Wall clock time and date at job start Tue Mar 31 2020 04:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48494 * 109.47550 * 270.00078 * 3 2 1 5 5 H 1.48501 * 109.47411 * 30.00280 * 3 2 1 6 6 H 1.48504 * 109.46856 * 149.99810 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.53001 * 118.12276 * 88.01620 * 11 10 9 14 14 H 1.09006 * 117.43974 * 14.47199 * 13 11 10 15 15 C 1.52997 * 117.44056 * 159.21160 * 13 11 10 16 16 N 1.46504 * 109.47187 * 185.00213 * 15 13 11 17 17 C 1.34771 * 120.00008 * 179.97438 * 16 15 13 18 18 O 1.21516 * 120.00572 * 0.02562 * 17 16 15 19 19 C 1.48171 * 119.99928 * 179.97438 * 17 16 15 20 20 C 1.39246 * 119.65980 * 179.72814 * 19 17 16 21 21 C 1.39751 * 118.90502 * 179.77976 * 20 19 17 22 22 C 1.48148 * 120.89011 * 180.24249 * 21 20 19 23 23 N 1.34776 * 120.00079 * 180.25491 * 22 21 20 24 24 O 1.21519 * 119.99787 * 0.25053 * 22 21 20 25 25 C 1.39801 * 118.22119 * 0.48872 * 21 20 19 26 26 C 1.38497 * 119.19111 * 359.75141 * 25 21 20 27 27 N 1.31470 * 121.03572 * 0.02562 * 26 25 21 28 28 C 1.52992 * 60.55790 * 266.86339 * 13 11 10 29 29 H 1.09007 * 119.54057 * 248.23383 * 28 13 11 30 30 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 31 31 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 32 32 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 33 33 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 34 34 H 1.09005 * 109.47458 * 304.99585 * 15 13 11 35 35 H 1.08998 * 109.47489 * 65.00160 * 15 13 11 36 36 H 0.97000 * 119.99779 * 0.02562 * 16 15 13 37 37 H 1.08004 * 120.54598 * 0.02562 * 20 19 17 38 38 H 0.96998 * 119.99730 * 359.97438 * 23 22 21 39 39 H 0.97004 * 119.99826 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.40754 * 179.73475 * 25 21 20 41 41 H 1.08002 * 119.48482 * 179.97438 * 26 25 21 42 42 H 1.09002 * 110.40706 * 100.80382 * 30 9 7 43 43 H 1.09001 * 110.41178 * 338.37370 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 -0.2957 -5.1961 -0.3693 14 1 -0.3521 -5.2958 0.7147 15 6 -0.9479 -6.3251 -1.1698 16 7 -0.8786 -7.5711 -0.4024 17 6 -1.3945 -8.7067 -0.9131 18 8 -1.9166 -8.6973 -2.0103 19 6 -1.3239 -9.9670 -0.1371 20 6 -1.8642 -11.1349 -0.6691 21 6 -1.7848 -12.3156 0.0743 22 6 -2.3402 -13.5843 -0.4516 23 7 -2.2584 -14.7115 0.2827 24 8 -2.8696 -13.6087 -1.5452 25 6 -1.1719 -12.2664 1.3298 26 6 -0.6646 -11.0615 1.7871 27 7 -0.7520 -9.9697 1.0600 28 6 0.9649 -4.5550 -0.9529 29 1 1.3965 -4.9560 -1.8700 30 6 1.8845 -3.7600 -0.0016 31 1 -0.4850 0.8400 0.0004 32 1 -0.7146 -1.7148 -0.3630 33 1 -0.5197 -2.8483 1.0094 34 1 -1.9910 -6.0764 -1.3653 35 1 -0.4211 -6.4513 -2.1157 36 1 -0.4622 -7.5786 0.4737 37 1 -2.3333 -11.1292 -1.6419 38 1 -1.8355 -14.6921 1.1554 39 1 -2.6224 -15.5421 -0.0616 40 1 -1.0951 -13.1570 1.9360 41 1 -0.1905 -11.0180 2.7565 42 1 1.8513 -4.1847 1.0018 43 1 2.9071 -3.7537 -0.3789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979141944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:37 Heat of formation + Delta-G solvation = 31.742178 kcal Electronic energy + Delta-G solvation = -26269.750448 eV Core-core repulsion = 22317.014777 eV Total energy + Delta-G solvation = -3952.735671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31099 -39.88422 -39.06995 -38.44343 -35.01756 -34.63346 -33.38350 -32.83897 -31.95735 -30.69404 -27.63665 -26.99121 -25.78914 -25.14656 -23.96231 -22.26267 -21.10084 -20.70725 -19.92362 -19.16261 -18.90541 -17.84236 -17.48559 -16.84669 -16.40799 -16.27306 -15.74725 -15.46921 -15.27507 -15.24799 -14.74850 -14.45534 -14.25080 -14.17497 -13.80703 -13.50060 -13.02626 -12.71302 -12.58585 -12.54280 -11.81158 -11.23995 -11.00217 -10.92332 -10.84420 -10.63630 -10.59471 -10.56473 -10.37349 -10.26673 -10.11989 -10.02241 -9.80108 -9.66078 -9.32620 -9.11613 -8.87829 -8.77414 -6.90578 -5.65021 -3.09206 -0.08266 0.32597 2.09068 2.63691 2.64815 2.95369 3.40267 3.43888 3.44880 3.46954 3.69247 3.96026 4.13642 4.20250 4.30654 4.41438 4.47991 4.75694 4.94601 5.07575 5.19649 5.31899 5.37581 5.41524 5.48366 5.55964 5.78330 5.88668 5.91467 5.95041 5.98587 6.10498 6.31408 6.32871 6.58351 6.59903 6.66707 6.75389 6.94813 7.08850 7.34250 7.46494 7.55114 7.55548 7.81752 8.02868 8.29960 9.13750 9.77976 10.49464 11.38264 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.038969 B = 0.001790 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.347488 B =15638.166757 C =16038.108306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.214 4.214 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.154 3.846 11 C -0.153 4.153 12 H 0.103 0.897 13 C -0.155 4.155 14 H 0.103 0.897 15 C 0.152 3.848 16 N -0.699 5.699 17 C 0.566 3.434 18 O -0.530 6.530 19 C 0.085 3.915 20 C -0.056 4.056 21 C -0.099 4.099 22 C 0.565 3.435 23 N -0.846 5.846 24 O -0.523 6.523 25 C -0.123 4.123 26 C 0.100 3.900 27 N -0.439 5.439 28 C -0.171 4.171 29 H 0.102 0.898 30 C 0.159 3.841 31 H 0.253 0.747 32 H 0.136 0.864 33 H 0.015 0.985 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.412 0.588 37 H 0.163 0.837 38 H 0.402 0.598 39 H 0.410 0.590 40 H 0.145 0.855 41 H 0.173 0.827 42 H 0.024 0.976 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 -29.464 5.854 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.210 4.210 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.030 3.970 11 C -0.174 4.174 12 H 0.121 0.879 13 C -0.174 4.174 14 H 0.121 0.879 15 C 0.029 3.971 16 N -0.350 5.350 17 C 0.350 3.650 18 O -0.407 6.407 19 C -0.054 4.054 20 C -0.077 4.077 21 C -0.111 4.111 22 C 0.349 3.651 23 N -0.411 5.411 24 O -0.398 6.398 25 C -0.143 4.143 26 C -0.060 4.060 27 N -0.151 5.151 28 C -0.191 4.191 29 H 0.120 0.880 30 C 0.032 3.968 31 H 0.064 0.936 32 H 0.153 0.847 33 H 0.033 0.967 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.180 0.820 38 H 0.232 0.768 39 H 0.241 0.759 40 H 0.163 0.837 41 H 0.190 0.810 42 H 0.041 0.959 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.499 -28.145 4.627 28.736 hybrid contribution 0.445 -0.532 0.517 0.865 sum -3.054 -28.677 5.143 29.294 Atomic orbital electron populations 1.69492 1.04953 1.24735 1.58029 1.24754 0.95698 0.97682 1.02841 0.86022 0.78443 0.83174 0.77565 1.21627 1.21639 1.20781 1.19114 0.90374 0.82273 1.42494 0.90322 1.46161 1.01375 0.99384 1.85780 1.22569 0.85339 0.95510 0.93569 1.24190 0.99836 0.90883 1.02464 0.87936 1.22564 1.01826 0.93854 0.99119 0.87924 1.20993 1.01113 0.80958 0.94017 1.45886 1.58485 1.08151 1.22477 1.17744 0.79229 0.82787 0.85262 1.90828 1.44583 1.85369 1.19884 1.21252 0.97699 0.94455 0.91969 1.22273 0.94203 0.90180 1.01079 1.20274 1.00808 0.94429 0.95558 1.18087 0.78748 0.83684 0.84552 1.43684 1.63311 1.11457 1.22659 1.90884 1.43091 1.85638 1.20226 1.22552 0.96405 1.00413 0.94971 1.22851 0.96520 0.87006 0.99592 1.67488 1.11784 1.31080 1.04726 1.23997 0.90683 1.02755 1.01702 0.87966 1.21089 0.94898 0.85970 0.94814 0.93598 0.84734 0.96678 0.90734 0.91076 0.75128 0.81975 0.76822 0.75854 0.83732 0.81020 0.95880 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.12 55.49 0.56 -26.17 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.21 -5.97 10.42 -15.06 -0.16 -6.13 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.46 3.46 -165.73 -0.57 -16.04 16 10 C 0.15 3.70 6.43 -0.29 0.00 3.69 16 11 C -0.15 -2.96 6.76 -89.22 -0.60 -3.56 16 12 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 13 C -0.15 -2.41 5.38 -90.62 -0.49 -2.90 16 14 H 0.10 1.58 8.04 -51.93 -0.42 1.16 16 15 C 0.15 2.13 5.95 -4.04 -0.02 2.10 16 16 N -0.70 -8.87 5.54 -61.14 -0.34 -9.21 16 17 C 0.57 7.71 7.81 -12.18 -0.10 7.62 16 18 O -0.53 -8.83 16.32 5.35 0.09 -8.74 16 19 C 0.08 0.94 6.75 -83.05 -0.56 0.38 16 20 C -0.06 -0.58 9.20 -38.64 -0.36 -0.94 16 21 C -0.10 -0.75 5.91 -104.68 -0.62 -1.37 16 22 C 0.57 4.44 8.07 -12.19 -0.10 4.34 16 23 N -0.85 -2.53 8.83 30.60 0.27 -2.26 16 24 O -0.52 -6.50 17.28 5.35 0.09 -6.41 16 25 C -0.12 -0.53 9.62 -38.90 -0.37 -0.91 16 26 C 0.10 0.56 11.17 -17.61 -0.20 0.37 16 27 N -0.44 -4.05 9.51 -9.85 -0.09 -4.14 16 28 C -0.17 -3.08 6.74 -89.24 -0.60 -3.68 16 29 H 0.10 1.72 8.12 -51.93 -0.42 1.30 16 30 C 0.16 3.31 7.05 -2.43 -0.02 3.29 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.14 3.64 5.34 -51.93 -0.28 3.36 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 36 H 0.41 4.65 7.73 -40.82 -0.32 4.33 16 37 H 0.16 1.92 7.33 -52.48 -0.38 1.54 16 38 H 0.40 -0.11 6.96 -40.82 -0.28 -0.40 16 39 H 0.41 0.81 8.93 -40.82 -0.36 0.44 16 40 H 0.15 -0.01 6.53 -52.48 -0.34 -0.35 16 41 H 0.17 0.40 8.06 -52.49 -0.42 -0.02 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -35.75 366.51 -9.08 -44.84 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.30 Total: 3.80 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -4.29 Total: 1.80 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.17 Total: -57.81 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.18 Total: -15.15 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.75 -9.08 -44.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979141944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.578 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds