Wall clock time and date at job start Tue Mar 31 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34660 * 125.80655 * 2 1 4 4 C 1.37861 * 107.39788 * 180.24776 * 3 2 1 5 5 C 1.47681 * 126.37317 * 179.73940 * 4 3 2 6 6 C 1.36603 * 125.65311 * 179.97438 * 5 4 3 7 7 C 1.39763 * 107.12578 * 179.97438 * 6 5 4 8 8 C 1.37854 * 106.77955 * 0.02562 * 7 6 5 9 9 C 1.46300 * 125.96955 * 180.02562 * 8 7 6 10 10 O 1.21745 * 120.00064 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00058 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00234 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47227 * 180.02562 * 12 11 9 14 14 C 1.53946 * 113.74231 * 273.74146 * 13 12 11 15 15 N 1.47814 * 86.03830 * 222.08494 * 14 13 12 16 16 C 1.36937 * 134.45942 * 204.64759 * 15 14 13 17 17 H 1.07992 * 119.99993 * 179.85957 * 16 15 14 18 18 C 1.38809 * 119.99676 * 359.85970 * 16 15 14 19 19 N 1.31627 * 120.00335 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46930 * 90.00188 * 20 18 16 22 22 H 1.48497 * 109.47444 * 210.00255 * 20 18 16 23 23 H 1.48498 * 109.47080 * 330.00273 * 20 18 16 24 24 C 1.47580 * 91.05048 * 24.54490 * 15 14 13 25 25 O 1.34326 * 125.64957 * 359.69060 * 5 4 3 26 26 C 1.41171 * 107.25299 * 359.58096 * 4 3 2 27 27 N 1.30547 * 108.09580 * 0.42526 * 26 4 3 28 28 H 1.09000 * 109.47108 * 89.99773 * 1 2 3 29 29 H 1.08995 * 109.46998 * 210.00091 * 1 2 3 30 30 H 1.08998 * 109.46526 * 330.00137 * 1 2 3 31 31 H 1.08002 * 126.29742 * 359.97438 * 3 2 1 32 32 H 1.08003 * 126.43542 * 359.94350 * 6 5 4 33 33 H 1.08005 * 126.61663 * 179.97438 * 7 6 5 34 34 H 0.96999 * 120.00049 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.46581 * 299.99968 * 12 11 9 36 36 H 1.08990 * 109.47126 * 60.00032 * 12 11 9 37 37 H 1.09003 * 112.94589 * 45.32952 * 13 12 11 38 38 H 1.09003 * 113.76479 * 336.34878 * 14 13 12 39 39 H 1.08997 * 113.76933 * 107.74438 * 14 13 12 40 40 H 0.96998 * 119.99978 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.77327 * 221.15421 * 24 15 14 42 42 H 1.08999 * 113.76916 * 89.75523 * 24 15 14 43 43 H 1.07991 * 125.95389 * 180.14115 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2529 1.0921 0.0000 4 6 3.5609 0.6567 -0.0057 5 6 4.7674 1.5084 -0.0132 6 6 6.0580 1.0608 -0.0183 7 6 6.8845 2.1878 -0.0252 8 6 6.0555 3.2893 -0.0234 9 6 6.4848 4.6879 -0.0294 10 8 7.6713 4.9604 -0.0371 11 7 5.5667 5.6746 -0.0273 12 6 5.9966 7.0751 -0.0328 13 6 4.7673 7.9859 -0.0284 14 6 4.2072 8.2778 -1.4324 15 7 4.0456 9.6712 -0.9662 16 6 3.2344 10.7145 -1.3247 17 1 3.3134 11.6612 -0.8111 18 6 2.3105 10.5553 -2.3484 19 7 2.2139 9.4013 -2.9742 20 14 1.2043 11.9787 -2.8381 21 1 1.8683 12.7798 -3.8976 22 1 -0.0847 11.4499 -3.3520 23 1 0.9500 12.8380 -1.6540 24 6 5.1072 9.4857 0.0420 25 8 4.7775 2.8516 -0.0215 26 6 3.5325 -0.7547 0.0007 27 7 2.2837 -1.1351 0.0004 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.9210 2.1199 -0.0004 32 1 6.3793 0.0297 -0.0167 33 1 7.9645 2.1947 -0.0300 34 1 4.6214 5.4575 -0.0215 35 1 6.5986 7.2738 0.8539 36 1 6.5901 7.2695 -0.9260 37 1 4.0095 7.6735 0.6901 38 1 4.9408 8.1638 -2.2304 39 1 3.2651 7.7719 -1.6434 40 1 1.5680 9.2900 -3.6893 41 1 4.8825 9.9424 1.0059 42 1 6.1058 9.7273 -0.3220 43 1 4.3937 -1.4062 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032117463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:47 Heat of formation + Delta-G solvation = 91.203374 kcal Electronic energy + Delta-G solvation = -26534.904098 eV Core-core repulsion = 22584.746858 eV Total energy + Delta-G solvation = -3950.157240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.55752 -42.08358 -40.66986 -39.55234 -35.87701 -34.70879 -34.18457 -33.83975 -32.47751 -30.88202 -29.74419 -28.04585 -27.11713 -26.53132 -24.57398 -23.54637 -23.09483 -21.97842 -21.45477 -21.19752 -20.69973 -19.29519 -18.71909 -18.15759 -17.44145 -17.19231 -16.95562 -16.49781 -16.42590 -16.07977 -15.73280 -15.63200 -15.35943 -14.85201 -14.54777 -14.23185 -14.08485 -13.99532 -13.85817 -13.69670 -13.64403 -13.29750 -13.10336 -13.07826 -12.88448 -12.52922 -12.25362 -11.97337 -11.85449 -11.62597 -11.40096 -11.18399 -11.10541 -10.86205 -10.65548 -10.53607 -10.13790 -8.91506 -8.72073 -7.90220 -5.23522 -0.19087 0.73005 1.18088 1.36910 1.45620 1.47623 1.56074 1.66709 2.10854 2.16499 2.20845 2.47744 3.30349 3.35302 3.39550 3.68371 3.78696 3.86651 3.95886 4.05013 4.08756 4.23036 4.35547 4.41417 4.50506 4.58858 4.59426 4.68754 4.70194 4.78202 4.84913 4.87176 4.91629 5.01686 5.09455 5.25559 5.31784 5.40518 5.50450 5.54360 5.64695 5.81536 5.91429 5.94307 6.46039 6.54514 6.92573 7.02855 7.61186 8.56879 9.26582 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.002575 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.066335 B =10872.856025 C =13157.854934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.366 5.366 3 C 0.094 3.906 4 C -0.213 4.213 5 C 0.116 3.884 6 C -0.217 4.217 7 C -0.104 4.104 8 C -0.117 4.117 9 C 0.602 3.398 10 O -0.562 6.562 11 N -0.707 5.707 12 C 0.140 3.860 13 C -0.116 4.116 14 C 0.165 3.835 15 N -0.646 5.646 16 C -0.235 4.235 17 H 0.084 0.916 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.978 3.022 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.267 1.267 24 C 0.128 3.872 25 O -0.168 6.168 26 C 0.090 3.910 27 N -0.324 5.324 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.204 0.796 32 H 0.188 0.812 33 H 0.170 0.830 34 H 0.413 0.587 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.012 0.988 39 H 0.044 0.956 40 H 0.248 0.752 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 -22.793 9.184 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.144 5.144 3 C -0.057 4.057 4 C -0.225 4.225 5 C 0.062 3.938 6 C -0.236 4.236 7 C -0.125 4.125 8 C -0.168 4.168 9 C 0.390 3.610 10 O -0.444 6.444 11 N -0.356 5.356 12 C 0.016 3.984 13 C -0.135 4.135 14 C 0.040 3.960 15 N -0.373 5.373 16 C -0.363 4.363 17 H 0.102 0.898 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.192 1.192 24 C 0.002 3.998 25 O -0.064 6.064 26 C -0.096 4.096 27 N -0.145 5.145 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.221 0.779 32 H 0.205 0.795 33 H 0.187 0.813 34 H 0.249 0.751 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.030 0.970 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.421 -23.196 9.022 24.892 hybrid contribution -0.353 1.514 -0.842 1.768 sum -0.774 -21.682 8.180 23.186 Atomic orbital electron populations 1.22348 0.71237 1.06503 1.05139 1.48728 1.08447 1.03172 1.54096 1.23511 0.90281 0.94861 0.97033 1.18148 0.89210 0.92386 1.22796 1.20123 0.94356 0.79095 1.00245 1.21885 0.90017 1.01318 1.10389 1.22323 1.01527 0.90197 0.98414 1.22044 0.81747 0.94487 1.18546 1.16624 0.85348 0.82603 0.76413 1.90850 1.17155 1.83050 1.53309 1.45882 1.10306 1.06167 1.73268 1.21319 0.96258 0.78435 1.02351 1.23411 0.96795 0.94609 0.98728 1.22271 0.96821 0.84513 0.92406 1.46416 1.39220 1.11010 1.40614 1.19443 1.10992 0.91836 1.14051 0.89838 1.25629 1.01710 0.99890 0.98923 1.70005 1.38974 1.24707 1.26524 0.85078 0.77699 0.78407 0.78146 1.21639 1.21928 1.19179 1.22694 0.91763 0.92270 0.93040 1.84034 1.28663 1.22245 1.71434 1.24345 0.95806 0.92710 0.96742 1.77208 1.02184 1.09160 1.25910 0.89189 0.88202 0.86718 0.77895 0.79451 0.81275 0.75112 0.89831 0.92241 0.87820 0.97024 0.93790 0.94321 0.91802 0.93316 0.76442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.45 127.77 1.46 2.05 16 2 N -0.37 -5.47 3.99 -367.61 -1.47 -6.94 16 3 C 0.09 1.47 11.51 84.17 0.97 2.44 16 4 C -0.21 -3.81 6.12 -20.15 -0.12 -3.93 16 5 C 0.12 2.37 7.16 24.38 0.17 2.55 16 6 C -0.22 -3.89 10.56 22.26 0.24 -3.65 16 7 C -0.10 -2.32 10.65 22.55 0.24 -2.08 16 8 C -0.12 -3.10 7.16 24.28 0.17 -2.92 16 9 C 0.60 18.40 7.77 86.34 0.67 19.07 16 10 O -0.56 -20.26 16.87 -4.49 -0.08 -20.34 16 11 N -0.71 -20.08 5.55 -467.44 -2.59 -22.68 16 12 C 0.14 4.22 5.51 86.38 0.48 4.70 16 13 C -0.12 -3.98 3.93 -10.14 -0.04 -4.02 16 14 C 0.17 7.68 7.08 86.44 0.61 8.30 16 15 N -0.65 -32.93 3.70 -716.07 -2.65 -35.59 16 16 C -0.23 -13.18 10.70 84.03 0.90 -12.28 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 19 N -0.95 -57.26 11.39 21.65 0.25 -57.01 16 20 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 C 0.13 4.91 8.51 86.49 0.74 5.64 16 25 O -0.17 -4.07 10.42 -10.62 -0.11 -4.18 16 26 C 0.09 1.39 11.76 85.60 1.01 2.40 16 27 N -0.32 -5.89 12.51 -56.31 -0.70 -6.60 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.19 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.41 10.59 8.22 -92.71 -0.76 9.83 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.06 1.97 7.88 -2.39 -0.02 1.96 16 37 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.01 0.59 7.92 -2.39 -0.02 0.57 16 39 H 0.04 2.27 7.16 -2.39 -0.02 2.26 16 40 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 43 H 0.22 1.79 8.06 -2.92 -0.02 1.76 16 Total: -1.00 -77.48 377.18 2.91 -74.57 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.28 Total: 16.37 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 7.96 Total: 14.81 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -7.17 Total: -128.81 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.19 Total: -24.52 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -77.48 2.91 -74.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032117463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.777 kcal (2) G-P(sol) polarization free energy of solvation -77.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds