Wall clock time and date at job start Tue Mar 31 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35636 * 116.99599 * 2 1 4 4 C 1.40755 * 120.33623 * 0.02562 * 3 2 1 5 5 C 1.35018 * 120.04436 * 179.97438 * 4 3 2 6 6 N 1.36027 * 120.86204 * 0.02669 * 5 4 3 7 7 C 1.36670 * 120.88295 * 359.97438 * 6 5 4 8 8 C 1.37987 * 120.33000 * 179.97438 * 3 2 1 9 9 N 1.33329 * 108.60308 * 180.02562 * 7 6 5 10 10 C 1.32328 * 109.85439 * 359.76007 * 9 7 6 11 11 C 1.38498 * 108.25758 * 0.38067 * 10 9 7 12 12 C 1.41652 * 126.78616 * 179.88712 * 11 10 9 13 13 O 1.21804 * 119.99978 * 185.05431 * 12 11 10 14 14 N 1.34780 * 120.00158 * 5.05477 * 12 11 10 15 15 C 1.46499 * 120.00024 * 174.94964 * 14 12 11 16 16 H 1.09009 * 112.84723 * 336.19248 * 15 14 12 17 17 C 1.53771 * 113.69370 * 107.46516 * 15 14 12 18 18 C 1.53779 * 87.08470 * 139.98976 * 17 15 14 19 19 H 1.09005 * 113.68573 * 89.12452 * 18 17 15 20 20 N 1.46498 * 113.61778 * 220.01779 * 18 17 15 21 21 C 1.36936 * 120.00266 * 252.77430 * 20 18 17 22 22 H 1.08001 * 119.99755 * 359.72234 * 21 20 18 23 23 C 1.38814 * 120.00111 * 179.72223 * 21 20 18 24 24 N 1.31614 * 120.00004 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99944 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47141 * 59.99895 * 25 23 21 27 27 H 1.48498 * 109.47044 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46808 * 299.99843 * 25 23 21 29 29 C 1.53779 * 113.61123 * 205.00197 * 15 14 12 30 30 H 1.09005 * 109.46891 * 299.99756 * 1 2 3 31 31 H 1.09002 * 109.47467 * 60.00191 * 1 2 3 32 32 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.98176 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.56491 * 180.02562 * 5 4 3 35 35 H 1.07999 * 120.38505 * 0.04807 * 8 3 2 36 36 H 1.07996 * 125.86769 * 180.24256 * 10 9 7 37 37 H 0.96996 * 119.99803 * 354.94451 * 14 12 11 38 38 H 1.09003 * 113.61641 * 25.43718 * 17 15 14 39 39 H 1.09010 * 113.61338 * 254.54067 * 17 15 14 40 40 H 0.97000 * 119.99464 * 72.49523 * 20 18 17 41 41 H 0.96999 * 120.00243 * 179.97438 * 24 23 21 42 42 H 1.08998 * 113.61727 * 105.38935 * 29 15 14 43 43 H 1.09001 * 113.69217 * 334.49016 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2850 2.3935 0.0005 5 6 1.9040 3.5934 0.0011 6 7 3.2616 3.6782 0.0005 7 6 4.0349 2.5513 0.0000 8 6 3.4222 1.2888 0.0005 9 7 5.3174 2.9155 0.0001 10 6 5.4098 4.2356 -0.0045 11 6 4.1280 4.7602 0.0009 12 6 3.7727 6.1314 0.0009 13 8 2.6032 6.4575 0.0990 14 7 4.7286 7.0753 -0.1077 15 6 4.3545 8.4873 -0.2192 16 1 3.3468 8.6286 -0.6101 17 6 4.6429 9.3051 1.0507 18 6 5.1053 10.4392 0.1206 19 1 4.3038 11.1149 -0.1779 20 7 6.2948 11.1454 0.6027 21 6 6.1810 12.4135 1.1068 22 1 5.2149 12.8947 1.1448 23 6 7.3073 13.0804 1.5688 24 7 8.4847 12.4941 1.5220 25 14 7.1521 14.8106 2.2558 26 1 6.2372 14.7985 3.4254 27 1 8.4900 15.2973 2.6781 28 1 6.6058 15.7114 1.2092 29 6 5.4146 9.3518 -0.9219 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.2061 2.3429 0.0005 34 1 1.3134 4.4977 0.0019 35 1 4.0218 0.3905 0.0002 36 1 6.3269 4.8057 -0.0092 37 1 5.6643 6.8197 -0.1120 38 1 5.4424 8.8906 1.6648 39 1 3.7493 9.5487 1.6255 40 1 7.1625 10.7131 0.5685 41 1 9.2719 12.9603 1.8446 42 1 5.1440 9.6331 -1.9396 43 1 6.4256 8.9511 -0.8481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022430846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:55 Heat of formation + Delta-G solvation = 33.026659 kcal Electronic energy + Delta-G solvation = -26705.273610 eV Core-core repulsion = 22752.593638 eV Total energy + Delta-G solvation = -3952.679972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.02114 -41.07647 -40.54789 -39.21106 -37.59646 -35.77258 -34.36710 -34.22992 -31.96342 -31.52891 -30.23118 -28.09693 -26.54181 -26.39323 -25.33763 -24.73506 -23.36009 -23.11564 -21.64066 -20.88771 -19.47312 -19.11301 -18.93068 -18.05432 -17.74000 -17.45972 -17.28286 -16.63014 -16.35556 -16.11945 -15.99126 -15.61484 -15.49030 -15.33157 -14.91947 -14.82950 -14.38773 -14.30941 -13.62453 -13.54102 -13.27747 -13.14182 -13.12592 -12.78779 -12.71694 -12.41917 -12.26917 -12.16283 -12.04900 -11.75878 -11.56109 -11.43606 -11.09644 -10.99401 -10.83324 -10.14174 -10.02890 -8.97068 -8.78417 -7.93269 -5.21055 -0.48977 -0.29772 1.14188 1.19670 1.49177 1.51432 1.57465 1.97549 2.26005 2.30414 2.33645 2.59099 3.21150 3.33236 3.38274 3.42361 3.70294 3.80533 3.85091 3.87651 3.92639 3.99731 4.20976 4.30458 4.33621 4.34601 4.41985 4.48724 4.70406 4.76624 4.80208 4.85709 4.92300 4.93252 5.10184 5.14537 5.18600 5.29985 5.38093 5.52436 5.68902 5.75425 6.11322 6.28950 6.45002 6.58984 7.12799 7.35724 8.12060 8.35191 9.29472 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034545 B = 0.001918 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.342634 B =14593.828076 C =15035.477751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.313 6.313 3 C 0.174 3.826 4 C -0.193 4.193 5 C 0.100 3.900 6 N -0.347 5.347 7 C 0.270 3.730 8 C -0.166 4.166 9 N -0.529 5.529 10 C 0.126 3.874 11 C -0.180 4.180 12 C 0.600 3.400 13 O -0.593 6.593 14 N -0.694 5.694 15 C 0.143 3.857 16 H 0.110 0.890 17 C -0.171 4.171 18 C 0.150 3.850 19 H 0.080 0.920 20 N -0.723 5.723 21 C -0.246 4.246 22 H 0.076 0.924 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.971 3.029 26 H -0.281 1.281 27 H -0.296 1.296 28 H -0.277 1.277 29 C -0.139 4.139 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.200 0.800 34 H 0.181 0.819 35 H 0.170 0.830 36 H 0.220 0.780 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.084 0.916 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.373 -27.297 -5.946 32.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.224 6.224 3 C 0.120 3.880 4 C -0.214 4.214 5 C -0.025 4.025 6 N -0.018 5.018 7 C 0.032 3.968 8 C -0.187 4.187 9 N -0.249 5.249 10 C -0.035 4.035 11 C -0.292 4.292 12 C 0.391 3.609 13 O -0.477 6.477 14 N -0.344 5.344 15 C 0.037 3.963 16 H 0.128 0.872 17 C -0.213 4.213 18 C 0.039 3.961 19 H 0.098 0.902 20 N -0.361 5.361 21 C -0.378 4.378 22 H 0.094 0.906 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.800 3.200 26 H -0.207 1.207 27 H -0.223 1.223 28 H -0.203 1.203 29 C -0.179 4.179 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.217 0.783 34 H 0.199 0.801 35 H 0.188 0.812 36 H 0.236 0.764 37 H 0.251 0.749 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.208 0.792 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.550 -27.558 -5.854 33.192 hybrid contribution 0.186 1.512 0.637 1.651 sum -17.364 -26.047 -5.216 31.736 Atomic orbital electron populations 1.23607 0.75031 1.06603 1.03258 1.86070 1.24466 1.24709 1.87195 1.18944 0.91221 0.85421 0.92377 1.21509 1.03451 0.88953 1.07458 1.22119 0.80950 1.01868 0.97576 1.42701 1.06763 1.07795 1.44581 1.20929 0.86946 0.87490 1.01439 1.19563 0.92426 0.94453 1.12307 1.70586 1.14820 1.13756 1.25779 1.23721 0.96220 0.90208 0.93319 1.19752 0.90605 0.88515 1.30318 1.15514 0.85438 0.83895 0.76056 1.90764 1.19539 1.83691 1.53706 1.45522 1.09597 1.05869 1.73377 1.22168 0.99448 0.77665 0.96992 0.87217 1.24182 1.00607 0.98739 0.97759 1.21670 0.89945 0.90860 0.93584 0.90201 1.42488 1.05585 1.14705 1.73282 1.19667 0.93880 0.92331 1.31917 0.90600 1.25531 0.95317 1.02443 1.03397 1.69790 0.98542 1.39066 1.54377 0.85253 0.76105 0.80277 0.78369 1.20692 1.22263 1.20343 1.23683 0.99063 0.95676 0.99439 0.90712 0.90588 0.85726 0.78339 0.80142 0.81241 0.76378 0.74932 0.91101 0.92833 0.79168 0.94053 0.89710 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.82 113.37 1.11 1.13 16 2 O -0.31 -3.47 10.49 -89.50 -0.94 -4.41 16 3 C 0.17 2.45 6.72 22.83 0.15 2.61 16 4 C -0.19 -2.26 8.98 22.14 0.20 -2.06 16 5 C 0.10 1.84 10.49 83.30 0.87 2.72 16 6 N -0.35 -8.27 2.97 -344.36 -1.02 -9.29 16 7 C 0.27 6.45 7.76 133.85 1.04 7.49 16 8 C -0.17 -3.08 10.09 22.72 0.23 -2.85 16 9 N -0.53 -13.60 11.25 -192.87 -2.17 -15.77 16 10 C 0.13 2.83 11.32 84.68 0.96 3.79 16 11 C -0.18 -4.57 6.83 38.98 0.27 -4.31 16 12 C 0.60 16.73 7.59 85.08 0.65 17.37 16 13 O -0.59 -19.68 14.99 -4.68 -0.07 -19.75 16 14 N -0.69 -17.09 5.33 -448.91 -2.39 -19.48 16 15 C 0.14 3.99 4.20 45.51 0.19 4.18 16 16 H 0.11 3.16 7.53 -2.38 -0.02 3.14 16 17 C -0.17 -5.82 7.68 31.12 0.24 -5.58 16 18 C 0.15 5.63 4.48 45.52 0.20 5.83 16 19 H 0.08 2.98 8.10 -2.38 -0.02 2.96 16 20 N -0.72 -35.32 5.40 -320.44 -1.73 -37.05 16 21 C -0.25 -13.48 9.97 84.03 0.84 -12.64 16 22 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 24 N -0.97 -58.39 13.06 21.65 0.28 -58.10 16 25 Si 0.97 45.87 29.55 68.60 2.03 47.89 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 29 C -0.14 -4.02 7.58 31.12 0.24 -3.78 16 30 H 0.07 0.01 7.68 -2.38 -0.02 -0.01 16 31 H 0.08 -0.01 7.68 -2.39 -0.02 -0.03 16 32 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.20 0.67 6.39 -2.91 -0.02 0.65 16 34 H 0.18 3.36 6.80 -2.91 -0.02 3.34 16 35 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.22 3.26 7.37 -2.91 -0.02 3.24 16 37 H 0.41 8.07 7.51 -92.71 -0.70 7.37 16 38 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.38 19.51 7.92 -92.71 -0.73 18.77 16 41 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.09 2.53 8.10 -2.39 -0.02 2.51 16 Total: -1.00 -75.57 365.23 1.28 -74.29 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -0.36 Total: 31.56 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 7.65 Total: 10.13 kcal Atomic # 7 Polarization: -132.67 SS G_CDS: -7.03 Total: -139.70 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -1.01 Total: -24.16 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.57 1.28 -74.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022430846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.315 kcal (2) G-P(sol) polarization free energy of solvation -75.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds