Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35423 * 116.99617 * 2 1 4 4 C 1.36097 * 119.71439 * 179.97438 * 3 2 1 5 5 C 1.39755 * 120.24119 * 179.97438 * 4 3 2 6 6 C 1.36659 * 119.48120 * 0.02562 * 5 4 3 7 7 C 1.39914 * 119.38734 * 0.05583 * 6 5 4 8 8 C 1.40944 * 132.86296 * 179.97438 * 7 6 5 9 9 C 1.46438 * 126.59505 * 0.02562 * 8 7 6 10 10 O 1.21738 * 120.00238 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99990 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99967 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.84576 * 46.29259 * 12 11 9 14 14 C 1.53779 * 113.61191 * 177.59383 * 12 11 9 15 15 C 1.53774 * 87.07954 * 89.12145 * 14 12 11 16 16 H 1.09002 * 113.69235 * 139.99452 * 15 14 12 17 17 N 1.46501 * 113.61399 * 270.88322 * 15 14 12 18 18 C 1.36945 * 119.99978 * 255.08230 * 17 15 14 19 19 H 1.07998 * 119.99710 * 359.97438 * 18 17 15 20 20 C 1.38807 * 120.00284 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99657 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00316 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47278 * 59.99339 * 22 20 18 24 24 H 1.48498 * 109.47153 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46817 * 299.99562 * 22 20 18 26 26 C 1.53775 * 113.61703 * 275.09607 * 12 11 9 27 27 C 1.40681 * 106.80984 * 179.97438 * 8 7 6 28 28 N 1.30638 * 108.75822 * 0.25974 * 27 8 7 29 29 N 1.36471 * 119.72152 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47120 * 299.99604 * 1 2 3 31 31 H 1.08998 * 109.47062 * 60.00512 * 1 2 3 32 32 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.88093 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.25999 * 180.02562 * 5 4 3 35 35 H 1.08004 * 120.30824 * 179.97438 * 6 5 4 36 36 H 0.96993 * 119.99779 * 359.97438 * 11 9 8 37 37 H 1.09003 * 113.61022 * 203.66698 * 14 12 11 38 38 H 1.08999 * 113.61470 * 334.56663 * 14 12 11 39 39 H 0.96995 * 120.00490 * 75.07820 * 17 15 14 40 40 H 0.97010 * 120.00001 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.61463 * 25.42759 * 26 12 11 42 42 H 1.08995 * 113.61280 * 156.33476 * 26 12 11 43 43 H 1.08000 * 125.61995 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 6 3.4032 1.2712 0.0005 5 6 4.0490 2.5106 0.0000 6 6 3.3048 3.6568 -0.0005 7 6 1.9084 3.5687 0.0007 8 6 0.8865 4.5394 0.0010 9 6 1.0633 5.9931 -0.0004 10 8 2.1833 6.4701 -0.0016 11 7 -0.0141 6.8030 -0.0004 12 6 0.1628 8.2573 -0.0013 13 1 0.9026 8.5932 -0.7279 14 6 -1.1604 9.0386 -0.0603 15 6 -1.1683 8.9872 1.4765 16 1 -1.5040 9.9128 1.9440 17 7 -1.8342 7.8011 2.0206 18 6 -3.0830 7.9094 2.5721 19 1 -3.5767 8.8694 2.6064 20 6 -3.7142 6.7856 3.0871 21 7 -3.1127 5.6156 3.0449 22 14 -5.4179 6.9332 3.8388 23 1 -6.3676 7.4414 2.8166 24 1 -5.8675 5.5994 4.3119 25 1 -5.3730 7.8763 4.9851 26 6 0.3620 8.8545 1.4017 27 6 -0.3359 3.8432 0.0018 28 7 -0.0888 2.5604 0.0075 29 7 1.2948 2.3475 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.9850 0.3614 0.0005 34 1 5.1278 2.5622 0.0000 35 1 3.7900 4.6217 -0.0005 36 1 -0.9064 6.4229 0.0001 37 1 -1.0549 10.0461 -0.4629 38 1 -1.9765 8.4813 -0.5202 39 1 -1.3907 6.9390 1.9901 40 1 -3.5536 4.8302 3.4051 41 1 0.7748 8.1484 2.1222 42 1 0.8836 9.8115 1.3988 43 1 -1.3170 4.2948 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022156911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = 83.610535 kcal Electronic energy + Delta-G solvation = -28305.066208 eV Core-core repulsion = 24354.579718 eV Total energy + Delta-G solvation = -3950.486490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.36606 -39.73205 -39.06890 -37.47831 -36.89758 -33.59557 -32.71624 -32.14019 -30.84395 -29.92032 -29.18035 -26.91227 -25.12616 -24.62880 -23.77344 -23.55957 -22.39413 -21.98039 -20.03485 -18.75995 -18.30308 -17.39070 -17.25506 -16.81237 -16.51918 -16.25146 -15.65236 -15.31450 -14.98701 -14.76694 -14.64337 -14.57461 -13.85170 -13.71815 -13.44338 -13.15584 -12.94368 -12.47188 -12.38167 -12.33929 -12.23496 -11.91897 -11.71486 -11.40101 -11.22766 -10.89132 -10.80223 -10.67526 -10.30478 -10.22030 -9.98873 -9.79707 -9.53950 -9.48341 -9.38466 -8.95727 -8.42916 -7.44106 -7.04036 -5.84621 -3.13458 0.62919 0.94426 1.84557 2.28980 2.67866 3.14634 3.39795 3.45171 3.45331 3.65488 3.88915 4.28944 4.53121 4.55217 4.74402 4.91461 4.99084 5.13807 5.15491 5.18179 5.25943 5.29941 5.45488 5.46327 5.53326 5.55241 5.63789 5.85954 5.88684 6.01382 6.13615 6.18560 6.20711 6.32711 6.38875 6.45718 6.49551 6.69130 6.73877 6.83285 6.89230 7.19830 7.46776 7.66391 8.08714 8.34918 8.76647 9.46085 10.03083 10.38663 11.37382 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.003905 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.852318 B = 7169.040536 C = 9117.237559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.304 6.304 3 C 0.352 3.648 4 C -0.211 4.211 5 C -0.040 4.040 6 C -0.146 4.146 7 C 0.191 3.809 8 C -0.310 4.310 9 C 0.603 3.397 10 O -0.561 6.561 11 N -0.700 5.700 12 C 0.133 3.867 13 H 0.079 0.921 14 C -0.179 4.179 15 C 0.164 3.836 16 H 0.062 0.938 17 N -0.706 5.706 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.168 4.168 27 C 0.144 3.856 28 N -0.331 5.331 29 N -0.309 5.309 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.406 0.594 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.403 -7.670 -9.171 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.212 6.212 3 C 0.200 3.800 4 C -0.234 4.234 5 C -0.064 4.064 6 C -0.165 4.165 7 C 0.072 3.928 8 C -0.324 4.324 9 C 0.392 3.608 10 O -0.442 6.442 11 N -0.351 5.351 12 C 0.027 3.973 13 H 0.097 0.903 14 C -0.221 4.221 15 C 0.052 3.948 16 H 0.080 0.920 17 N -0.346 5.346 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.208 4.208 27 C -0.037 4.037 28 N -0.151 5.151 29 N -0.084 5.084 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.178 0.822 34 H 0.167 0.833 35 H 0.179 0.821 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 11.381 -8.721 -9.069 16.966 hybrid contribution -1.318 0.364 0.539 1.470 sum 10.062 -8.357 -8.530 15.616 Atomic orbital electron populations 1.23448 0.74879 1.03628 1.04346 1.86097 1.24207 1.22933 1.87996 1.19267 0.88882 0.76040 0.95795 1.19954 0.88136 1.00745 1.14527 1.21040 1.00958 0.90251 0.94104 1.20769 0.89498 1.01187 1.05075 1.19189 0.93399 0.83821 0.96365 1.19752 0.91031 0.93760 1.27883 1.16713 0.84445 0.84230 0.75456 1.90717 1.24138 1.76903 1.52403 1.45519 1.09097 1.05819 1.74645 1.21650 0.98397 0.79494 0.97728 0.90282 1.24139 0.96094 0.99213 1.02642 1.21181 0.90621 0.91951 0.91043 0.91969 1.42268 1.17522 1.05347 1.69497 1.19259 0.92540 0.94371 1.31256 0.91038 1.24721 0.98703 0.95517 1.01666 1.69637 1.38187 0.98589 1.51551 0.86265 0.84208 0.76527 0.79145 1.21249 1.21758 1.21286 1.23837 0.98989 1.00718 0.97255 1.24339 0.99552 0.89889 0.89951 1.77660 0.85856 1.18510 1.33063 1.46718 1.07226 1.05391 1.49102 0.90698 0.91027 0.88183 0.82189 0.83295 0.82052 0.75705 0.89952 0.90928 0.77907 0.93413 0.91301 0.89885 0.77850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 101.05 0.97 1.31 16 2 O -0.30 -3.64 10.45 -17.96 -0.19 -3.82 16 3 C 0.35 4.52 7.49 -16.26 -0.12 4.40 16 4 C -0.21 -2.13 9.90 -39.78 -0.39 -2.52 16 5 C -0.04 -0.40 10.08 -39.59 -0.40 -0.79 16 6 C -0.15 -1.92 9.72 -39.52 -0.38 -2.31 16 7 C 0.19 3.04 6.76 -84.06 -0.57 2.48 16 8 C -0.31 -5.34 6.17 -104.65 -0.65 -5.98 16 9 C 0.60 11.11 7.78 -12.96 -0.10 11.01 16 10 O -0.56 -11.30 15.64 5.15 0.08 -11.22 16 11 N -0.70 -12.25 4.32 -54.39 -0.23 -12.48 16 12 C 0.13 2.23 4.00 -67.12 -0.27 1.96 16 13 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 14 C -0.18 -2.93 7.57 -25.92 -0.20 -3.13 16 15 C 0.16 3.19 4.55 -67.12 -0.31 2.88 16 16 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 17 N -0.71 -16.82 5.02 -52.64 -0.26 -17.08 16 18 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.45 13.06 55.49 0.72 -25.72 16 22 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.17 -2.96 7.62 -25.92 -0.20 -3.16 16 27 C 0.14 2.35 11.44 -17.14 -0.20 2.15 16 28 N -0.33 -5.26 8.78 30.76 0.27 -4.99 16 29 N -0.31 -4.68 3.78 -10.65 -0.04 -4.72 16 30 H 0.07 0.94 7.12 -51.93 -0.37 0.57 16 31 H 0.07 0.82 7.14 -51.93 -0.37 0.45 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.16 2.17 7.11 -52.48 -0.37 1.79 16 36 H 0.41 7.16 6.75 -40.82 -0.28 6.89 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.39 9.63 6.36 -40.82 -0.26 9.37 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.21 3.10 7.46 -52.49 -0.39 2.71 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -31.78 361.13 -7.67 -39.45 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -5.38 Total: 17.19 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -3.05 Total: 1.34 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: 0.46 Total: -65.00 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.11 Total: -15.04 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.78 -7.67 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022156911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.063 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds