Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36933 * 120.00347 * 2 1 4 4 H 1.08000 * 120.00294 * 204.01008 * 3 2 1 5 5 C 1.38814 * 119.99895 * 24.00695 * 3 2 1 6 6 N 1.31617 * 120.00045 * 9.80051 * 5 3 2 7 7 Si 1.86799 * 120.00084 * 189.79863 * 5 3 2 8 8 H 1.48499 * 109.47140 * 60.00074 * 7 5 3 9 9 H 1.48499 * 109.47106 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47207 * 300.00323 * 7 5 3 11 11 C 1.46502 * 119.99800 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88543 * 183.88248 * 11 2 1 13 13 C 1.55157 * 111.00613 * 60.00426 * 11 2 1 14 14 C 1.54322 * 102.94603 * 206.42462 * 13 11 2 15 15 N 1.47033 * 107.26798 * 22.18918 * 14 13 11 16 16 C 1.34770 * 125.64529 * 181.02231 * 15 14 13 17 17 O 1.21511 * 119.99728 * 184.91083 * 16 15 14 18 18 C 1.48169 * 120.00317 * 4.91784 * 16 15 14 19 19 C 1.40172 * 120.99825 * 315.30767 * 18 16 15 20 20 C 1.38014 * 118.70927 * 179.97438 * 19 18 16 21 21 N 1.31667 * 121.43077 * 359.97438 * 20 19 18 22 22 C 1.32954 * 122.25608 * 0.02562 * 21 20 19 23 23 C 1.38877 * 121.00167 * 135.02351 * 18 16 15 24 24 C 1.50964 * 133.29234 * 0.64194 * 23 18 16 25 25 C 1.51439 * 103.92275 * 179.55847 * 24 23 18 26 26 O 1.21275 * 126.45667 * 179.78868 * 25 24 23 27 27 N 1.34351 * 107.08893 * 359.79003 * 25 24 23 28 28 C 1.47418 * 108.70355 * 1.28812 * 15 14 13 29 29 H 1.08994 * 109.47384 * 274.84775 * 1 2 3 30 30 H 1.09003 * 109.46785 * 34.84788 * 1 2 3 31 31 H 1.08999 * 109.47337 * 154.84106 * 1 2 3 32 32 H 0.97004 * 120.00098 * 179.97438 * 6 5 3 33 33 H 1.09000 * 110.72327 * 88.05789 * 13 11 2 34 34 H 1.09005 * 110.87076 * 324.85885 * 13 11 2 35 35 H 1.08996 * 109.88374 * 262.77427 * 14 13 11 36 36 H 1.08999 * 110.01493 * 141.67631 * 14 13 11 37 37 H 1.07995 * 120.64929 * 359.94825 * 19 18 16 38 38 H 1.07997 * 119.29120 * 179.97438 * 20 19 18 39 39 H 1.08996 * 110.71485 * 60.85827 * 24 23 18 40 40 H 1.09006 * 110.48146 * 298.13506 * 24 23 18 41 41 H 0.97003 * 123.78503 * 180.02562 * 27 25 24 42 42 H 1.09002 * 110.36570 * 94.48314 * 28 15 14 43 43 H 1.09005 * 110.37034 * 216.80516 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1596 1.2263 -0.3806 5 6 1.5457 2.3360 0.4891 6 7 0.3971 2.2560 1.1267 7 14 2.3632 3.9974 0.2424 8 1 2.5164 4.2628 -1.2106 9 1 1.5230 5.0582 0.8540 10 1 3.7005 3.9919 0.8883 11 6 2.1974 -1.2688 0.0006 12 1 3.2717 -1.0973 0.0694 13 6 1.8483 -2.1131 -1.2535 14 6 2.1062 -3.5589 -0.7796 15 7 2.0263 -3.5578 0.6885 16 6 2.2128 -4.6281 1.4860 17 8 2.0347 -4.5314 2.6841 18 6 2.6353 -5.9226 0.9020 19 6 2.0352 -6.4189 -0.2636 20 6 2.4657 -7.6296 -0.7671 21 7 3.4205 -8.3181 -0.1772 22 6 4.0220 -7.8926 0.9296 23 6 3.6416 -6.6781 1.4895 24 6 4.4964 -6.4862 2.7190 25 6 5.3743 -7.7198 2.7486 26 8 6.2234 -7.9804 3.5744 27 7 5.0354 -8.4711 1.6876 28 6 1.7019 -2.1936 1.1433 29 1 -0.3634 0.0868 1.0239 30 1 -0.3633 0.8434 -0.5872 31 1 -0.3634 -0.9301 -0.4369 32 1 -0.0248 3.0597 1.4688 33 1 2.5043 -1.8571 -2.0856 34 1 0.8033 -1.9795 -1.5330 35 1 3.0979 -3.8816 -1.0966 36 1 1.3499 -4.2270 -1.1915 37 1 1.2510 -5.8648 -0.7578 38 1 2.0096 -8.0210 -1.6644 39 1 3.8775 -6.4356 3.6148 40 1 5.1044 -5.5864 2.6242 41 1 5.4506 -9.3214 1.4741 42 1 0.6262 -2.0857 1.2822 43 1 2.2295 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971864310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = 23.983732 kcal Electronic energy + Delta-G solvation = -27923.294132 eV Core-core repulsion = 23970.222030 eV Total energy + Delta-G solvation = -3953.072102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15879 -40.12827 -39.12287 -37.55029 -36.45746 -34.94421 -33.61985 -31.83870 -30.92627 -29.91594 -28.89092 -27.95706 -26.14473 -25.12296 -23.41153 -22.81603 -22.39057 -21.73548 -20.11914 -19.43090 -18.26180 -17.66895 -17.13951 -17.04727 -16.60325 -16.15707 -15.96181 -15.44961 -15.12153 -14.64870 -14.45731 -14.33690 -14.07694 -13.78827 -13.53904 -13.39449 -13.14812 -12.78531 -12.77716 -12.53791 -12.46446 -11.95573 -11.59460 -11.42181 -10.94723 -10.88458 -10.68595 -10.59365 -10.55373 -10.45293 -10.36892 -10.11248 -9.94942 -9.91801 -9.69056 -8.76013 -8.67913 -8.50887 -6.87916 -5.83113 -3.32877 0.42203 0.51473 1.94669 2.18892 2.61015 2.89235 3.33349 3.37153 3.39123 3.39474 3.51551 3.94964 4.11202 4.22777 4.39432 4.40209 4.70303 4.86566 4.92844 5.06002 5.12249 5.18544 5.25919 5.37925 5.41021 5.52253 5.55775 5.70914 5.79178 5.85409 5.88937 6.05993 6.18259 6.25579 6.32301 6.35607 6.50186 6.68258 6.76538 7.27205 7.27740 7.52700 7.54272 7.64266 7.71363 8.04219 8.28627 9.11787 9.72941 10.21520 11.20999 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020218 B = 0.002701 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.576845 B =10365.689214 C =11045.219018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.584 5.584 3 C -0.265 4.265 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.099 3.901 15 N -0.602 5.602 16 C 0.566 3.434 17 O -0.527 6.527 18 C -0.019 4.019 19 C -0.169 4.169 20 C 0.141 3.859 21 N -0.494 5.494 22 C 0.351 3.649 23 C -0.142 4.142 24 C -0.114 4.114 25 C 0.540 3.460 26 O -0.491 6.491 27 N -0.645 5.645 28 C 0.087 3.913 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.001 0.999 32 H 0.255 0.745 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.419 0.581 42 H 0.073 0.927 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 -19.589 -5.931 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.304 5.304 3 C -0.394 4.394 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.548 5.548 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.195 4.195 14 C -0.024 4.024 15 N -0.335 5.335 16 C 0.352 3.648 17 O -0.404 6.404 18 C -0.031 4.031 19 C -0.190 4.190 20 C -0.016 4.016 21 N -0.209 5.209 22 C 0.119 3.881 23 C -0.148 4.148 24 C -0.154 4.154 25 C 0.327 3.673 26 O -0.363 6.363 27 N -0.292 5.292 28 C -0.037 4.037 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.171 0.829 38 H 0.190 0.810 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.258 0.742 42 H 0.091 0.909 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.972 -20.216 -4.940 21.187 hybrid contribution 0.160 1.174 -0.004 1.185 sum 4.132 -19.042 -4.944 20.103 Atomic orbital electron populations 1.20835 0.82326 0.95640 0.99678 1.43837 1.01922 0.99772 1.84861 1.19166 0.99147 0.85422 1.35654 0.91240 1.25107 0.97568 0.98814 0.97685 1.70040 1.17866 1.27795 1.39123 0.86285 0.78671 0.83404 0.77840 1.20947 1.21559 1.20808 1.21511 0.96462 0.85750 0.90032 0.90268 1.23255 1.03064 0.92432 1.00734 1.22272 1.00972 0.99432 0.79773 1.48458 1.67804 1.09568 1.07643 1.17751 0.78541 0.82519 0.85965 1.90816 1.51620 1.83735 1.14204 1.19544 0.94270 0.94887 0.94353 1.22441 1.02442 0.98382 0.95748 1.22451 0.90804 0.90348 0.98002 1.66607 1.10276 1.35848 1.08199 1.18205 0.89821 0.89655 0.90445 1.20337 0.99393 0.95982 0.99094 1.21116 0.97489 0.98414 0.98335 1.20527 0.82556 0.84971 0.79205 1.90850 1.32459 1.74808 1.38200 1.43509 1.35431 1.24473 1.25775 1.23252 1.01364 0.78542 1.00501 0.94900 0.93612 0.98102 0.93462 0.90416 0.90329 0.91601 0.91569 0.82869 0.81003 0.84370 0.85133 0.74209 0.90901 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.61 7.54 59.84 0.45 4.06 16 2 N -0.58 -13.37 2.96 -170.90 -0.51 -13.88 16 3 C -0.26 -6.80 9.61 -15.06 -0.14 -6.95 16 4 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 5 C 0.01 0.20 5.16 -17.43 -0.09 0.11 16 6 N -0.90 -25.21 10.60 55.49 0.59 -24.62 16 7 Si 0.91 20.94 29.56 -169.99 -5.03 15.92 16 8 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 C 0.17 3.15 3.55 -65.66 -0.23 2.91 16 12 H 0.08 1.46 7.96 -51.93 -0.41 1.05 16 13 C -0.15 -2.14 6.49 -24.90 -0.16 -2.30 16 14 C 0.10 1.10 5.60 -3.06 -0.02 1.08 16 15 N -0.60 -8.57 3.32 -171.37 -0.57 -9.14 16 16 C 0.57 8.21 7.42 -12.18 -0.09 8.12 16 17 O -0.53 -9.44 17.06 5.36 0.09 -9.35 16 18 C -0.02 -0.22 5.47 -104.86 -0.57 -0.79 16 19 C -0.17 -1.41 8.68 -38.94 -0.34 -1.75 16 20 C 0.14 1.05 11.14 -17.70 -0.20 0.85 16 21 N -0.49 -4.71 10.36 -12.37 -0.13 -4.84 16 22 C 0.35 3.53 8.27 -154.44 -1.28 2.25 16 23 C -0.14 -1.55 6.15 -103.96 -0.64 -2.19 16 24 C -0.11 -1.18 6.53 -28.54 -0.19 -1.37 16 25 C 0.54 5.80 8.71 -10.81 -0.09 5.70 16 26 O -0.49 -6.72 18.03 5.56 0.10 -6.62 16 27 N -0.64 -5.84 5.85 -11.21 -0.07 -5.91 16 28 C 0.09 1.53 6.44 -2.41 -0.02 1.51 16 29 H 0.03 0.82 7.35 -51.93 -0.38 0.44 16 30 H 0.05 1.13 7.30 -51.93 -0.38 0.75 16 31 H 0.00 0.01 6.38 -51.93 -0.33 -0.32 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.13 6.47 -51.93 -0.34 0.80 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.57 5.92 -51.93 -0.31 0.27 16 37 H 0.15 1.01 5.77 -52.49 -0.30 0.70 16 38 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.42 2.93 8.96 -40.82 -0.37 2.57 16 42 H 0.07 1.37 6.97 -51.93 -0.36 1.01 16 43 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -32.11 353.77 -9.05 -41.16 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.26 Total: 0.68 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: -3.61 Total: 11.25 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.68 Total: -58.38 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.19 Total: -15.96 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.11 -9.05 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971864310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.146 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds