Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36441 * 126.31876 * 2 1 4 4 O 1.35275 * 125.02141 * 0.04542 * 3 2 1 5 5 N 1.30724 * 109.96420 * 179.77073 * 3 2 1 6 6 C 1.35982 * 109.53466 * 0.23697 * 5 3 2 7 7 C 1.39346 * 133.39883 * 179.97438 * 6 5 3 8 8 C 1.39204 * 119.51871 * 180.02562 * 7 6 5 9 9 C 1.47667 * 119.92023 * 179.97438 * 8 7 6 10 10 O 1.21575 * 119.99498 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00276 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00023 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47286 * 180.02562 * 12 11 9 14 14 C 1.53948 * 113.74345 * 273.74590 * 13 12 11 15 15 N 1.47812 * 86.03570 * 222.08558 * 14 13 12 16 16 C 1.36933 * 134.45426 * 204.65015 * 15 14 13 17 17 H 1.07999 * 120.00261 * 179.85887 * 16 15 14 18 18 C 1.38818 * 120.00095 * 359.85798 * 16 15 14 19 19 N 1.31610 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47226 * 90.00281 * 20 18 16 22 22 H 1.48497 * 109.46760 * 210.00081 * 20 18 16 23 23 H 1.48500 * 109.47186 * 329.99594 * 20 18 16 24 24 C 1.47580 * 91.05355 * 24.54759 * 15 14 13 25 25 C 1.40075 * 120.16590 * 359.93018 * 8 7 6 26 26 C 1.36520 * 120.44045 * 0.04487 * 25 8 7 27 27 C 1.38124 * 126.32013 * 180.17287 * 2 1 3 28 28 H 1.09005 * 109.46875 * 90.02276 * 1 2 3 29 29 H 1.08997 * 109.47142 * 210.01965 * 1 2 3 30 30 H 1.09003 * 109.47011 * 330.02351 * 1 2 3 31 31 H 0.96700 * 113.99596 * 269.71588 * 4 3 2 32 32 H 1.08005 * 120.23901 * 0.02562 * 7 6 5 33 33 H 0.97004 * 119.99977 * 0.02562 * 11 9 8 34 34 H 1.08999 * 109.47429 * 300.00776 * 12 11 9 35 35 H 1.09005 * 109.47298 * 60.00062 * 12 11 9 36 36 H 1.09002 * 112.94155 * 45.33605 * 13 12 11 37 37 H 1.09006 * 113.76629 * 336.34704 * 14 13 12 38 38 H 1.08995 * 113.77124 * 107.74017 * 14 13 12 39 39 H 0.97006 * 119.99846 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.77105 * 221.15723 * 24 15 14 41 41 H 1.08997 * 113.76740 * 89.75796 * 24 15 14 42 42 H 1.08004 * 119.78270 * 180.02562 * 25 8 7 43 43 H 1.07999 * 119.91846 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2731 1.0993 0.0000 4 8 1.8403 2.3810 0.0009 5 7 3.5275 0.7313 0.0049 6 6 3.6029 -0.6265 0.0031 7 6 4.6670 -1.5262 0.0059 8 6 4.4085 -2.8941 0.0021 9 6 5.5294 -3.8554 0.0045 10 8 6.6762 -3.4519 0.0092 11 7 5.2811 -5.1801 0.0014 12 6 6.3931 -6.1338 0.0031 13 6 5.8412 -7.5608 -0.0017 14 6 5.5270 -8.1086 1.4023 15 7 6.1344 -9.3719 0.9333 16 6 6.0074 -10.6877 1.2905 17 1 6.5792 -11.4449 0.7747 18 6 5.1438 -11.0484 2.3157 19 7 4.4466 -10.1257 2.9440 20 14 4.9711 -12.8433 2.8035 21 1 5.9629 -13.1666 3.8604 22 1 3.6003 -13.0861 3.3200 23 1 5.2129 -13.7039 1.6177 24 6 6.9303 -8.6463 -0.0758 25 6 3.0878 -3.3609 -0.0029 26 6 2.0435 -2.4816 -0.0051 27 6 2.2831 -1.1129 -0.0034 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 1.7181 2.7554 -0.8823 32 1 5.6848 -1.1649 0.0109 33 1 4.3660 -5.5021 -0.0027 34 1 7.0062 -5.9787 -0.8846 35 1 7.0007 -5.9819 0.8953 36 1 5.0322 -7.7010 -0.7186 37 1 6.0878 -7.6210 2.1998 38 1 4.4609 -8.1850 1.6157 39 1 3.8434 -10.3777 3.6607 40 1 6.9823 -9.1512 -1.0404 41 1 7.9041 -8.3171 0.2865 42 1 2.8944 -4.4234 -0.0053 43 1 1.0285 -2.8508 -0.0094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032208151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = 37.211827 kcal Electronic energy + Delta-G solvation = -26642.415881 eV Core-core repulsion = 22689.917392 eV Total energy + Delta-G solvation = -3952.498489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.31591 -41.01332 -39.69737 -38.95024 -37.32096 -35.81873 -35.36897 -34.14918 -31.78484 -30.96770 -29.86632 -28.15977 -27.42641 -26.50047 -24.82646 -23.86253 -23.49831 -21.93815 -21.71101 -20.70918 -19.61465 -19.02825 -18.67241 -18.21713 -17.71498 -17.14267 -16.94710 -16.73224 -16.24216 -15.94053 -15.60491 -15.37563 -15.27272 -15.04605 -14.78872 -14.41606 -14.20390 -14.03213 -13.93235 -13.49327 -13.35617 -13.27234 -13.06289 -12.86338 -12.50213 -12.45553 -12.41441 -12.19714 -11.80914 -11.56336 -11.50621 -11.26359 -11.14479 -10.98275 -10.83202 -10.08403 -9.43746 -9.25947 -8.88582 -7.88200 -5.20878 -0.28794 -0.06002 1.18104 1.47329 1.47807 1.49179 1.57600 1.85731 2.11235 2.49659 2.64224 2.82443 3.28768 3.32824 3.43062 3.67333 3.77094 3.84843 3.91069 4.09692 4.14142 4.20285 4.38790 4.40665 4.43134 4.58525 4.64713 4.69947 4.82520 4.90009 4.91862 4.98293 5.14224 5.18854 5.24972 5.28456 5.29930 5.43378 5.58289 5.60410 5.67080 5.69590 5.97504 6.53984 6.56860 6.61394 6.95573 7.22140 7.63585 8.59660 9.28720 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.002077 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.758104 B =13474.881367 C =14470.602628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.488 5.488 3 C 0.456 3.544 4 O -0.440 6.440 5 N -0.527 5.527 6 C 0.021 3.979 7 C -0.015 4.015 8 C -0.144 4.144 9 C 0.560 3.440 10 O -0.584 6.584 11 N -0.706 5.706 12 C 0.141 3.859 13 C -0.113 4.113 14 C 0.165 3.835 15 N -0.646 5.646 16 C -0.234 4.234 17 H 0.083 0.917 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.977 3.023 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.267 1.267 24 C 0.125 3.875 25 C -0.066 4.066 26 C -0.097 4.097 27 C 0.073 3.927 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.433 0.567 32 H 0.125 0.875 33 H 0.414 0.586 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.010 0.990 38 H 0.048 0.952 39 H 0.248 0.752 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.164 0.836 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.822 22.607 -10.904 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.189 5.189 3 C 0.152 3.848 4 O -0.245 6.245 5 N -0.259 5.259 6 C -0.096 4.096 7 C -0.036 4.036 8 C -0.150 4.150 9 C 0.348 3.652 10 O -0.465 6.465 11 N -0.357 5.357 12 C 0.016 3.984 13 C -0.133 4.133 14 C 0.040 3.960 15 N -0.372 5.372 16 C -0.362 4.362 17 H 0.100 0.900 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.806 3.194 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.192 1.192 24 C 0.000 4.000 25 C -0.086 4.086 26 C -0.117 4.117 27 C -0.038 4.038 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.296 0.704 32 H 0.143 0.857 33 H 0.252 0.748 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.181 0.819 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.619 23.219 -10.158 28.311 hybrid contribution -0.767 -1.185 0.379 1.461 sum -13.386 22.034 -9.779 27.573 Atomic orbital electron populations 1.22431 0.72758 1.06621 1.05576 1.45802 1.09149 1.03984 1.59970 1.20436 0.83689 0.82465 0.98236 1.84781 1.85982 1.17001 1.36770 1.70633 1.17717 1.11916 1.25587 1.18717 0.93220 0.89482 1.08230 1.20268 0.97915 0.90606 0.94809 1.19506 0.93966 0.92260 1.09249 1.18382 0.88349 0.82777 0.75675 1.90752 1.23954 1.79561 1.52280 1.45791 1.11257 1.04815 1.73868 1.21238 0.88812 0.86443 1.01876 1.23407 0.99579 0.91538 0.98753 1.22290 0.97568 0.83779 0.92387 1.46423 1.48673 1.01702 1.40449 1.19431 1.19852 0.83029 1.13930 0.89969 1.25609 0.99815 1.01795 0.98932 1.69986 1.30855 1.32953 1.26369 0.85093 0.76500 0.79722 0.78108 1.21787 1.21881 1.19208 1.22703 0.94011 0.90305 0.93021 1.21052 0.89615 1.01347 0.96582 1.19937 1.01636 0.87089 1.03075 1.19031 0.90134 0.90119 1.04538 0.88269 0.87836 0.87801 0.70387 0.85662 0.74795 0.90399 0.92866 0.87282 0.97232 0.93355 0.94273 0.91856 0.93720 0.81851 0.81283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 11.10 127.77 1.42 1.66 16 2 N -0.49 -6.86 3.22 -654.88 -2.11 -8.97 16 3 C 0.46 8.24 8.98 179.75 1.61 9.86 16 4 O -0.44 -4.84 13.51 -85.59 -1.16 -5.99 16 5 N -0.53 -13.75 11.31 -306.53 -3.47 -17.22 16 6 C 0.02 0.54 7.21 39.36 0.28 0.82 16 7 C -0.02 -0.42 9.64 22.77 0.22 -0.20 16 8 C -0.14 -3.56 5.87 -20.11 -0.12 -3.68 16 9 C 0.56 16.57 7.76 86.73 0.67 17.24 16 10 O -0.58 -21.99 16.32 -3.95 -0.06 -22.06 16 11 N -0.71 -18.33 5.50 -466.15 -2.57 -20.90 16 12 C 0.14 4.16 5.51 86.38 0.48 4.63 16 13 C -0.11 -3.77 3.93 -10.13 -0.04 -3.81 16 14 C 0.16 7.50 7.08 86.44 0.61 8.11 16 15 N -0.65 -32.60 3.70 -716.12 -2.65 -35.25 16 16 C -0.23 -13.06 10.70 84.04 0.90 -12.16 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 18 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 19 N -0.95 -56.73 11.39 21.65 0.25 -56.48 16 20 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 C 0.12 4.78 8.51 86.49 0.74 5.52 16 25 C -0.07 -1.12 9.47 22.31 0.21 -0.91 16 26 C -0.10 -1.39 9.96 22.04 0.22 -1.17 16 27 C 0.07 1.37 6.87 38.92 0.27 1.63 16 28 H 0.10 -0.02 8.14 -2.38 -0.02 -0.04 16 29 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.10 0.16 8.12 -2.39 -0.02 0.14 16 31 H 0.43 -0.18 9.06 -74.06 -0.67 -0.85 16 32 H 0.13 3.81 7.63 -2.91 -0.02 3.78 16 33 H 0.41 8.48 6.47 -92.71 -0.60 7.88 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.79 7.88 -2.38 -0.02 1.77 16 36 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.01 0.48 7.92 -2.38 -0.02 0.46 16 38 H 0.05 2.41 7.16 -2.39 -0.02 2.40 16 39 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 42 H 0.16 1.92 6.36 -2.91 -0.02 1.90 16 43 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -84.05 367.57 -2.00 -86.04 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -0.20 Total: 9.27 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 7.94 Total: 24.12 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -10.55 Total: -138.82 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.22 Total: -28.05 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -84.05 -2.00 -86.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032208151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.256 kcal (2) G-P(sol) polarization free energy of solvation -84.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds