Wall clock time and date at job start Tue Mar 31 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36016 * 116.99745 * 2 1 4 4 C 1.40508 * 119.89881 * 359.97438 * 3 2 1 5 5 C 1.36386 * 119.37928 * 180.02562 * 4 3 2 6 6 C 1.40088 * 119.34598 * 359.97438 * 5 4 3 7 7 C 1.40962 * 132.78201 * 180.02562 * 6 5 4 8 8 C 1.46541 * 126.58462 * 359.97438 * 7 6 5 9 9 O 1.21728 * 119.99905 * 359.71016 * 8 7 6 10 10 N 1.34772 * 120.00020 * 179.71657 * 8 7 6 11 11 C 1.46501 * 120.00042 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.90742 * 23.74973 * 11 10 8 13 13 C 1.53787 * 113.61128 * 154.99929 * 11 10 8 14 14 C 1.53784 * 87.07923 * 139.98386 * 13 11 10 15 15 H 1.09002 * 113.61478 * 89.11632 * 14 13 11 16 16 N 1.46497 * 113.61569 * 220.01663 * 14 13 11 17 17 C 1.36932 * 120.00479 * 205.00086 * 16 14 13 18 18 H 1.08003 * 119.99876 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00413 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00117 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99741 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47374 * 90.00346 * 21 19 17 23 23 H 1.48503 * 109.47109 * 210.00257 * 21 19 17 24 24 H 1.48501 * 109.47274 * 329.99929 * 21 19 17 25 25 C 1.53779 * 87.08045 * 334.56667 * 14 13 11 26 26 C 1.40512 * 106.83209 * 179.73556 * 7 6 5 27 27 N 1.30779 * 108.73419 * 0.25919 * 26 7 6 28 28 N 1.36498 * 120.31993 * 0.17806 * 6 5 4 29 29 C 1.35638 * 119.89456 * 180.41676 * 3 2 1 30 30 H 1.08994 * 109.47566 * 299.99868 * 1 2 3 31 31 H 1.08995 * 109.47095 * 60.00366 * 1 2 3 32 32 H 1.09007 * 109.46824 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.30950 * 0.04563 * 4 3 2 34 34 H 1.08000 * 120.32796 * 180.02562 * 5 4 3 35 35 H 0.97005 * 119.99829 * 359.97438 * 10 8 7 36 36 H 1.09004 * 113.61202 * 254.53139 * 13 11 10 37 37 H 1.08994 * 113.61447 * 25.43570 * 13 11 10 38 38 H 0.97009 * 119.99534 * 24.99936 * 16 14 13 39 39 H 0.96997 * 119.99679 * 179.97438 * 20 19 17 40 40 H 1.09006 * 113.61307 * 270.88660 * 25 14 13 41 41 H 1.08999 * 113.69146 * 139.99146 * 25 14 13 42 42 H 1.07994 * 125.63621 * 180.28293 * 26 7 6 43 43 H 1.08000 * 119.68522 * 359.45072 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2790 2.3890 -0.0005 5 6 1.9091 3.5985 -0.0011 6 6 3.3093 3.6432 -0.0005 7 6 4.2332 4.7078 -0.0004 8 6 3.9170 6.1387 -0.0013 9 8 2.7563 6.5055 -0.0077 10 7 4.9112 7.0486 0.0048 11 6 4.5951 8.4791 0.0032 12 1 3.6038 8.6949 0.4018 13 6 5.7056 9.3560 0.6055 14 6 5.4135 10.3619 -0.5205 15 1 4.6460 11.0925 -0.2650 16 7 6.6176 10.9743 -1.0872 17 6 6.5424 12.2007 -1.6917 18 1 5.5954 12.7167 -1.7502 19 6 7.6832 12.7808 -2.2292 20 7 7.6110 13.9598 -2.8098 21 14 9.3212 11.8886 -2.1274 22 1 9.4932 11.0309 -3.3273 23 1 10.4232 12.8823 -2.0671 24 1 9.3496 11.0436 -0.9066 25 6 4.8839 9.1724 -1.3387 26 6 5.5157 4.1336 0.0065 27 7 5.3929 2.8316 0.0046 28 7 4.0357 2.4876 -0.0031 29 6 3.4010 1.2805 -0.0086 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2003 2.3363 -0.0002 34 1 1.3344 4.5129 -0.0011 35 1 5.8362 6.7563 0.0101 36 1 5.4718 9.7344 1.6006 37 1 6.6973 8.9079 0.5442 38 1 7.4682 10.5110 -1.0343 39 1 8.4083 14.3653 -3.1850 40 1 5.6510 8.6741 -1.9314 41 1 3.9867 9.4013 -1.9138 42 1 6.4486 4.6776 0.0127 43 1 3.9827 0.3705 -0.0063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022860494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:30 Heat of formation + Delta-G solvation = 77.251620 kcal Electronic energy + Delta-G solvation = -26669.320163 eV Core-core repulsion = 22718.557929 eV Total energy + Delta-G solvation = -3950.762233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57596 -40.11853 -39.54864 -37.86075 -36.62846 -34.12905 -33.42550 -32.63613 -30.71365 -30.51958 -29.51523 -27.46648 -25.19412 -24.85695 -24.40817 -23.40932 -22.50344 -21.57831 -20.35387 -19.55664 -18.62861 -18.33491 -17.48011 -17.11374 -16.72727 -16.67910 -16.04439 -15.79480 -15.24035 -15.05055 -14.78397 -14.53607 -14.34266 -14.31943 -13.94767 -13.25469 -13.09682 -12.97909 -12.72045 -12.68348 -12.22851 -12.01854 -11.99650 -11.74259 -11.45130 -11.21571 -11.03567 -10.84009 -10.74854 -10.41277 -10.26194 -10.13742 -9.75324 -9.57401 -9.44355 -8.92851 -8.77666 -7.92548 -7.27417 -5.78386 -3.14180 0.11071 0.60818 1.47805 1.87832 2.72626 2.80107 3.33083 3.35904 3.38390 3.44479 3.46855 3.85734 3.95423 4.06921 4.35580 4.55519 4.57091 4.57316 4.61161 4.76781 4.88925 4.95128 5.03487 5.13442 5.16097 5.27734 5.43190 5.45359 5.53869 5.63815 5.70326 5.78894 5.96726 6.08836 6.14239 6.22912 6.24114 6.44224 6.57707 6.58039 6.69076 6.98632 7.05907 7.67163 7.98164 8.36465 8.41256 9.18688 9.91053 10.10586 11.39794 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.002041 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.665755 B =13715.108580 C =14277.716676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.092 3.908 4 C -0.146 4.146 5 C -0.061 4.061 6 C 0.138 3.862 7 C -0.299 4.299 8 C 0.598 3.402 9 O -0.556 6.556 10 N -0.711 5.711 11 C 0.122 3.878 12 H 0.113 0.887 13 C -0.162 4.162 14 C 0.174 3.826 15 H 0.088 0.912 16 N -0.735 5.735 17 C -0.248 4.248 18 H 0.092 0.908 19 C 0.004 3.996 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.176 4.176 26 C 0.112 3.888 27 N -0.309 5.309 28 N -0.241 5.241 29 C 0.057 3.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.152 0.848 34 H 0.169 0.831 35 H 0.396 0.604 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.201 0.799 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 -30.440 8.464 34.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.043 3.957 4 C -0.170 4.170 5 C -0.080 4.080 6 C 0.015 3.985 7 C -0.314 4.314 8 C 0.386 3.614 9 O -0.435 6.435 10 N -0.360 5.360 11 C 0.018 3.982 12 H 0.130 0.870 13 C -0.202 4.202 14 C 0.062 3.938 15 H 0.106 0.894 16 N -0.374 5.374 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.192 4.192 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.218 4.218 26 C -0.067 4.067 27 N -0.132 5.132 28 N -0.006 5.006 29 C -0.070 4.070 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.170 0.830 34 H 0.186 0.814 35 H 0.230 0.770 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.217 0.783 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.283 -31.188 8.361 34.915 hybrid contribution 1.169 0.069 -0.090 1.174 sum -12.114 -31.119 8.271 34.403 Atomic orbital electron populations 1.23181 0.77128 1.04675 1.01833 1.86072 1.22115 1.24533 1.89281 1.17871 0.90686 0.85680 1.01429 1.21593 1.01578 0.91325 1.02507 1.20804 0.90730 0.99721 0.96776 1.19300 0.92561 0.86400 1.00189 1.19773 0.91485 0.93414 1.26704 1.16844 0.85244 0.83739 0.75563 1.90748 1.19561 1.81360 1.51874 1.45756 1.08775 1.06446 1.75050 1.22454 0.99748 0.77306 0.98728 0.86957 1.23893 0.98137 0.97992 1.00181 1.21337 0.90402 0.91138 0.90889 0.89397 1.42701 1.05109 1.20984 1.68625 1.19151 0.96668 0.93214 1.28754 0.89031 1.24700 0.97468 0.96591 1.00393 1.69703 1.28600 1.16350 1.43318 0.86545 0.85111 0.79087 0.77726 1.21085 1.21730 1.20328 1.24304 1.01501 0.99412 0.96609 1.24107 0.98373 0.90815 0.93381 1.77669 0.88758 1.15531 1.31207 1.45611 1.06419 1.04394 1.44137 1.19977 0.91044 0.87935 1.08059 0.92159 0.92144 0.87542 0.83014 0.81380 0.76951 0.91144 0.90209 0.80490 0.93034 0.90325 0.91787 0.78286 0.80456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 9.81 101.05 0.99 1.06 16 2 O -0.31 -1.90 10.48 -19.79 -0.21 -2.11 16 3 C 0.09 0.68 6.63 -39.66 -0.26 0.42 16 4 C -0.15 -1.00 9.04 -39.39 -0.36 -1.36 16 5 C -0.06 -0.58 9.72 -39.56 -0.38 -0.97 16 6 C 0.14 1.61 6.76 -84.06 -0.57 1.05 16 7 C -0.30 -3.67 6.17 -104.66 -0.65 -4.31 16 8 C 0.60 8.34 7.78 -12.92 -0.10 8.24 16 9 O -0.56 -9.28 15.30 5.16 0.08 -9.21 16 10 N -0.71 -8.86 5.34 -54.36 -0.29 -9.16 16 11 C 0.12 1.74 4.24 -67.12 -0.28 1.45 16 12 H 0.11 1.67 7.46 -51.93 -0.39 1.29 16 13 C -0.16 -2.35 7.58 -25.91 -0.20 -2.55 16 14 C 0.17 3.22 4.48 -67.12 -0.30 2.92 16 15 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 16 N -0.73 -16.91 5.20 -52.64 -0.27 -17.18 16 17 C -0.25 -6.91 10.45 -15.06 -0.16 -7.07 16 18 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -29.14 13.97 55.49 0.78 -28.37 16 21 Si 0.88 21.81 27.73 -169.99 -4.71 17.10 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 25 C -0.18 -2.93 7.68 -25.92 -0.20 -3.13 16 26 C 0.11 1.17 11.44 -17.14 -0.20 0.98 16 27 N -0.31 -3.62 12.58 30.75 0.39 -3.24 16 28 N -0.24 -2.68 3.86 -10.40 -0.04 -2.72 16 29 C 0.06 0.49 11.10 -16.46 -0.18 0.31 16 30 H 0.06 0.10 7.67 -51.93 -0.40 -0.30 16 31 H 0.06 0.11 7.67 -51.93 -0.40 -0.29 16 32 H 0.11 0.09 8.14 -51.92 -0.42 -0.33 16 33 H 0.15 0.56 6.36 -52.49 -0.33 0.23 16 34 H 0.17 1.63 7.10 -52.49 -0.37 1.26 16 35 H 0.40 3.90 7.65 -40.82 -0.31 3.59 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 38 H 0.36 8.11 5.79 -40.82 -0.24 7.88 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.20 1.34 7.46 -52.49 -0.39 0.95 16 43 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -35.92 363.93 -7.12 -43.03 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.38 Total: 9.30 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.94 Total: -2.94 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.56 Total: -60.66 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.13 Total: -11.32 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.92 -7.12 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022860494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.285 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds