Wall clock time and date at job start Tue Mar 31 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36943 * 119.99771 * 2 1 4 4 H 1.07999 * 120.00235 * 204.90499 * 3 2 1 5 5 C 1.38817 * 119.99937 * 24.90269 * 3 2 1 6 6 N 1.31622 * 119.99726 * 5.54963 * 5 3 2 7 7 Si 1.86794 * 119.99844 * 185.54339 * 5 3 2 8 8 H 1.48498 * 109.47262 * 90.00521 * 7 5 3 9 9 H 1.48503 * 109.46819 * 209.99920 * 7 5 3 10 10 H 1.48495 * 109.47393 * 330.00006 * 7 5 3 11 11 C 1.46497 * 120.00481 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.78349 * 183.23234 * 11 2 1 13 13 C 1.55154 * 110.71894 * 59.99965 * 11 2 1 14 14 C 1.54916 * 101.61778 * 206.15422 * 13 11 2 15 15 N 1.47422 * 104.82891 * 36.98890 * 14 13 11 16 16 C 1.34783 * 125.64567 * 155.90576 * 15 14 13 17 17 O 1.21585 * 119.99757 * 354.25474 * 16 15 14 18 18 C 1.47527 * 119.99687 * 174.24845 * 16 15 14 19 19 C 1.39532 * 120.24455 * 7.06396 * 18 16 15 20 20 C 1.38206 * 120.26334 * 179.97438 * 19 18 16 21 21 C 1.37969 * 120.70364 * 0.02562 * 20 19 18 22 22 C 1.39599 * 120.11769 * 0.02810 * 21 20 19 23 23 N 1.35992 * 133.39507 * 179.97438 * 22 21 20 24 24 C 1.30739 * 109.51126 * 180.02562 * 23 22 21 25 25 O 1.35278 * 125.05269 * 180.02562 * 24 23 22 26 26 N 1.36471 * 109.88805 * 359.97438 * 24 23 22 27 27 H 0.97007 * 126.32119 * 180.02562 * 26 24 23 28 28 C 1.37852 * 107.35472 * 359.70812 * 26 24 23 29 29 C 1.47018 * 108.70652 * 335.87206 * 15 14 13 30 30 H 1.09004 * 109.47276 * 275.05158 * 1 2 3 31 31 H 1.08992 * 109.47488 * 35.06051 * 1 2 3 32 32 H 1.09007 * 109.46870 * 155.06361 * 1 2 3 33 33 H 0.96997 * 119.99899 * 180.02562 * 6 5 3 34 34 H 1.08999 * 111.00573 * 88.06355 * 13 11 2 35 35 H 1.08997 * 111.00694 * 324.24775 * 13 11 2 36 36 H 1.09002 * 110.36696 * 155.82846 * 14 13 11 37 37 H 1.08999 * 110.36423 * 278.04173 * 14 13 11 38 38 H 1.08006 * 119.86963 * 359.97438 * 19 18 16 39 39 H 1.07996 * 119.64705 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.93758 * 180.02562 * 21 20 19 41 41 H 0.96699 * 113.99869 * 90.02529 * 25 24 23 42 42 H 1.09000 * 109.88217 * 120.47190 * 29 15 14 43 43 H 1.08998 * 109.88754 * 241.64593 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1543 1.2296 -0.3939 5 6 1.5523 2.3323 0.5062 6 7 0.3724 2.2587 1.0850 7 14 2.4229 3.9789 0.3661 8 1 2.0337 4.6379 -0.9065 9 1 2.0348 4.8429 1.5098 10 1 3.8923 3.7650 0.3836 11 6 2.1975 -1.2686 -0.0006 12 1 3.2720 -1.0948 0.0570 13 6 1.8437 -2.1063 -1.2577 14 6 2.1166 -3.5475 -0.7593 15 7 1.6775 -3.5495 0.6480 16 6 1.2940 -4.6346 1.3496 17 8 1.1918 -5.7119 0.7953 18 6 0.9986 -4.5150 2.7900 19 6 0.9707 -3.2603 3.3999 20 6 0.6935 -3.1478 4.7492 21 6 0.4412 -4.2691 5.5125 22 6 0.4644 -5.5356 4.9257 23 7 0.2619 -6.7916 5.4061 24 6 0.3990 -7.6574 4.4361 25 8 0.2640 -8.9972 4.5657 26 7 0.6975 -7.0084 3.2733 27 1 0.8482 -7.4200 2.4079 28 6 0.7383 -5.6594 3.5540 29 6 1.7279 -2.1722 1.1597 30 1 -0.3634 0.0905 1.0237 31 1 -0.3634 0.8411 -0.5903 32 1 -0.3633 -0.9319 -0.4333 33 1 -0.0452 3.0597 1.4384 34 1 2.4959 -1.8517 -2.0931 35 1 0.7959 -1.9789 -1.5299 36 1 1.5364 -4.2655 -1.3388 37 1 3.1799 -3.7772 -0.8270 38 1 1.1666 -2.3736 2.8153 39 1 0.6749 -2.1718 5.2112 40 1 0.2255 -4.1668 6.5658 41 1 -0.6366 -9.3177 4.4195 42 1 0.7364 -1.8633 1.4911 43 1 2.4340 -2.1098 1.9876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971701334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:59 Heat of formation + Delta-G solvation = 60.310711 kcal Electronic energy + Delta-G solvation = -28308.951560 eV Core-core repulsion = 24357.454714 eV Total energy + Delta-G solvation = -3951.496846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.35168 -40.09300 -38.22630 -37.51264 -36.54796 -34.84261 -33.31431 -31.86017 -30.87644 -29.56010 -29.00294 -27.88603 -26.16239 -24.75360 -23.19780 -22.74778 -22.24543 -21.68769 -19.83234 -19.58687 -18.99345 -17.95443 -17.27956 -17.09421 -16.37246 -16.04708 -15.93187 -15.31251 -15.11816 -14.54538 -14.32511 -14.28063 -13.96291 -13.49057 -13.40074 -12.86337 -12.83861 -12.65631 -12.42310 -12.09426 -12.00247 -11.71670 -11.64767 -11.41452 -10.93476 -10.87142 -10.79581 -10.55154 -10.52942 -10.40288 -10.28854 -10.03630 -9.95958 -9.70202 -8.66893 -8.63465 -8.39539 -8.25814 -6.90718 -5.85789 -3.36792 0.45378 1.34121 2.08561 2.42838 2.99991 3.08144 3.30733 3.37809 3.38495 3.58564 3.81182 4.29952 4.38823 4.61319 4.88004 4.97177 5.04889 5.11124 5.16423 5.26191 5.28475 5.42185 5.50483 5.60784 5.66141 5.79113 5.85977 5.89564 6.03395 6.05685 6.22802 6.24769 6.36894 6.42383 6.43145 6.54115 6.66112 6.67793 6.75461 7.28351 7.40185 7.54634 7.61727 7.63213 7.69900 8.17248 8.26421 9.09686 9.69810 10.18891 11.17865 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.003103 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.785819 B = 9022.799484 C =10123.391042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.586 5.586 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.172 3.828 12 H 0.082 0.918 13 C -0.154 4.154 14 C 0.109 3.891 15 N -0.601 5.601 16 C 0.575 3.425 17 O -0.566 6.566 18 C -0.127 4.127 19 C -0.090 4.090 20 C -0.131 4.131 21 C -0.038 4.038 22 C 0.041 3.959 23 N -0.483 5.483 24 C 0.444 3.556 25 O -0.443 6.443 26 N -0.585 5.585 27 H 0.432 0.568 28 C 0.111 3.889 29 C 0.063 3.937 30 H 0.033 0.967 31 H 0.048 0.952 32 H -0.002 1.002 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.179 0.821 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.409 0.591 42 H 0.087 0.913 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -14.598 3.814 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.307 5.307 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.191 4.191 6 N -0.549 5.549 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.061 3.939 12 H 0.100 0.900 13 C -0.195 4.195 14 C -0.014 4.014 15 N -0.333 5.333 16 C 0.366 3.634 17 O -0.448 6.448 18 C -0.133 4.133 19 C -0.108 4.108 20 C -0.151 4.151 21 C -0.058 4.058 22 C -0.077 4.077 23 N -0.215 5.215 24 C 0.139 3.861 25 O -0.244 6.244 26 N -0.209 5.209 27 H 0.274 0.726 28 C -0.002 4.002 29 C -0.061 4.061 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.017 0.983 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.195 0.805 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.267 0.733 42 H 0.105 0.895 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.316 -15.323 4.655 16.017 hybrid contribution 0.075 0.617 -1.281 1.423 sum -0.241 -14.706 3.374 15.090 Atomic orbital electron populations 1.20855 0.82317 0.95702 0.99622 1.43890 1.01895 0.99798 1.85086 1.19216 0.99516 0.85731 1.34736 0.91199 1.25130 0.97237 0.98825 0.97864 1.70040 1.15827 1.27861 1.41211 0.86213 0.79129 0.83664 0.77240 1.21436 1.21592 1.20395 1.21421 0.96633 0.85792 0.90008 0.89982 1.23409 1.02918 0.92938 1.00208 1.22248 0.99285 0.98716 0.81142 1.48325 1.64076 1.07577 1.13311 1.17802 0.76819 0.82993 0.85816 1.90653 1.55403 1.27267 1.71490 1.18774 1.10245 0.91476 0.92823 1.22985 0.94004 0.97801 0.96059 1.21025 1.01659 0.98696 0.93728 1.20510 0.96465 0.88526 1.00271 1.18760 1.06818 0.92273 0.89856 1.70702 1.24008 0.98579 1.28188 1.20346 0.99286 0.84722 0.81757 1.84823 1.35812 1.12598 1.91179 1.43451 1.59495 1.05656 1.12293 0.72584 1.18329 1.03086 0.83184 0.95627 1.23487 1.02270 0.80410 0.99927 0.94913 0.93369 0.98312 0.93522 0.90261 0.90530 0.90913 0.91575 0.80471 0.84049 0.84667 0.73267 0.89492 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.53 7.48 59.84 0.45 3.98 16 2 N -0.59 -12.91 2.94 -171.36 -0.50 -13.42 16 3 C -0.26 -6.50 9.61 -15.05 -0.14 -6.65 16 4 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 5 C 0.01 0.22 5.24 -17.43 -0.09 0.13 16 6 N -0.91 -24.18 10.45 55.49 0.58 -23.61 16 7 Si 0.91 20.37 29.56 -169.99 -5.02 15.35 16 8 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 11 C 0.17 3.02 3.43 -66.07 -0.23 2.79 16 12 H 0.08 1.42 7.95 -51.93 -0.41 1.01 16 13 C -0.15 -2.34 6.61 -24.58 -0.16 -2.51 16 14 C 0.11 1.54 6.94 -2.53 -0.02 1.52 16 15 N -0.60 -9.30 3.33 -176.20 -0.59 -9.89 16 16 C 0.57 9.40 7.80 -12.47 -0.10 9.30 16 17 O -0.57 -10.08 15.54 5.29 0.08 -9.99 16 18 C -0.13 -1.92 5.88 -104.95 -0.62 -2.53 16 19 C -0.09 -1.23 8.61 -39.11 -0.34 -1.56 16 20 C -0.13 -1.57 9.99 -39.69 -0.40 -1.96 16 21 C -0.04 -0.47 10.09 -39.17 -0.40 -0.86 16 22 C 0.04 0.59 7.22 -84.69 -0.61 -0.02 16 23 N -0.48 -7.00 11.32 -12.24 -0.14 -7.14 16 24 C 0.44 5.55 9.40 -88.86 -0.83 4.71 16 25 O -0.44 -4.00 13.63 -17.53 -0.24 -4.24 16 26 N -0.58 -7.68 6.03 -11.70 -0.07 -7.75 16 27 H 0.43 5.29 7.74 -40.82 -0.32 4.97 16 28 C 0.11 1.64 6.87 -83.66 -0.58 1.07 16 29 C 0.06 1.00 4.49 -3.04 -0.01 0.98 16 30 H 0.03 0.78 7.25 -51.93 -0.38 0.40 16 31 H 0.05 1.18 7.26 -51.93 -0.38 0.80 16 32 H 0.00 -0.03 6.46 -51.93 -0.34 -0.37 16 33 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.25 6.45 -51.93 -0.34 0.92 16 36 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.18 2.48 2.73 -58.28 -0.16 2.32 16 39 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.41 1.38 9.06 45.56 0.41 1.79 16 42 H 0.09 1.47 5.44 -51.93 -0.28 1.19 16 43 H 0.08 1.12 6.74 -51.93 -0.35 0.77 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -31.12 347.39 -8.92 -40.04 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.18 Total: 7.02 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -4.07 Total: 8.38 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.72 Total: -61.79 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.16 Total: -14.23 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.12 -8.92 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971701334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.349 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds