12 16 16 H 1.08993 * 111.00775 * 82.57189 * 15 14 13 17 17 N 1.46499 * 111.00170 * 206.42491 * 15 14 13 18 18 C 1.36944 * 119.99677 * 204.99715 * 17 15 14 19 19 H 1.07997 * 119.99803 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99804 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00072 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99974 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47021 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47057 * 119.99911 * 22 20 18 25 25 H 1.48501 * 109.47204 * 240.00130 * 22 20 18 26 26 C 1.47421 * 125.65035 * 185.14559 * 12 10 9 27 27 C 1.39534 * 120.10407 * 0.24827 * 9 8 7 28 28 C 1.38210 * 119.59114 * 359.49313 * 27 9 8 29 29 H 1.09004 * 109.47170 * 270.02918 * 1 2 3 30 30 H 1.09004 * 109.47023 * 30.02690 * 1 2 3 31 31 H 1.08999 * 109.47234 * 150.02711 * 1 2 3 32 32 H 0.96705 * 113.99451 * 90.00262 * 4 3 2 33 33 H 1.07996 * 119.95918 * 0.03036 * 7 6 5 34 34 H 1.07998 * 119.75586 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.88215 * 300.44281 * 13 12 10 36 36 H 1.09000 * 109.88124 * 61.45428 * 13 12 10 37 37 H 1.08997 * 110.71984 * 140.55539 * 14 13 12 38 38 H 1.09000 * 110.72155 * 263.64980 * 14 13 12 39 39 H 0.96998 * 120.00554 * 24.99777 * 17 15 14 40 40 H 0.96994 * 120.00087 * 180.02562 * 21 20 18 41 41 H 1.08994 * 110.36884 * 274.74588 * 26 12 10 42 42 H 1.09003 * 110.36927 * 37.06758 * 26 12 10 43 43 H 1.08003 * 120.20118 * 179.72922 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2735 1.0968 0.0000 4 8 1.8424 2.3783 -0.0009 5 7 3.5292 0.7266 0.0006 6 6 3.6070 -0.6268 0.0015 7 6 4.6800 -1.5263 0.0019 8 6 4.4460 -2.8681 0.0035 9 6 3.1341 -3.3613 0.0041 10 6 2.8945 -4.8168 0.0052 11 8 3.8249 -5.5862 -0.1403 12 7 1.6446 -5.2939 0.1674 13 6 0.4205 -4.4828 0.2397 14 6 -0.7601 -5.4532 0.4546 15 6 -0.0738 -6.7074 1.0571 16 1 0.0794 -6.5916 2.1300 17 7 -0.8452 -7.9185 0.7668 18 6 -0.7375 -9.0115 1.5849 19 1 -0.0842 -8.9804 2.4442 20 6 -1.4681 -10.1593 1.3095 21 7 -2.2647 -10.1969 0.2624 22 14 -1.3217 -11.6498 2.4257 23 1 -0.3682 -11.3533 3.5250 24 1 -2.6534 -11.9721 2.9983 25 1 -0.8265 -12.8092 1.6410 26 6 1.2776 -6.7160 0.2953 27 6 2.0543 -2.4776 -0.0021 28 6 2.2871 -1.1153 0.0018 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 1.7165 2.7515 0.8823 33 1 5.6944 -1.1557 0.0019 34 1 5.2776 -3.5572 0.0042 35 1 0.4856 -3.7872 1.0763 36 1 0.2856 -3.9315 -0.6909 37 1 -1.4812 -5.0337 1.1561 38 1 -1.2410 -5.6916 -0.4941 39 1 -1.4323 -7.9464 -0.0049 40 1 -2.7754 -10.9988 0.0702 41 1 1.1575 -7.1669 -0.6897 42 1 2.0328 -7.2526 0.8696 43 1 1.0427 -2.8560 -0.0060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970890930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:55 Heat of formation + Delta-G solvation = 54.719889 kcal Electronic energy + Delta-G solvation = -27581.617197 eV Core-core repulsion = 23629.877914 eV Total energy + Delta-G solvation = -3951.739283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.56407 -40.19041 -38.40684 -37.46237 -36.45909 -34.80829 -34.20687 -31.88160 -30.83327 -29.85195 -29.49146 -27.76017 -27.17798 -24.80922 -23.65996 -22.88199 -22.41779 -21.27315 -20.27146 -19.80093 -18.92140 -18.00931 -17.47724 -17.08898 -16.75523 -16.35194 -16.04168 -15.20199 -15.06785 -14.68693 -14.41697 -14.32824 -14.15267 -13.69221 -13.56612 -13.37170 -13.23702 -13.17811 -12.84575 -12.54666 -12.33765 -12.23281 -11.97150 -11.55610 -11.28029 -11.16104 -10.87122 -10.82124 -10.77617 -10.41026 -10.23992 -10.05299 -9.83662 -9.78324 -9.07472 -8.70924 -8.46748 -8.35429 -7.13988 -5.89139 -3.20171 0.29534 1.16019 1.77090 2.06764 2.95230 3.08738 3.23733 3.38030 3.44823 3.46349 3.72802 3.98237 4.22540 4.44737 4.52718 4.57976 4.64636 4.77088 4.91811 4.97562 5.01204 5.03633 5.12132 5.16987 5.30934 5.37978 5.58520 5.64933 5.75707 5.83062 5.88792 6.03114 6.06054 6.14760 6.17149 6.17912 6.27564 6.43218 6.49477 6.56838 6.80003 7.04461 7.37806 7.61671 7.66526 8.26684 8.29322 9.40584 9.92657 10.27355 11.32850 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.002508 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.082232 B =11163.527512 C =12134.683106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.492 5.492 3 C 0.453 3.547 4 O -0.442 6.442 5 N -0.490 5.490 6 C 0.078 3.922 7 C -0.075 4.075 8 C -0.068 4.068 9 C -0.106 4.106 10 C 0.570 3.430 11 O -0.537 6.537 12 N -0.606 5.606 13 C 0.094 3.906 14 C -0.145 4.145 15 C 0.173 3.827 16 H 0.070 0.930 17 N -0.711 5.711 18 C -0.249 4.249 19 H 0.074 0.926 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.081 3.919 27 C -0.105 4.105 28 C 0.042 3.958 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.410 0.590 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 25.099 0.433 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.194 5.194 3 C 0.151 3.849 4 O -0.243 6.243 5 N -0.221 5.221 6 C -0.042 4.042 7 C -0.095 4.095 8 C -0.089 4.089 9 C -0.111 4.111 10 C 0.359 3.641 11 O -0.415 6.415 12 N -0.340 5.340 13 C -0.029 4.029 14 C -0.184 4.184 15 C 0.060 3.940 16 H 0.088 0.912 17 N -0.350 5.350 18 C -0.380 4.380 19 H 0.092 0.908 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.044 4.044 27 C -0.126 4.126 28 C -0.065 4.065 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.268 0.732 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.520 25.152 -0.113 25.751 hybrid contribution -1.080 -0.964 0.683 1.601 sum 4.440 24.188 0.570 24.599 Atomic orbital electron populations 1.22071 0.75632 1.05318 1.03892 1.45586 1.07565 1.05100 1.61187 1.20391 0.84113 0.81230 0.99205 1.84785 1.86460 1.18495 1.34601 1.70629 1.15414 1.11752 1.24295 1.18982 0.92491 0.89148 1.03582 1.19930 0.97585 0.90919 1.01027 1.20746 0.96201 0.94716 0.97283 1.19701 0.93618 0.92579 1.05165 1.17740 0.81729 0.87340 0.77308 1.90795 1.41867 1.58653 1.50221 1.48408 1.05057 1.09637 1.70863 1.22471 0.85377 0.94741 1.00306 1.23035 0.96190 0.96599 1.02582 1.21355 0.88960 0.86679 0.96986 0.91245 1.42315 1.50124 1.10146 1.32411 1.19312 1.21677 0.91251 1.05753 0.90816 1.24778 0.99215 0.98342 0.98151 1.69664 1.30958 1.28728 1.28345 0.86097 0.77257 0.82909 0.79785 1.20390 1.21759 1.21697 1.23534 0.99975 0.79097 1.01758 1.21618 1.02061 0.88711 1.00171 1.18517 0.90744 0.88751 1.08466 0.90265 0.88969 0.89183 0.73170 0.84468 0.83754 0.90906 0.91158 0.90058 0.90248 0.77836 0.93347 0.91229 0.90794 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 11.12 59.85 0.67 0.99 16 2 N -0.49 -4.29 3.23 -123.40 -0.40 -4.69 16 3 C 0.45 4.39 8.98 -88.91 -0.80 3.60 16 4 O -0.44 -2.85 13.51 -17.32 -0.23 -3.08 16 5 N -0.49 -6.08 11.29 -12.18 -0.14 -6.22 16 6 C 0.08 0.96 7.22 -84.61 -0.61 0.35 16 7 C -0.07 -0.85 10.03 -39.65 -0.40 -1.25 16 8 C -0.07 -0.83 9.51 -39.59 -0.38 -1.21 16 9 C -0.11 -1.39 5.88 -104.91 -0.62 -2.01 16 10 C 0.57 9.17 7.79 -12.48 -0.10 9.08 16 11 O -0.54 -10.51 16.65 5.27 0.09 -10.42 16 12 N -0.61 -9.21 3.32 -176.22 -0.59 -9.80 16 13 C 0.09 1.07 4.87 -3.06 -0.01 1.05 16 14 C -0.15 -1.93 6.59 -24.89 -0.16 -2.10 16 15 C 0.17 3.11 3.73 -65.66 -0.24 2.87 16 16 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 17 N -0.71 -16.50 5.24 -51.24 -0.27 -16.77 16 18 C -0.25 -6.57 9.96 -15.06 -0.15 -6.72 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 22 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.08 1.47 6.59 -2.41 -0.02 1.45 16 27 C -0.11 -1.15 8.57 -39.11 -0.34 -1.49 16 28 C 0.04 0.47 6.87 -83.89 -0.58 -0.11 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.29 8.12 -51.93 -0.42 -0.13 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.41 0.41 9.06 45.56 0.41 0.82 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.14 1.69 7.64 -52.49 -0.40 1.29 16 35 H 0.07 0.69 6.66 -51.93 -0.35 0.34 16 36 H 0.07 0.66 6.78 -51.93 -0.35 0.31 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.08 8.01 -51.93 -0.42 0.67 16 39 H 0.39 9.51 7.77 -40.82 -0.32 9.19 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 43 H 0.17 1.49 2.75 -58.44 -0.16 1.33 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -35.30 360.12 -8.74 -44.04 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.50 Total: 6.84 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -3.83 Total: 4.19 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.67 Total: -63.70 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.15 Total: -13.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.30 -8.74 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970890930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.757 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds