Wall clock time and date at job start Tue Mar 31 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35894 * 117.00243 * 2 1 4 4 C 1.36888 * 120.41569 * 0.02562 * 3 2 1 5 5 C 1.40114 * 119.35776 * 180.02562 * 4 3 2 6 6 C 1.35173 * 120.37113 * 359.97438 * 5 4 3 7 7 N 1.36362 * 120.81151 * 359.97438 * 6 5 4 8 8 N 1.40022 * 131.98958 * 180.02562 * 7 6 5 9 9 C 1.30769 * 109.58929 * 179.71204 * 8 7 6 10 10 C 1.40523 * 108.72481 * 0.45259 * 9 8 7 11 11 C 1.46596 * 126.57784 * 179.81384 * 10 9 8 12 12 O 1.21722 * 119.99811 * 179.68250 * 11 10 9 13 13 N 1.34770 * 119.99947 * 359.69345 * 11 10 9 14 14 C 1.46503 * 120.00240 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47469 * 179.97438 * 14 13 11 16 16 C 1.53496 * 114.20755 * 174.99706 * 15 14 13 17 17 N 1.47062 * 87.98485 * 87.71788 * 16 15 14 18 18 C 1.36939 * 136.05593 * 207.08750 * 17 16 15 19 19 H 1.08008 * 119.99868 * 7.82597 * 18 17 16 20 20 C 1.38808 * 120.00203 * 187.82575 * 18 17 16 21 21 N 1.31618 * 119.99998 * 195.17052 * 20 18 17 22 22 Si 1.86797 * 119.99840 * 15.16580 * 20 18 17 23 23 H 1.48503 * 109.47450 * 270.00422 * 22 20 18 24 24 H 1.48503 * 109.47360 * 30.00092 * 22 20 18 25 25 H 1.48498 * 109.47360 * 150.00270 * 22 20 18 26 26 C 1.47059 * 87.88616 * 27.34176 * 17 16 15 27 27 C 1.36492 * 120.10394 * 0.02562 * 7 6 5 28 28 H 1.08993 * 109.47552 * 299.99983 * 1 2 3 29 29 H 1.09005 * 109.46608 * 60.00181 * 1 2 3 30 30 H 1.09003 * 109.47273 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.32904 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.81622 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.59395 * 179.97438 * 6 5 4 34 34 H 1.08001 * 125.63807 * 180.29797 * 9 8 7 35 35 H 0.97003 * 120.00395 * 359.97438 * 13 11 10 36 36 H 1.08997 * 109.46977 * 59.98882 * 14 13 11 37 37 H 1.09006 * 109.46552 * 299.99228 * 14 13 11 38 38 H 1.09003 * 113.27809 * 41.92931 * 15 14 13 39 39 H 1.09008 * 113.46447 * 332.93223 * 16 15 14 40 40 H 1.08996 * 113.51824 * 202.51032 * 16 15 14 41 41 H 0.96995 * 120.00365 * 354.90363 * 21 20 18 42 42 H 1.08997 * 113.47135 * 87.43718 * 26 17 16 43 43 H 1.09007 * 113.47198 * 217.88025 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.3089 2.3643 0.0005 5 6 1.9680 3.6007 0.0000 6 6 3.3186 3.6552 -0.0006 7 7 4.0637 2.5132 0.0000 8 7 5.4472 2.2973 0.0001 9 6 5.6905 1.0125 0.0069 10 6 4.4668 0.3216 0.0010 11 6 4.2849 -1.1330 0.0017 12 8 3.1633 -1.6061 0.0020 13 7 5.3594 -1.9465 0.0021 14 6 5.1776 -3.4002 0.0022 15 6 6.5456 -4.0853 0.0021 16 6 6.4839 -5.6142 0.1243 17 7 6.3701 -5.6747 -1.3407 18 6 5.8264 -6.5397 -2.2525 19 1 5.2232 -7.3701 -1.9161 20 6 6.0506 -6.3494 -3.6091 21 7 5.3058 -6.9781 -4.4937 22 14 7.4091 -5.2010 -4.1791 23 1 6.8655 -3.8273 -4.3294 24 1 8.5040 -5.1930 -3.1759 25 1 7.9379 -5.6697 -5.4852 26 6 7.1027 -4.4008 -1.3958 27 6 3.4488 1.2946 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2297 2.3218 0.0005 32 1 1.3937 4.5153 0.0000 33 1 3.8136 4.6150 -0.0014 34 1 6.6700 0.5575 0.0131 35 1 6.2532 -1.5696 0.0017 36 1 4.6228 -3.6970 -0.8878 37 1 4.6224 -3.6969 0.8922 38 1 7.2644 -3.6121 0.6711 39 1 5.5953 -5.9726 0.6440 40 1 7.4032 -6.0574 0.5070 41 1 4.6502 -7.6299 -4.2002 42 1 8.1856 -4.5232 -1.4140 43 1 6.7413 -3.7253 -2.1713 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032055977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:13 Heat of formation + Delta-G solvation = 108.171003 kcal Electronic energy + Delta-G solvation = -27840.387875 eV Core-core repulsion = 23890.966407 eV Total energy + Delta-G solvation = -3949.421468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.45835 -39.47942 -39.24675 -38.26286 -36.80872 -34.16046 -32.46486 -32.25230 -31.22677 -29.49794 -28.34799 -27.68662 -25.90544 -25.22410 -23.70429 -23.30467 -22.35034 -21.70224 -20.19821 -19.16576 -18.26200 -17.88573 -17.36246 -16.89653 -16.48919 -16.44917 -15.76544 -15.62889 -15.38742 -15.13062 -14.68615 -14.56971 -14.20493 -13.76873 -13.69044 -13.29333 -13.14829 -12.90213 -12.60709 -12.51421 -12.30425 -11.67673 -11.60204 -11.53687 -11.47755 -11.31116 -10.96284 -10.70893 -10.35906 -10.02739 -9.93496 -9.70698 -9.52917 -9.41036 -9.11148 -8.63784 -8.62667 -7.66255 -7.11023 -6.23460 -3.14927 0.37382 0.71099 1.75014 2.02589 2.91618 3.01079 3.46267 3.46437 3.52129 3.66853 3.70952 4.00972 4.16835 4.35160 4.48055 4.65676 4.78318 4.85545 4.89177 4.94849 4.95820 5.05673 5.08575 5.25239 5.36432 5.39242 5.48519 5.54349 5.68410 5.77594 5.84317 6.03655 6.08689 6.24797 6.31518 6.40914 6.45602 6.45993 6.55430 6.77948 6.98174 6.99832 7.19144 7.21011 7.87213 8.31278 8.64291 9.04803 9.58454 10.45052 11.26696 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.003019 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.292737 B = 9272.707874 C = 9705.927088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.253 6.253 3 C 0.157 3.843 4 C -0.208 4.208 5 C -0.112 4.112 6 C 0.058 3.942 7 N -0.244 5.244 8 N -0.308 5.308 9 C 0.107 3.893 10 C -0.277 4.277 11 C 0.585 3.415 12 O -0.521 6.521 13 N -0.726 5.726 14 C 0.152 3.848 15 C -0.145 4.145 16 C 0.127 3.873 17 N -0.624 5.624 18 C -0.303 4.303 19 H 0.081 0.919 20 C -0.025 4.025 21 N -0.934 5.934 22 Si 1.062 2.938 23 H -0.294 1.294 24 H -0.282 1.282 25 H -0.297 1.297 26 C 0.104 3.896 27 C 0.138 3.862 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.201 0.799 35 H 0.393 0.607 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.261 0.739 42 H 0.046 0.954 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 24.170 13.272 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.162 6.162 3 C 0.108 3.892 4 C -0.232 4.232 5 C -0.134 4.134 6 C -0.067 4.067 7 N -0.010 5.010 8 N -0.130 5.130 9 C -0.072 4.072 10 C -0.292 4.292 11 C 0.371 3.629 12 O -0.398 6.398 13 N -0.377 5.377 14 C 0.029 3.971 15 C -0.165 4.165 16 C 0.000 4.000 17 N -0.352 5.352 18 C -0.429 4.429 19 H 0.099 0.901 20 C -0.224 4.224 21 N -0.576 5.576 22 Si 0.894 3.106 23 H -0.221 1.221 24 H -0.208 1.208 25 H -0.224 1.224 26 C -0.022 4.022 27 C 0.015 3.985 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.126 0.874 31 H 0.165 0.835 32 H 0.176 0.824 33 H 0.189 0.811 34 H 0.218 0.782 35 H 0.227 0.773 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.112 25.204 11.741 28.271 hybrid contribution -0.625 -1.181 1.282 1.851 sum -5.738 24.023 13.023 27.922 Atomic orbital electron populations 1.23219 0.78419 1.04855 1.00862 1.86656 1.20676 1.22923 1.85929 1.18019 0.88987 0.86756 0.95484 1.21251 1.01262 0.91272 1.09370 1.20586 0.92021 0.98918 1.01836 1.21387 0.91053 0.88974 1.05269 1.45827 1.05973 1.04383 1.44811 1.77609 0.86418 1.18171 1.30804 1.24089 0.99142 0.90031 0.93932 1.19889 0.90834 0.94111 1.24373 1.16849 0.84879 0.84218 0.76928 1.90876 1.23193 1.76382 1.49309 1.45771 1.08387 1.07214 1.76372 1.20978 0.96025 0.77138 1.02932 1.23167 0.96350 0.97763 0.99222 1.22329 0.98709 0.91123 0.87844 1.46254 1.64358 1.22993 1.01595 1.20132 1.26482 1.09147 0.87169 0.90111 1.25747 1.02479 1.03077 0.91057 1.70889 1.23510 1.28274 1.34925 0.83776 0.76397 0.75239 0.75193 1.22135 1.20845 1.22411 1.22762 0.95704 0.89188 0.94499 1.18302 0.91088 0.86584 1.02516 0.92668 0.92567 0.87445 0.83514 0.82446 0.81106 0.78222 0.77322 0.89990 0.91734 0.90380 0.93467 0.94382 0.92892 0.93700 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.82 101.05 0.99 1.18 16 2 O -0.25 -3.56 7.44 -42.95 -0.32 -3.88 16 3 C 0.16 1.98 6.70 -39.21 -0.26 1.72 16 4 C -0.21 -1.76 9.09 -39.37 -0.36 -2.12 16 5 C -0.11 -0.73 9.98 -39.97 -0.40 -1.13 16 6 C 0.06 0.47 11.17 -16.63 -0.19 0.29 16 7 N -0.24 -2.93 3.86 -10.44 -0.04 -2.97 16 8 N -0.31 -3.84 12.58 30.75 0.39 -3.45 16 9 C 0.11 1.25 11.44 -17.14 -0.20 1.05 16 10 C -0.28 -4.01 6.17 -104.69 -0.65 -4.66 16 11 C 0.58 9.78 7.78 -12.89 -0.10 9.68 16 12 O -0.52 -10.49 13.93 -18.38 -0.26 -10.74 16 13 N -0.73 -10.73 5.55 -61.64 -0.34 -11.07 16 14 C 0.15 2.63 5.52 -4.04 -0.02 2.61 16 15 C -0.15 -2.40 4.17 -89.97 -0.37 -2.78 16 16 C 0.13 2.46 8.25 -8.52 -0.07 2.39 16 17 N -0.62 -15.42 3.46 -184.63 -0.64 -16.05 16 18 C -0.30 -8.89 11.03 -15.06 -0.17 -9.06 16 19 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 20 C -0.02 -0.75 5.50 -17.43 -0.10 -0.84 16 21 N -0.93 -30.20 13.70 55.49 0.76 -29.44 16 22 Si 1.06 27.21 25.50 -169.99 -4.34 22.88 16 23 H -0.29 -7.30 6.97 56.52 0.39 -6.90 16 24 H -0.28 -6.62 5.66 56.52 0.32 -6.30 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 C 0.10 2.16 5.13 -8.39 -0.04 2.11 16 27 C 0.14 1.93 6.77 -83.95 -0.57 1.36 16 28 H 0.05 0.36 7.68 -51.93 -0.40 -0.04 16 29 H 0.06 0.39 7.68 -51.93 -0.40 0.00 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.15 0.84 6.33 -52.49 -0.33 0.51 16 32 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.20 1.52 7.46 -52.49 -0.39 1.13 16 35 H 0.39 4.46 7.39 -40.82 -0.30 4.16 16 36 H 0.08 1.77 7.93 -51.93 -0.41 1.36 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.90 8.12 -51.92 -0.42 0.48 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.26 8.34 8.73 -40.82 -0.36 7.98 16 42 H 0.05 0.90 7.02 -51.93 -0.36 0.54 16 43 H 0.05 1.14 6.21 -51.93 -0.32 0.82 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -39.11 355.56 -7.47 -46.57 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.54 Total: 1.00 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.50 Total: 1.80 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.13 Total: -62.99 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.58 Total: -14.62 kcal Atomic # 14 Polarization: 27.21 SS G_CDS: -4.34 Total: 22.88 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.11 -7.47 -46.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032055977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.746 kcal (2) G-P(sol) polarization free energy of solvation -39.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds