Wall clock time and date at job start Tue Mar 31 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35636 * 116.99599 * 2 1 4 4 C 1.40755 * 120.33623 * 0.02562 * 3 2 1 5 5 C 1.35018 * 120.04436 * 179.97438 * 4 3 2 6 6 N 1.36027 * 120.86204 * 0.02669 * 5 4 3 7 7 C 1.36670 * 120.88295 * 359.97438 * 6 5 4 8 8 C 1.37987 * 120.33000 * 179.97438 * 3 2 1 9 9 N 1.33329 * 108.60308 * 180.02562 * 7 6 5 10 10 C 1.32328 * 109.85439 * 359.76007 * 9 7 6 11 11 C 1.38498 * 108.25758 * 0.38067 * 10 9 7 12 12 C 1.41652 * 126.78616 * 179.88712 * 11 10 9 13 13 O 1.21804 * 119.99978 * 185.05431 * 12 11 10 14 14 N 1.34780 * 120.00158 * 5.05477 * 12 11 10 15 15 C 1.46499 * 120.00024 * 174.94964 * 14 12 11 16 16 H 1.09009 * 112.84723 * 336.19248 * 15 14 12 17 17 C 1.53771 * 113.69370 * 107.46516 * 15 14 12 18 18 C 1.53779 * 87.08470 * 139.98976 * 17 15 14 19 19 H 1.09005 * 113.68573 * 89.12452 * 18 17 15 20 20 N 1.46498 * 113.61778 * 220.01779 * 18 17 15 21 21 C 1.36936 * 120.00266 * 252.77430 * 20 18 17 22 22 H 1.08001 * 119.99755 * 359.72234 * 21 20 18 23 23 C 1.38814 * 120.00111 * 179.72223 * 21 20 18 24 24 N 1.31614 * 120.00004 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99944 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47141 * 59.99895 * 25 23 21 27 27 H 1.48498 * 109.47044 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46808 * 299.99843 * 25 23 21 29 29 C 1.53779 * 113.61123 * 205.00197 * 15 14 12 30 30 H 1.09005 * 109.46891 * 299.99756 * 1 2 3 31 31 H 1.09002 * 109.47467 * 60.00191 * 1 2 3 32 32 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.98176 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.56491 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.38505 * 0.04807 * 8 3 2 36 36 H 1.07996 * 125.86769 * 180.24256 * 10 9 7 37 37 H 0.96996 * 119.99803 * 354.94451 * 14 12 11 38 38 H 1.09003 * 113.61641 * 25.43718 * 17 15 14 39 39 H 1.09010 * 113.61338 * 254.54067 * 17 15 14 40 40 H 0.97000 * 119.99464 * 72.49523 * 20 18 17 41 41 H 0.96999 * 120.00243 * 179.97438 * 24 23 21 42 42 H 1.08998 * 113.61727 * 105.38935 * 29 15 14 43 43 H 1.09001 * 113.69217 * 334.49016 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2850 2.3935 0.0005 5 6 1.9040 3.5934 0.0011 6 7 3.2616 3.6782 0.0005 7 6 4.0349 2.5513 0.0000 8 6 3.4222 1.2888 0.0005 9 7 5.3174 2.9155 0.0001 10 6 5.4098 4.2356 -0.0045 11 6 4.1280 4.7602 0.0009 12 6 3.7727 6.1314 0.0009 13 8 2.6032 6.4575 0.0990 14 7 4.7286 7.0753 -0.1077 15 6 4.3545 8.4873 -0.2192 16 1 3.3468 8.6286 -0.6101 17 6 4.6429 9.3051 1.0507 18 6 5.1053 10.4392 0.1206 19 1 4.3038 11.1149 -0.1779 20 7 6.2948 11.1454 0.6027 21 6 6.1810 12.4135 1.1068 22 1 5.2149 12.8947 1.1448 23 6 7.3073 13.0804 1.5688 24 7 8.4847 12.4941 1.5220 25 14 7.1521 14.8106 2.2558 26 1 6.2372 14.7985 3.4254 27 1 8.4900 15.2973 2.6781 28 1 6.6058 15.7114 1.2092 29 6 5.4146 9.3518 -0.9219 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.2061 2.3429 0.0005 34 1 1.3134 4.4977 0.0019 35 1 4.0218 0.3905 0.0002 36 1 6.3269 4.8057 -0.0092 37 1 5.6643 6.8197 -0.1120 38 1 5.4424 8.8906 1.6648 39 1 3.7493 9.5487 1.6255 40 1 7.1625 10.7131 0.5685 41 1 9.2719 12.9603 1.8446 42 1 5.1440 9.6331 -1.9396 43 1 6.4256 8.9511 -0.8481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022430846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:56 Heat of formation + Delta-G solvation = 56.814575 kcal Electronic energy + Delta-G solvation = -26704.242088 eV Core-core repulsion = 22752.593638 eV Total energy + Delta-G solvation = -3951.648450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.20586 -40.20519 -39.65122 -37.89774 -36.87753 -34.15085 -33.49269 -32.82474 -30.85552 -30.15796 -29.30420 -27.62182 -25.13900 -24.98696 -24.24302 -23.70073 -22.37705 -22.00516 -20.58024 -19.54337 -18.52618 -18.31857 -17.39336 -17.08270 -16.78181 -16.70994 -16.08091 -16.01323 -15.37842 -14.83413 -14.76322 -14.52130 -14.39203 -14.27127 -13.86447 -13.65015 -13.10127 -13.03748 -12.90108 -12.62816 -12.16755 -12.04277 -11.94287 -11.92206 -11.27578 -10.93453 -10.76847 -10.56590 -10.49530 -10.43394 -10.34422 -10.08957 -9.88210 -9.62671 -9.36593 -8.92934 -8.83366 -7.98089 -6.99380 -5.80583 -3.09553 0.25147 0.48712 1.96683 2.01969 2.48513 3.06631 3.27193 3.36203 3.42953 3.47628 3.48455 3.92062 4.01348 4.13082 4.44894 4.52401 4.56731 4.57810 4.61210 4.75074 4.90343 4.98442 5.06088 5.19430 5.21362 5.34925 5.42502 5.46643 5.49808 5.79404 5.85324 5.93115 6.09066 6.10979 6.24331 6.29795 6.46638 6.50244 6.60597 6.65752 6.71414 7.04345 7.36870 7.56116 7.67753 8.17377 8.37814 9.49170 10.05671 10.40210 11.41633 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034545 B = 0.001918 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.342634 B =14593.828076 C =15035.477751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.158 3.842 4 C -0.217 4.217 5 C 0.123 3.877 6 N -0.339 5.339 7 C 0.279 3.721 8 C -0.147 4.147 9 N -0.500 5.500 10 C 0.117 3.883 11 C -0.150 4.150 12 C 0.597 3.403 13 O -0.563 6.563 14 N -0.702 5.702 15 C 0.122 3.878 16 H 0.109 0.891 17 C -0.176 4.176 18 C 0.169 3.831 19 H 0.080 0.920 20 N -0.710 5.710 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 C -0.158 4.158 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.161 0.839 34 H 0.183 0.817 35 H 0.163 0.837 36 H 0.193 0.807 37 H 0.401 0.599 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.067 0.933 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.425 -25.838 -5.426 30.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.105 3.895 4 C -0.238 4.238 5 C -0.003 4.003 6 N -0.011 5.011 7 C 0.040 3.960 8 C -0.168 4.168 9 N -0.219 5.219 10 C -0.043 4.043 11 C -0.262 4.262 12 C 0.386 3.614 13 O -0.444 6.444 14 N -0.351 5.351 15 C 0.017 3.983 16 H 0.127 0.873 17 C -0.218 4.218 18 C 0.056 3.944 19 H 0.098 0.902 20 N -0.347 5.347 21 C -0.377 4.377 22 H 0.090 0.910 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.198 4.198 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.179 0.821 34 H 0.200 0.800 35 H 0.180 0.820 36 H 0.210 0.790 37 H 0.236 0.764 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.546 -26.058 -5.314 30.805 hybrid contribution -0.207 1.297 0.489 1.402 sum -15.753 -24.761 -4.825 29.741 Atomic orbital electron populations 1.23216 0.77375 1.04742 1.01873 1.86050 1.22090 1.25509 1.87894 1.18873 0.91579 0.84538 0.94469 1.21112 1.01752 0.90443 1.10478 1.21861 0.81600 1.00806 0.96039 1.42590 1.06008 1.08087 1.44438 1.20593 0.86884 0.86793 1.01723 1.19370 0.91308 0.94961 1.11151 1.70591 1.14033 1.13088 1.24221 1.23249 0.95624 0.90426 0.94964 1.19882 0.89818 0.88904 1.27643 1.15388 0.85889 0.83301 0.76818 1.90790 1.18352 1.83194 1.52049 1.45708 1.08933 1.06817 1.73621 1.22521 0.99605 0.76903 0.99223 0.87266 1.24351 1.01363 0.98953 0.97168 1.21345 0.91398 0.90100 0.91562 0.90212 1.42341 1.04456 1.15168 1.72783 1.19267 0.93853 0.91230 1.33344 0.91046 1.24763 0.95407 0.98707 1.01936 1.69641 0.98084 1.37715 1.52575 0.86253 0.76551 0.84383 0.78903 1.21227 1.21681 1.21205 1.23880 0.98537 0.97715 0.99692 0.92073 0.92087 0.87580 0.82124 0.79960 0.81983 0.79000 0.76424 0.90096 0.92212 0.78056 0.93386 0.91401 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.82 101.05 0.99 1.06 16 2 O -0.30 -2.10 10.49 -18.61 -0.20 -2.29 16 3 C 0.16 1.28 6.72 -38.72 -0.26 1.02 16 4 C -0.22 -1.54 8.98 -39.78 -0.36 -1.89 16 5 C 0.12 1.19 10.49 -16.84 -0.18 1.01 16 6 N -0.34 -4.10 2.97 -60.20 -0.18 -4.28 16 7 C 0.28 3.37 7.76 -155.99 -1.21 2.16 16 8 C -0.15 -1.42 10.09 -38.89 -0.39 -1.82 16 9 N -0.50 -6.46 11.25 -12.31 -0.14 -6.60 16 10 C 0.12 1.34 11.32 -17.24 -0.20 1.15 16 11 C -0.15 -1.92 6.83 -83.40 -0.57 -2.49 16 12 C 0.60 8.44 7.59 -14.96 -0.11 8.33 16 13 O -0.56 -9.38 14.99 5.10 0.08 -9.30 16 14 N -0.70 -8.99 5.33 -55.89 -0.30 -9.28 16 15 C 0.12 1.77 4.20 -67.12 -0.28 1.49 16 16 H 0.11 1.64 7.53 -51.92 -0.39 1.25 16 17 C -0.18 -3.02 7.68 -25.92 -0.20 -3.22 16 18 C 0.17 3.21 4.48 -67.12 -0.30 2.91 16 19 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 20 N -0.71 -17.24 5.40 -52.64 -0.28 -17.53 16 21 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 25 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 C -0.16 -2.40 7.58 -25.92 -0.20 -2.60 16 30 H 0.06 0.12 7.68 -51.93 -0.40 -0.28 16 31 H 0.06 0.12 7.68 -51.93 -0.40 -0.28 16 32 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.16 0.59 6.39 -52.49 -0.34 0.26 16 34 H 0.18 1.74 6.80 -52.48 -0.36 1.38 16 35 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.19 1.54 7.37 -52.49 -0.39 1.15 16 37 H 0.40 4.17 7.51 -40.82 -0.31 3.86 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 40 H 0.39 9.86 7.92 -40.82 -0.32 9.54 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -34.59 365.23 -8.72 -43.31 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.40 Total: 10.50 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.51 Total: -0.19 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.17 Total: -64.66 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.12 Total: -11.60 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.59 -8.72 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022430846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.120 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds