Wall clock time and date at job start Tue Mar 31 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36444 * 126.32219 * 2 1 4 4 O 1.35277 * 125.01778 * 0.07541 * 3 2 1 5 5 N 1.30717 * 109.96798 * 180.02562 * 3 2 1 6 6 C 1.35982 * 109.53740 * 0.02562 * 5 3 2 7 7 C 1.39346 * 133.40434 * 180.02562 * 6 5 3 8 8 C 1.39208 * 119.51584 * 180.02562 * 7 6 5 9 9 C 1.47671 * 119.91344 * 179.97438 * 8 7 6 10 10 O 1.21578 * 119.99725 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99743 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99502 * 179.97438 * 11 9 8 13 13 H 1.09003 * 112.84785 * 46.31307 * 12 11 9 14 14 C 1.53786 * 113.61043 * 177.61693 * 12 11 9 15 15 C 1.53781 * 87.08035 * 89.12128 * 14 12 11 16 16 H 1.09002 * 113.61619 * 139.97979 * 15 14 12 17 17 N 1.46505 * 113.60976 * 270.88138 * 15 14 12 18 18 C 1.36934 * 120.00086 * 255.08254 * 17 15 14 19 19 H 1.08002 * 119.99685 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00251 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99569 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46955 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47063 * 120.00090 * 22 20 18 25 25 H 1.48496 * 109.46552 * 239.99828 * 22 20 18 26 26 C 1.53780 * 113.61787 * 275.11496 * 12 11 9 27 27 C 1.40074 * 120.17288 * 0.26454 * 8 7 6 28 28 C 1.36524 * 120.43295 * 359.44851 * 27 8 7 29 29 C 1.38129 * 126.32277 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47073 * 89.97082 * 1 2 3 31 31 H 1.08998 * 109.47086 * 209.97721 * 1 2 3 32 32 H 1.09004 * 109.46932 * 329.97681 * 1 2 3 33 33 H 0.96697 * 113.99391 * 269.98288 * 4 3 2 34 34 H 1.07994 * 120.23952 * 0.02562 * 7 6 5 35 35 H 0.96991 * 120.00423 * 359.97438 * 11 9 8 36 36 H 1.09002 * 113.61258 * 203.66838 * 14 12 11 37 37 H 1.08994 * 113.61479 * 334.48185 * 14 12 11 38 38 H 0.96998 * 119.99818 * 75.08880 * 17 15 14 39 39 H 0.97003 * 119.99825 * 180.02562 * 21 20 18 40 40 H 1.09004 * 113.61233 * 25.43294 * 26 12 11 41 41 H 1.08997 * 113.61525 * 156.33944 * 26 12 11 42 42 H 1.07999 * 119.78332 * 179.70366 * 27 8 7 43 43 H 1.07997 * 119.91637 * 180.25435 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2732 1.0993 0.0000 4 8 1.8404 2.3810 0.0015 5 7 3.5275 0.7313 -0.0005 6 6 3.6030 -0.6265 -0.0015 7 6 4.6670 -1.5263 -0.0019 8 6 4.4084 -2.8941 -0.0035 9 6 5.5293 -3.8555 -0.0045 10 8 6.6762 -3.4520 -0.0045 11 7 5.2809 -5.1802 -0.0055 12 6 6.3930 -6.1339 -0.0071 13 1 7.1664 -5.8834 0.7189 14 6 5.9440 -7.6036 0.0505 15 6 5.9018 -7.5690 -1.4864 16 1 6.2788 -8.4785 -1.9542 17 7 4.6092 -7.1425 -2.0284 18 6 3.7603 -8.0645 -2.5801 19 1 4.0436 -9.1062 -2.6153 20 6 2.5358 -7.6604 -3.0941 21 7 2.1906 -6.3911 -3.0507 22 14 1.3776 -8.9183 -3.8462 23 1 1.9958 -10.2665 -3.7727 24 1 0.0950 -8.9199 -3.0977 25 1 1.1214 -8.5683 -5.2664 26 6 6.9415 -6.4384 -1.4112 27 6 3.0878 -3.3610 -0.0103 28 6 2.0434 -2.4816 -0.0040 29 6 2.2832 -1.1129 -0.0005 30 1 -0.3633 0.0005 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5142 33 1 1.7139 2.7543 -0.8815 34 1 5.6847 -1.1651 -0.0010 35 1 4.3660 -5.5020 -0.0052 36 1 6.7022 -8.2764 0.4513 37 1 4.9669 -7.7439 0.5125 38 1 4.3548 -6.2071 -1.9964 39 1 1.3347 -6.1087 -3.4096 40 1 6.7688 -5.6378 -2.1305 41 1 7.9723 -6.7925 -1.4099 42 1 2.8944 -4.4235 -0.0163 43 1 1.0285 -2.8508 -0.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023135233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:46 Heat of formation + Delta-G solvation = 48.984563 kcal Electronic energy + Delta-G solvation = -27865.750864 eV Core-core repulsion = 23913.762879 eV Total energy + Delta-G solvation = -3951.987985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30673 -39.95148 -38.43436 -37.68790 -36.20869 -34.49121 -33.66587 -32.58998 -30.60001 -29.93799 -28.93588 -27.32959 -25.17458 -24.70011 -23.82192 -22.79531 -22.26135 -20.93906 -20.27513 -18.93343 -18.66492 -17.90692 -17.25242 -17.20891 -16.65364 -15.77151 -15.59536 -14.98663 -14.90455 -14.70942 -14.24484 -14.08491 -14.03296 -13.81533 -13.34792 -13.25858 -13.07639 -12.99768 -12.81614 -12.39181 -11.95931 -11.81216 -11.48830 -11.36217 -11.31009 -10.95111 -10.82262 -10.54932 -10.33774 -10.18981 -10.10523 -9.85873 -9.61655 -9.47665 -9.00375 -8.57093 -8.30645 -8.15682 -7.07340 -5.88023 -3.16768 0.83226 1.07192 2.03856 2.48499 3.13910 3.33870 3.35826 3.43234 3.44214 3.61874 4.04779 4.28675 4.42575 4.50214 4.83160 4.86002 5.02483 5.09884 5.11562 5.18982 5.25030 5.30988 5.42349 5.45495 5.53170 5.59157 5.84042 5.94502 6.03364 6.17928 6.18380 6.29411 6.40023 6.42787 6.43775 6.45174 6.62327 6.69825 6.72134 6.84238 7.12242 7.26909 7.61109 7.64576 7.95626 8.31382 8.60901 9.42781 9.99310 10.35001 11.34039 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.003626 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.212951 B = 7720.579252 C = 9792.100240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.495 5.495 3 C 0.440 3.560 4 O -0.443 6.443 5 N -0.477 5.477 6 C 0.041 3.959 7 C 0.003 3.997 8 C -0.137 4.137 9 C 0.565 3.435 10 O -0.546 6.546 11 N -0.697 5.697 12 C 0.128 3.872 13 H 0.081 0.919 14 C -0.179 4.179 15 C 0.164 3.836 16 H 0.063 0.937 17 N -0.707 5.707 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.168 4.168 27 C -0.050 4.050 28 C -0.111 4.111 29 C 0.078 3.922 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.408 0.592 34 H 0.145 0.855 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.144 0.856 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 11.139 7.505 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.198 5.198 3 C 0.137 3.863 4 O -0.244 6.244 5 N -0.207 5.207 6 C -0.076 4.076 7 C -0.018 4.018 8 C -0.142 4.142 9 C 0.352 3.648 10 O -0.425 6.425 11 N -0.349 5.349 12 C 0.023 3.977 13 H 0.099 0.901 14 C -0.220 4.220 15 C 0.052 3.948 16 H 0.081 0.919 17 N -0.347 5.347 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.208 4.208 27 C -0.070 4.070 28 C -0.132 4.132 29 C -0.032 4.032 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.266 0.734 34 H 0.162 0.838 35 H 0.247 0.753 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.161 0.839 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.042 11.867 8.013 14.464 hybrid contribution -2.267 -0.700 -1.033 2.588 sum -4.309 11.167 6.980 13.856 Atomic orbital electron populations 1.22012 0.75917 1.04972 1.03734 1.45528 1.07513 1.05218 1.61495 1.20318 0.84072 0.81159 1.00709 1.84792 1.86456 1.18638 1.34511 1.70671 1.15433 1.11534 1.23107 1.18561 0.92135 0.89107 1.07798 1.20303 0.98170 0.89793 0.93510 1.19655 0.93534 0.93138 1.07905 1.18007 0.88236 0.82318 0.76189 1.90738 1.22094 1.79011 1.50675 1.45713 1.10561 1.04869 1.73764 1.21721 0.88991 0.89016 0.97945 0.90098 1.24141 1.01504 0.93727 1.02651 1.21192 0.87140 0.95442 0.91056 0.91864 1.42286 1.14496 1.08348 1.69558 1.19350 0.96575 0.90301 1.31016 0.90911 1.24724 0.98102 0.96155 1.01689 1.69662 1.22744 1.13774 1.51679 0.86123 0.80875 0.80520 0.78689 1.20540 1.21908 1.21928 1.23842 0.99315 1.00558 0.97074 1.20906 0.90661 1.00359 0.95121 1.19567 1.00342 0.87971 1.05297 1.18833 0.90643 0.88936 1.04744 0.90478 0.89287 0.89246 0.73447 0.83765 0.75328 0.89851 0.90893 0.77936 0.93547 0.91223 0.89746 0.83886 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.11 59.85 0.66 1.19 16 2 N -0.50 -5.68 3.22 -123.30 -0.40 -6.07 16 3 C 0.44 5.46 8.98 -88.90 -0.80 4.67 16 4 O -0.44 -3.88 13.51 -17.52 -0.24 -4.12 16 5 N -0.48 -7.42 11.31 -12.25 -0.14 -7.56 16 6 C 0.04 0.66 7.21 -84.70 -0.61 0.05 16 7 C 0.00 0.04 9.64 -38.81 -0.37 -0.33 16 8 C -0.14 -2.25 5.87 -105.00 -0.62 -2.86 16 9 C 0.57 10.20 7.76 -12.41 -0.10 10.10 16 10 O -0.55 -11.16 16.26 5.30 0.09 -11.07 16 11 N -0.70 -11.91 4.28 -54.01 -0.23 -12.14 16 12 C 0.13 2.12 4.00 -67.11 -0.27 1.85 16 13 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 14 C -0.18 -2.86 7.57 -25.92 -0.20 -3.05 16 15 C 0.16 3.12 4.55 -67.11 -0.31 2.81 16 16 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 17 N -0.71 -16.50 5.02 -52.63 -0.26 -16.76 16 18 C -0.24 -6.27 9.97 -15.06 -0.15 -6.42 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -25.70 13.06 55.49 0.72 -24.97 16 22 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C -0.17 -2.92 7.62 -25.92 -0.20 -3.11 16 27 C -0.05 -0.76 9.47 -39.51 -0.37 -1.13 16 28 C -0.11 -1.51 9.96 -39.93 -0.40 -1.91 16 29 C 0.08 1.09 6.87 -83.85 -0.58 0.52 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.41 1.39 9.06 45.56 0.41 1.80 16 34 H 0.14 2.35 7.63 -52.49 -0.40 1.95 16 35 H 0.41 6.97 5.83 -40.82 -0.24 6.74 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 38 H 0.39 9.40 6.36 -40.82 -0.26 9.14 16 39 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.14 2.14 6.36 -52.49 -0.33 1.81 16 43 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -33.53 366.21 -8.94 -42.47 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -4.59 Total: 16.57 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -4.39 Total: 1.98 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -0.31 Total: -67.50 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.15 Total: -15.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.53 -8.94 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023135233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.455 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds