Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34660 * 125.80655 * 2 1 4 4 C 1.37861 * 107.39788 * 180.24776 * 3 2 1 5 5 C 1.47681 * 126.37317 * 179.73940 * 4 3 2 6 6 C 1.36603 * 125.65311 * 179.97438 * 5 4 3 7 7 C 1.39763 * 107.12578 * 179.97438 * 6 5 4 8 8 C 1.37854 * 106.77955 * 0.02562 * 7 6 5 9 9 C 1.46300 * 125.96955 * 180.02562 * 8 7 6 10 10 O 1.21745 * 120.00064 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00058 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00234 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47227 * 180.02562 * 12 11 9 14 14 C 1.53946 * 113.74231 * 273.74146 * 13 12 11 15 15 N 1.47814 * 86.03830 * 222.08494 * 14 13 12 16 16 C 1.36937 * 134.45942 * 204.64759 * 15 14 13 17 17 H 1.07992 * 119.99993 * 179.85957 * 16 15 14 18 18 C 1.38809 * 119.99676 * 359.85970 * 16 15 14 19 19 N 1.31627 * 120.00335 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46930 * 90.00188 * 20 18 16 22 22 H 1.48497 * 109.47444 * 210.00255 * 20 18 16 23 23 H 1.48498 * 109.47080 * 330.00273 * 20 18 16 24 24 C 1.47580 * 91.05048 * 24.54490 * 15 14 13 25 25 O 1.34326 * 125.64957 * 359.69060 * 5 4 3 26 26 C 1.41171 * 107.25299 * 359.58096 * 4 3 2 27 27 N 1.30547 * 108.09580 * 0.42526 * 26 4 3 28 28 H 1.09000 * 109.47108 * 89.99773 * 1 2 3 29 29 H 1.08995 * 109.46998 * 210.00091 * 1 2 3 30 30 H 1.08998 * 109.46526 * 330.00137 * 1 2 3 31 31 H 1.08002 * 126.29742 * 359.97438 * 3 2 1 32 32 H 1.08003 * 126.43542 * 359.94350 * 6 5 4 33 33 H 1.08005 * 126.61663 * 179.97438 * 7 6 5 34 34 H 0.96999 * 120.00049 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.46581 * 299.99968 * 12 11 9 36 36 H 1.08990 * 109.47126 * 60.00032 * 12 11 9 37 37 H 1.09003 * 112.94589 * 45.32952 * 13 12 11 38 38 H 1.09003 * 113.76479 * 336.34878 * 14 13 12 39 39 H 1.08997 * 113.76933 * 107.74438 * 14 13 12 40 40 H 0.96998 * 119.99978 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.77327 * 221.15421 * 24 15 14 42 42 H 1.08999 * 113.76916 * 89.75523 * 24 15 14 43 43 H 1.07991 * 125.95389 * 180.14115 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2529 1.0921 0.0000 4 6 3.5609 0.6567 -0.0057 5 6 4.7674 1.5084 -0.0132 6 6 6.0580 1.0608 -0.0183 7 6 6.8845 2.1878 -0.0252 8 6 6.0555 3.2893 -0.0234 9 6 6.4848 4.6879 -0.0294 10 8 7.6713 4.9604 -0.0371 11 7 5.5667 5.6746 -0.0273 12 6 5.9966 7.0751 -0.0328 13 6 4.7673 7.9859 -0.0284 14 6 4.2072 8.2778 -1.4324 15 7 4.0456 9.6712 -0.9662 16 6 3.2344 10.7145 -1.3247 17 1 3.3134 11.6612 -0.8111 18 6 2.3105 10.5553 -2.3484 19 7 2.2139 9.4013 -2.9742 20 14 1.2043 11.9787 -2.8381 21 1 1.8683 12.7798 -3.8976 22 1 -0.0847 11.4499 -3.3520 23 1 0.9500 12.8380 -1.6540 24 6 5.1072 9.4857 0.0420 25 8 4.7775 2.8516 -0.0215 26 6 3.5325 -0.7547 0.0007 27 7 2.2837 -1.1351 0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.9210 2.1199 -0.0004 32 1 6.3793 0.0297 -0.0167 33 1 7.9645 2.1947 -0.0300 34 1 4.6214 5.4575 -0.0215 35 1 6.5986 7.2738 0.8539 36 1 6.5901 7.2695 -0.9260 37 1 4.0095 7.6735 0.6901 38 1 4.9408 8.1638 -2.2304 39 1 3.2651 7.7719 -1.6434 40 1 1.5680 9.2900 -3.6893 41 1 4.8825 9.9424 1.0059 42 1 6.1058 9.7273 -0.3220 43 1 4.3937 -1.4062 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032117463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = 115.310061 kcal Electronic energy + Delta-G solvation = -26533.858753 eV Core-core repulsion = 22584.746858 eV Total energy + Delta-G solvation = -3949.111895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.68464 -41.43938 -39.38659 -37.93391 -34.55275 -34.06383 -33.03060 -32.21041 -31.68695 -29.59222 -28.59603 -27.09147 -25.78176 -24.80151 -23.43783 -22.47284 -21.87190 -21.05981 -20.74221 -20.19604 -19.27370 -18.21993 -17.38853 -16.72319 -16.50852 -15.91397 -15.84922 -15.69203 -15.13300 -14.86916 -14.65862 -14.40066 -13.86009 -13.59906 -13.35712 -13.31601 -13.22698 -13.09869 -13.08935 -12.85150 -12.43862 -12.35233 -11.43329 -11.34469 -11.31225 -11.01832 -10.73881 -10.62237 -10.30128 -10.25636 -9.96676 -9.84563 -9.78334 -9.76708 -9.45502 -8.90602 -8.81275 -7.92453 -6.89371 -5.78419 -3.10564 0.69384 1.44836 1.94385 1.94736 2.51923 2.86312 3.25124 3.31849 3.37720 3.42626 3.44233 3.95511 4.40080 4.43760 4.52957 4.66332 4.70077 4.78967 4.92092 4.96924 5.13284 5.13888 5.19376 5.29542 5.34707 5.56274 5.62683 5.69892 5.78097 5.82136 6.01585 6.05304 6.22016 6.26906 6.33373 6.40356 6.50064 6.61173 6.70659 6.79337 7.17131 7.20542 7.33904 7.53291 7.60035 7.96415 8.18876 9.03118 9.69344 10.58386 11.38702 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.002575 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.066335 B =10872.856025 C =13157.854934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.365 5.365 3 C 0.093 3.907 4 C -0.189 4.189 5 C 0.112 3.888 6 C -0.219 4.219 7 C -0.111 4.111 8 C -0.083 4.083 9 C 0.600 3.400 10 O -0.528 6.528 11 N -0.710 5.710 12 C 0.129 3.871 13 C -0.154 4.154 14 C 0.168 3.832 15 N -0.613 5.613 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.129 3.871 25 O -0.159 6.159 26 C 0.086 3.914 27 N -0.296 5.296 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.188 0.812 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -21.939 8.046 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.144 5.144 3 C -0.057 4.057 4 C -0.200 4.200 5 C 0.058 3.942 6 C -0.238 4.238 7 C -0.132 4.132 8 C -0.135 4.135 9 C 0.386 3.614 10 O -0.407 6.407 11 N -0.360 5.360 12 C 0.005 3.995 13 C -0.174 4.174 14 C 0.043 3.957 15 N -0.339 5.339 16 C -0.350 4.350 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.002 3.998 25 O -0.054 6.054 26 C -0.101 4.101 27 N -0.116 5.116 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.205 0.795 32 H 0.173 0.827 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.118 -22.332 7.852 23.673 hybrid contribution -0.395 1.339 -0.506 1.485 sum -0.513 -20.994 7.346 22.248 Atomic orbital electron populations 1.22025 0.73189 1.05089 1.04116 1.48382 1.07257 1.03671 1.55063 1.23150 0.90268 0.93982 0.98251 1.17996 0.89183 0.91940 1.20919 1.19716 0.93317 0.79587 1.01605 1.21525 0.90880 1.00270 1.11158 1.22031 1.00941 0.90080 1.00149 1.22361 0.80902 0.95075 1.15197 1.16461 0.85822 0.81821 0.77261 1.90881 1.15984 1.82313 1.51560 1.45978 1.09920 1.06673 1.73399 1.21543 0.97601 0.78195 1.02127 1.23815 0.96155 0.95104 1.02293 1.22359 0.98247 0.85192 0.89884 1.45990 1.37944 1.10746 1.39264 1.19033 1.10725 0.90941 1.14260 0.90242 1.24783 0.99904 0.97382 0.98476 1.69818 1.38213 1.22856 1.26031 0.86121 0.79949 0.81321 0.78380 1.21615 1.21657 1.20629 1.22486 0.92654 0.91007 0.93617 1.84068 1.29098 1.21315 1.70965 1.23889 0.95298 0.92818 0.98088 1.77241 1.01498 1.08062 1.24782 0.90049 0.88855 0.88803 0.79519 0.82667 0.82154 0.75905 0.91535 0.90990 0.89162 0.95418 0.90983 0.93698 0.93606 0.94553 0.79074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.45 59.85 0.69 1.09 16 2 N -0.36 -3.00 3.99 -67.55 -0.27 -3.27 16 3 C 0.09 0.79 11.51 -16.45 -0.19 0.60 16 4 C -0.19 -1.83 6.12 -105.07 -0.64 -2.47 16 5 C 0.11 1.22 7.16 -36.32 -0.26 0.96 16 6 C -0.22 -2.19 10.56 -39.60 -0.42 -2.60 16 7 C -0.11 -1.31 10.65 -39.15 -0.42 -1.73 16 8 C -0.08 -1.12 7.16 -36.48 -0.26 -1.38 16 9 C 0.60 9.22 7.77 -13.02 -0.10 9.12 16 10 O -0.53 -9.53 16.87 5.15 0.09 -9.44 16 11 N -0.71 -10.25 5.55 -61.74 -0.34 -10.59 16 12 C 0.13 2.00 5.51 -4.04 -0.02 1.98 16 13 C -0.15 -2.72 3.93 -89.70 -0.35 -3.07 16 14 C 0.17 3.84 7.08 -2.84 -0.02 3.82 16 15 N -0.61 -15.60 3.70 -177.68 -0.66 -16.26 16 16 C -0.22 -6.21 10.70 -15.06 -0.16 -6.38 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 19 N -0.92 -27.08 11.39 55.49 0.63 -26.45 16 20 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.13 2.57 8.51 -2.97 -0.03 2.54 16 25 O -0.16 -1.98 10.42 3.44 0.04 -1.95 16 26 C 0.09 0.74 11.76 -16.99 -0.20 0.54 16 27 N -0.30 -2.90 12.51 30.85 0.39 -2.51 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.19 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.41 5.29 8.22 -40.82 -0.34 4.96 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.20 7.88 -51.93 -0.41 0.79 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 39 H 0.07 1.80 7.16 -51.93 -0.37 1.43 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.19 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -35.57 377.18 -7.67 -43.25 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.72 Total: 1.87 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.48 Total: 2.68 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.25 Total: -59.08 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.12 Total: -11.38 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.57 -7.67 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032117463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.558 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds