Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 116.99974 * 2 1 4 4 C 1.36890 * 120.41927 * 359.72361 * 3 2 1 5 5 C 1.40110 * 119.35582 * 180.27102 * 4 3 2 6 6 C 1.35164 * 120.37639 * 0.02562 * 5 4 3 7 7 N 1.36359 * 120.81007 * 359.97438 * 6 5 4 8 8 N 1.40026 * 131.98984 * 180.02562 * 7 6 5 9 9 C 1.30765 * 109.59210 * 179.97438 * 8 7 6 10 10 C 1.40526 * 108.72412 * 359.97438 * 9 8 7 11 11 C 1.46593 * 126.57650 * 179.97438 * 10 9 8 12 12 O 1.21719 * 119.99670 * 180.02562 * 11 10 9 13 13 N 1.34777 * 120.00285 * 0.02562 * 11 10 9 14 14 C 1.46492 * 120.00006 * 179.97438 * 13 11 10 15 15 H 1.09006 * 112.85174 * 334.66962 * 14 13 11 16 16 C 1.53782 * 113.61435 * 105.86519 * 14 13 11 17 17 C 1.54052 * 86.98357 * 89.16380 * 16 14 13 18 18 H 1.08999 * 113.62259 * 139.98046 * 17 16 14 19 19 N 1.46506 * 113.68866 * 270.87137 * 17 16 14 20 20 C 1.36930 * 120.00527 * 252.52982 * 19 17 16 21 21 H 1.08002 * 119.99824 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00236 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00190 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46929 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47388 * 119.99815 * 24 22 20 27 27 H 1.48498 * 109.46804 * 239.99936 * 24 22 20 28 28 C 1.53782 * 113.61689 * 203.47634 * 14 13 11 29 29 C 1.36478 * 120.10648 * 0.02562 * 7 6 5 30 30 H 1.09005 * 109.46854 * 60.00202 * 1 2 3 31 31 H 1.09000 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47807 * 300.00381 * 1 2 3 33 33 H 1.07994 * 120.31931 * 0.25001 * 4 3 2 34 34 H 1.08001 * 119.80905 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.59268 * 179.97438 * 6 5 4 36 36 H 1.08000 * 125.63740 * 179.97438 * 9 8 7 37 37 H 0.96996 * 119.99606 * 0.02562 * 13 11 10 38 38 H 1.09002 * 113.61514 * 203.66101 * 16 14 13 39 39 H 1.08998 * 113.61547 * 334.56779 * 16 14 13 40 40 H 0.97010 * 119.99241 * 72.52907 * 19 17 16 41 41 H 0.96996 * 119.99854 * 179.97438 * 23 22 20 42 42 H 1.08998 * 113.61041 * 25.42535 * 28 14 13 43 43 H 1.08994 * 113.61793 * 156.33486 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.3088 2.3643 -0.0057 5 6 1.9679 3.6007 -0.0113 6 6 3.3185 3.6552 -0.0117 7 7 4.0636 2.5132 -0.0061 8 7 5.4471 2.2974 -0.0046 9 6 5.6904 1.0126 0.0021 10 6 4.4668 0.3217 0.0060 11 6 4.2849 -1.1329 0.0131 12 8 3.1634 -1.6059 0.0154 13 7 5.3594 -1.9464 0.0171 14 6 5.1776 -3.4000 0.0249 15 1 4.2242 -3.7051 0.4565 16 6 5.4830 -4.0662 -1.3271 17 6 6.9402 -4.1925 -0.8435 18 1 7.4097 -5.1382 -1.1139 19 7 7.7713 -3.0309 -1.1697 20 6 8.7238 -3.1238 -2.1490 21 1 8.8621 -4.0533 -2.6814 22 6 9.5109 -2.0231 -2.4584 23 7 9.3421 -0.8902 -1.8100 24 14 10.8098 -2.1497 -3.7950 25 1 10.7997 -3.5202 -4.3667 26 1 10.5159 -1.1639 -4.8659 27 1 12.1468 -1.8660 -3.2143 28 6 6.3836 -4.1687 0.5899 29 6 3.4488 1.2947 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2297 2.3217 -0.0062 34 1 1.3936 4.5153 -0.0163 35 1 3.8135 4.6151 -0.0165 36 1 6.6700 0.5577 0.0043 37 1 6.2531 -1.5694 0.0157 38 1 4.9838 -5.0255 -1.4639 39 1 5.3608 -3.3989 -2.1802 40 1 7.6468 -2.1960 -0.6917 41 1 9.8924 -0.1212 -2.0260 42 1 6.9881 -3.5840 1.2833 43 1 6.1302 -5.1559 0.9763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022860302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = 84.546241 kcal Electronic energy + Delta-G solvation = -28421.060854 eV Core-core repulsion = 24470.614940 eV Total energy + Delta-G solvation = -3950.445915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17864 -39.53007 -39.18557 -37.58506 -36.52535 -33.53621 -32.56058 -31.97637 -30.92790 -29.89209 -28.48836 -27.56581 -25.02384 -24.65122 -23.66171 -23.42491 -22.21444 -21.82632 -19.91800 -18.90542 -18.20342 -17.65211 -17.24129 -16.57821 -16.28239 -16.22824 -15.42086 -15.29019 -15.17686 -14.68063 -14.53426 -14.32839 -13.85890 -13.80437 -13.36862 -13.03746 -12.93068 -12.69103 -12.36634 -12.13527 -11.96788 -11.87310 -11.42483 -11.35744 -11.35538 -10.99358 -10.88624 -10.75206 -10.15286 -10.06595 -9.81107 -9.69648 -9.50448 -9.43521 -9.27271 -8.89509 -8.34538 -7.41789 -7.02242 -5.84381 -3.11695 0.60407 0.95460 2.04331 2.37630 3.13247 3.18039 3.41965 3.48271 3.50070 3.69759 3.93844 4.25105 4.44125 4.52754 4.56644 4.69677 4.95375 5.01996 5.12622 5.17864 5.28203 5.33829 5.36545 5.42114 5.50374 5.55321 5.62713 5.77604 5.87668 5.93512 5.98925 6.06799 6.22387 6.39260 6.40678 6.47777 6.68412 6.75491 6.81372 6.94979 7.17832 7.29851 7.51210 7.69687 8.15831 8.36512 8.87431 9.46665 10.01547 10.35119 11.39117 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.003781 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.792315 B = 7403.959474 C = 8979.023545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.254 6.254 3 C 0.156 3.844 4 C -0.209 4.209 5 C -0.120 4.120 6 C 0.064 3.936 7 N -0.248 5.248 8 N -0.303 5.303 9 C 0.122 3.878 10 C -0.278 4.278 11 C 0.592 3.408 12 O -0.535 6.535 13 N -0.701 5.701 14 C 0.130 3.870 15 H 0.090 0.910 16 C -0.188 4.188 17 C 0.164 3.836 18 H 0.065 0.935 19 N -0.704 5.704 20 C -0.241 4.241 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 C -0.169 4.169 29 C 0.135 3.865 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.210 0.790 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.378 0.622 41 H 0.256 0.744 42 H 0.070 0.930 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.705 6.371 6.572 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.163 6.163 3 C 0.106 3.894 4 C -0.233 4.233 5 C -0.142 4.142 6 C -0.061 4.061 7 N -0.014 5.014 8 N -0.125 5.125 9 C -0.058 4.058 10 C -0.293 4.293 11 C 0.379 3.621 12 O -0.413 6.413 13 N -0.354 5.354 14 C 0.025 3.975 15 H 0.108 0.892 16 C -0.230 4.230 17 C 0.052 3.948 18 H 0.083 0.917 19 N -0.344 5.344 20 C -0.371 4.371 21 H 0.092 0.908 22 C -0.206 4.206 23 N -0.582 5.582 24 Si 0.740 3.260 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.208 4.208 29 C 0.012 3.988 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.173 0.827 35 H 0.188 0.812 36 H 0.226 0.774 37 H 0.241 0.759 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.213 0.787 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.594 6.929 6.426 19.972 hybrid contribution 0.557 0.006 -0.725 0.914 sum -17.037 6.935 5.702 19.258 Atomic orbital electron populations 1.23166 0.78898 1.04444 1.00782 1.86646 1.20262 1.23123 1.86234 1.17980 0.88984 0.86539 0.95885 1.21182 1.00966 0.91338 1.09797 1.20518 0.92025 0.98782 1.02877 1.21383 0.91039 0.89136 1.04513 1.45949 1.06264 1.04241 1.44922 1.77712 0.85715 1.18418 1.30648 1.24403 0.99692 0.89771 0.91928 1.19876 0.90873 0.94051 1.24475 1.16840 0.84711 0.84327 0.76178 1.90800 1.23305 1.76537 1.50687 1.45585 1.09081 1.05803 1.74895 1.21668 0.98563 0.79435 0.97857 0.89219 1.24329 1.01110 0.99933 0.97619 1.21256 0.89680 0.92165 0.91693 0.91695 1.42207 1.39611 1.09246 1.43347 1.19329 1.09709 0.97095 1.11017 0.90837 1.24706 1.00109 0.95840 0.99988 1.69593 1.42859 1.01762 1.43984 0.86096 0.81384 0.77230 0.81327 1.20560 1.21904 1.21853 1.23863 0.97317 1.00142 0.99500 1.18281 0.90925 0.86768 1.02777 0.92769 0.87767 0.92797 0.83780 0.82676 0.81212 0.77354 0.75877 0.90630 0.91138 0.78660 0.93380 0.91126 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.82 101.05 0.99 1.20 16 2 O -0.25 -3.79 7.44 -42.96 -0.32 -4.11 16 3 C 0.16 2.23 6.70 -39.20 -0.26 1.97 16 4 C -0.21 -2.12 9.09 -39.37 -0.36 -2.48 16 5 C -0.12 -1.04 9.97 -39.97 -0.40 -1.43 16 6 C 0.06 0.70 11.17 -16.63 -0.19 0.51 16 7 N -0.25 -3.80 3.86 -10.44 -0.04 -3.84 16 8 N -0.30 -5.24 12.58 30.75 0.39 -4.85 16 9 C 0.12 2.14 11.44 -17.14 -0.20 1.94 16 10 C -0.28 -5.09 6.17 -104.69 -0.65 -5.73 16 11 C 0.59 11.51 7.78 -12.89 -0.10 11.41 16 12 O -0.54 -11.19 13.55 -18.37 -0.25 -11.44 16 13 N -0.70 -12.99 5.11 -54.35 -0.28 -13.26 16 14 C 0.13 2.28 4.29 -67.12 -0.29 1.99 16 15 H 0.09 1.55 7.50 -51.93 -0.39 1.16 16 16 C -0.19 -3.44 7.70 -25.78 -0.20 -3.63 16 17 C 0.16 3.21 4.57 -66.97 -0.31 2.90 16 18 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 19 N -0.70 -16.81 5.18 -52.50 -0.27 -17.08 16 20 C -0.24 -6.46 9.97 -15.06 -0.15 -6.61 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -26.53 13.06 55.49 0.72 -25.81 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C -0.17 -2.75 7.58 -25.92 -0.20 -2.94 16 29 C 0.14 2.26 6.77 -83.95 -0.57 1.70 16 30 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.38 7.69 -51.93 -0.40 -0.02 16 33 H 0.14 1.01 6.33 -52.49 -0.33 0.68 16 34 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.21 3.54 7.46 -52.49 -0.39 3.15 16 37 H 0.40 7.66 5.09 -40.82 -0.21 7.46 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.38 9.17 5.35 -40.82 -0.22 8.95 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -33.85 358.33 -7.89 -41.75 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -5.26 Total: 15.87 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.96 Total: 0.40 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: 0.52 Total: -64.84 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.57 Total: -15.56 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.85 -7.89 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022860302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.293 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds