Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36441 * 126.31876 * 2 1 4 4 O 1.35275 * 125.02141 * 0.04542 * 3 2 1 5 5 N 1.30724 * 109.96420 * 179.77073 * 3 2 1 6 6 C 1.35982 * 109.53466 * 0.23697 * 5 3 2 7 7 C 1.39346 * 133.39883 * 179.97438 * 6 5 3 8 8 C 1.39204 * 119.51871 * 180.02562 * 7 6 5 9 9 C 1.47667 * 119.92023 * 179.97438 * 8 7 6 10 10 O 1.21575 * 119.99498 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00276 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00023 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47286 * 180.02562 * 12 11 9 14 14 C 1.53948 * 113.74345 * 273.74590 * 13 12 11 15 15 N 1.47812 * 86.03570 * 222.08558 * 14 13 12 16 16 C 1.36933 * 134.45426 * 204.65015 * 15 14 13 17 17 H 1.07999 * 120.00261 * 179.85887 * 16 15 14 18 18 C 1.38818 * 120.00095 * 359.85798 * 16 15 14 19 19 N 1.31610 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47226 * 90.00281 * 20 18 16 22 22 H 1.48497 * 109.46760 * 210.00081 * 20 18 16 23 23 H 1.48500 * 109.47186 * 329.99594 * 20 18 16 24 24 C 1.47580 * 91.05355 * 24.54759 * 15 14 13 25 25 C 1.40075 * 120.16590 * 359.93018 * 8 7 6 26 26 C 1.36520 * 120.44045 * 0.04487 * 25 8 7 27 27 C 1.38124 * 126.32013 * 180.17287 * 2 1 3 28 28 H 1.09005 * 109.46875 * 90.02276 * 1 2 3 29 29 H 1.08997 * 109.47142 * 210.01965 * 1 2 3 30 30 H 1.09003 * 109.47011 * 330.02351 * 1 2 3 31 31 H 0.96700 * 113.99596 * 269.71588 * 4 3 2 32 32 H 1.08005 * 120.23901 * 0.02562 * 7 6 5 33 33 H 0.97004 * 119.99977 * 0.02562 * 11 9 8 34 34 H 1.08999 * 109.47429 * 300.00776 * 12 11 9 35 35 H 1.09005 * 109.47298 * 60.00062 * 12 11 9 36 36 H 1.09002 * 112.94155 * 45.33605 * 13 12 11 37 37 H 1.09006 * 113.76629 * 336.34704 * 14 13 12 38 38 H 1.08995 * 113.77124 * 107.74017 * 14 13 12 39 39 H 0.97006 * 119.99846 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.77105 * 221.15723 * 24 15 14 41 41 H 1.08997 * 113.76740 * 89.75796 * 24 15 14 42 42 H 1.08004 * 119.78270 * 180.02562 * 25 8 7 43 43 H 1.07999 * 119.91846 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2731 1.0993 0.0000 4 8 1.8403 2.3810 0.0009 5 7 3.5275 0.7313 0.0049 6 6 3.6029 -0.6265 0.0031 7 6 4.6670 -1.5262 0.0059 8 6 4.4085 -2.8941 0.0021 9 6 5.5294 -3.8554 0.0045 10 8 6.6762 -3.4519 0.0092 11 7 5.2811 -5.1801 0.0014 12 6 6.3931 -6.1338 0.0031 13 6 5.8412 -7.5608 -0.0017 14 6 5.5270 -8.1086 1.4023 15 7 6.1344 -9.3719 0.9333 16 6 6.0074 -10.6877 1.2905 17 1 6.5792 -11.4449 0.7747 18 6 5.1438 -11.0484 2.3157 19 7 4.4466 -10.1257 2.9440 20 14 4.9711 -12.8433 2.8035 21 1 5.9629 -13.1666 3.8604 22 1 3.6003 -13.0861 3.3200 23 1 5.2129 -13.7039 1.6177 24 6 6.9303 -8.6463 -0.0758 25 6 3.0878 -3.3609 -0.0029 26 6 2.0435 -2.4816 -0.0051 27 6 2.2831 -1.1129 -0.0034 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 1.7181 2.7554 -0.8823 32 1 5.6848 -1.1649 0.0109 33 1 4.3660 -5.5021 -0.0027 34 1 7.0062 -5.9787 -0.8846 35 1 7.0007 -5.9819 0.8953 36 1 5.0322 -7.7010 -0.7186 37 1 6.0878 -7.6210 2.1998 38 1 4.4609 -8.1850 1.6157 39 1 3.8434 -10.3777 3.6607 40 1 6.9823 -9.1512 -1.0404 41 1 7.9041 -8.3171 0.2865 42 1 2.8944 -4.4234 -0.0053 43 1 1.0285 -2.8508 -0.0094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032208151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = 67.056996 kcal Electronic energy + Delta-G solvation = -26641.121697 eV Core-core repulsion = 22689.917392 eV Total energy + Delta-G solvation = -3951.204305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59301 -39.87204 -38.43047 -37.90969 -36.55433 -34.80159 -34.38217 -32.18986 -30.95503 -29.80939 -28.52124 -27.57166 -25.90059 -24.78626 -23.74174 -23.10276 -21.90960 -21.22815 -20.62012 -19.21372 -19.02783 -17.94132 -17.53876 -17.01069 -16.69470 -16.04086 -15.86473 -15.23517 -15.11080 -14.75260 -14.56378 -14.34317 -14.21269 -13.79910 -13.65074 -13.39302 -13.29613 -13.10462 -12.89036 -12.63866 -12.36038 -11.72265 -11.65580 -11.39971 -11.31852 -10.99796 -10.83264 -10.71225 -10.58152 -10.37206 -10.05499 -9.75909 -9.72402 -9.42849 -8.88703 -8.79926 -8.61700 -8.48031 -6.87789 -5.77241 -3.09060 0.52402 0.74717 1.77587 2.17533 2.87249 3.10530 3.37584 3.39155 3.43882 3.45473 3.74264 3.97864 4.17503 4.45215 4.53980 4.57537 4.70988 4.85112 4.88204 4.97843 5.04517 5.16467 5.28871 5.33602 5.38656 5.66777 5.69891 5.84390 5.89082 6.02610 6.05061 6.09569 6.15842 6.26495 6.36625 6.37602 6.57484 6.65681 6.76636 7.02013 7.22092 7.34412 7.35902 7.54841 7.66939 7.97931 8.34250 9.04657 9.70745 10.60032 11.40018 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.002077 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.758104 B =13474.881367 C =14470.602628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.495 5.495 3 C 0.445 3.555 4 O -0.441 6.441 5 N -0.477 5.477 6 C 0.045 3.955 7 C 0.006 3.994 8 C -0.137 4.137 9 C 0.559 3.441 10 O -0.542 6.542 11 N -0.716 5.716 12 C 0.130 3.870 13 C -0.154 4.154 14 C 0.168 3.832 15 N -0.613 5.613 16 C -0.221 4.221 17 H 0.080 0.920 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.128 3.872 25 C -0.065 4.065 26 C -0.113 4.113 27 C 0.074 3.926 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.409 0.591 32 H 0.147 0.853 33 H 0.401 0.599 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.253 0.747 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.140 0.860 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 22.648 -9.621 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.197 5.197 3 C 0.142 3.858 4 O -0.242 6.242 5 N -0.207 5.207 6 C -0.072 4.072 7 C -0.015 4.015 8 C -0.143 4.143 9 C 0.346 3.654 10 O -0.420 6.420 11 N -0.367 5.367 12 C 0.006 3.994 13 C -0.173 4.173 14 C 0.043 3.957 15 N -0.340 5.340 16 C -0.349 4.349 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.002 3.998 25 C -0.085 4.085 26 C -0.134 4.134 27 C -0.035 4.035 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.267 0.733 32 H 0.165 0.835 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.157 0.843 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.116 23.239 -8.822 26.836 hybrid contribution -1.490 -1.351 0.003 2.011 sum -11.606 21.888 -8.819 26.297 Atomic orbital electron populations 1.22037 0.75749 1.05251 1.03673 1.45577 1.07613 1.05209 1.61332 1.20358 0.84000 0.81260 1.00142 1.84813 1.86400 1.18472 1.34555 1.70720 1.15426 1.11440 1.23064 1.18612 0.92103 0.89230 1.07274 1.20380 0.98419 0.89809 0.92874 1.19685 0.93493 0.93269 1.07843 1.18031 0.88280 0.82397 0.76719 1.90778 1.22093 1.78899 1.50252 1.45950 1.10973 1.05366 1.74384 1.21486 0.88471 0.87428 1.01994 1.23809 1.00231 0.91105 1.02197 1.22362 0.99466 0.83943 0.89927 1.45991 1.47136 1.01724 1.39103 1.19034 1.20386 0.81346 1.14147 0.90264 1.24781 0.99556 0.97767 0.98481 1.69809 1.30050 1.31222 1.25883 0.86121 0.77059 0.84230 0.78371 1.21636 1.21659 1.20627 1.22488 0.93514 0.90234 0.93583 1.20826 0.90848 0.99909 0.96948 1.19565 1.00160 0.88161 1.05508 1.18814 0.90738 0.88968 1.04981 0.90489 0.89229 0.89036 0.73281 0.83501 0.76365 0.91738 0.91184 0.89196 0.95427 0.90984 0.93687 0.93650 0.94583 0.84257 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 11.10 59.85 0.66 0.94 16 2 N -0.50 -4.07 3.22 -123.30 -0.40 -4.47 16 3 C 0.45 4.30 8.98 -88.90 -0.80 3.50 16 4 O -0.44 -2.83 13.51 -17.52 -0.24 -3.07 16 5 N -0.48 -6.10 11.31 -12.25 -0.14 -6.23 16 6 C 0.05 0.57 7.21 -84.70 -0.61 -0.04 16 7 C 0.01 0.07 9.64 -38.81 -0.37 -0.30 16 8 C -0.14 -1.69 5.87 -105.00 -0.62 -2.31 16 9 C 0.56 8.20 7.76 -12.41 -0.10 8.11 16 10 O -0.54 -9.83 16.32 5.30 0.09 -9.74 16 11 N -0.72 -9.66 5.50 -61.31 -0.34 -10.00 16 12 C 0.13 1.99 5.51 -4.05 -0.02 1.97 16 13 C -0.15 -2.67 3.93 -89.69 -0.35 -3.02 16 14 C 0.17 3.80 7.08 -2.84 -0.02 3.78 16 15 N -0.61 -15.54 3.70 -177.70 -0.66 -16.20 16 16 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.92 -27.06 11.39 55.49 0.63 -26.43 16 20 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.13 2.55 8.51 -2.97 -0.03 2.52 16 25 C -0.07 -0.62 9.47 -39.51 -0.37 -1.00 16 26 C -0.11 -0.98 9.96 -39.94 -0.40 -1.38 16 27 C 0.07 0.76 6.87 -83.85 -0.58 0.19 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.24 8.12 -51.93 -0.42 -0.18 16 31 H 0.41 0.37 9.06 45.56 0.41 0.78 16 32 H 0.15 1.97 7.63 -52.48 -0.40 1.57 16 33 H 0.40 4.50 6.47 -40.82 -0.26 4.23 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.18 7.88 -51.93 -0.41 0.77 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.03 0.66 7.92 -51.93 -0.41 0.24 16 38 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.14 1.04 6.36 -52.48 -0.33 0.70 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -37.38 367.57 -9.09 -46.47 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.70 Total: 0.87 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -3.86 Total: 6.24 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.90 Total: -63.32 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.15 Total: -12.81 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.38 -9.09 -46.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032208151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.529 kcal (2) G-P(sol) polarization free energy of solvation -37.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds