Wall clock time and date at job start Tue Mar 31 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38499 * 120.82181 * 2 1 4 4 C 1.39266 * 119.19150 * 179.97438 * 3 2 1 5 5 C 1.48329 * 119.56730 * 180.02562 * 4 3 2 6 6 O 1.21488 * 120.00516 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99862 * 179.97438 * 5 4 3 8 8 C 1.47870 * 126.94181 * 0.03342 * 7 5 4 9 9 C 1.56018 * 105.10280 * 181.97204 * 8 7 5 10 10 H 1.08999 * 116.24948 * 159.67902 * 9 8 7 11 11 C 1.57085 * 99.60656 * 32.80503 * 9 8 7 12 12 C 1.49285 * 126.94577 * 179.70838 * 7 5 4 13 13 H 1.09006 * 116.14803 * 15.87169 * 12 7 5 14 14 C 1.55484 * 104.35928 * 246.78765 * 12 7 5 15 15 N 1.47866 * 105.16959 * 288.90706 * 14 12 7 16 16 C 1.36934 * 126.94506 * 181.92675 * 15 14 12 17 17 H 1.07994 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99954 * 359.97438 * 16 15 14 19 19 N 1.31622 * 119.99971 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00166 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46871 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47366 * 120.00474 * 20 18 16 23 23 H 1.48498 * 109.47053 * 240.00706 * 20 18 16 24 24 N 1.32746 * 120.85585 * 359.97438 * 4 3 2 25 25 C 1.31388 * 121.80342 * 0.02562 * 24 4 3 26 26 C 1.39756 * 120.71761 * 359.97438 * 25 24 4 27 27 C 1.48010 * 120.46176 * 179.97438 * 26 25 24 28 28 N 1.34777 * 120.00144 * 6.10312 * 27 26 25 29 29 O 1.21531 * 120.00134 * 186.10720 * 27 26 25 30 30 H 1.08997 * 109.47009 * 96.37398 * 1 2 3 31 31 H 1.09005 * 109.47089 * 216.37690 * 1 2 3 32 32 H 1.09002 * 109.47205 * 336.36781 * 1 2 3 33 33 H 1.07995 * 120.39931 * 359.95134 * 3 2 1 34 34 H 1.08990 * 110.31901 * 300.88006 * 8 7 5 35 35 H 1.09004 * 110.31686 * 62.97035 * 8 7 5 36 36 H 1.09003 * 112.36747 * 64.27072 * 11 9 8 37 37 H 1.09001 * 112.37184 * 191.71183 * 11 9 8 38 38 H 1.08995 * 110.34953 * 169.93925 * 14 12 7 39 39 H 1.09006 * 110.29813 * 47.84175 * 14 12 7 40 40 H 0.96998 * 119.99952 * 179.97438 * 19 18 16 41 41 H 1.08005 * 119.63471 * 179.72126 * 25 24 4 42 42 H 0.97001 * 119.99913 * 0.02562 * 28 27 26 43 43 H 0.96996 * 120.00183 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1894 0.0000 4 6 3.6087 1.1498 0.0005 5 6 4.3770 2.4185 0.0011 6 8 3.7918 3.4832 0.0007 7 7 5.7246 2.3903 0.0022 8 6 6.5883 1.1902 0.0022 9 6 8.0476 1.7396 0.0555 10 1 8.8120 1.0445 0.4028 11 6 7.8096 3.0327 0.9150 12 6 6.6466 3.5644 -0.0032 13 1 6.2029 4.5249 0.2592 14 6 7.3526 3.4939 -1.3867 15 7 8.2627 2.3319 -1.2979 16 6 9.1281 1.8887 -2.2622 17 1 9.7454 1.0222 -2.0767 18 6 9.2119 2.5532 -3.4781 19 7 8.4599 3.6095 -3.7039 20 14 10.3919 1.9482 -4.7937 21 1 11.1172 0.7518 -4.2959 22 1 9.6289 1.5907 -6.0165 23 1 11.3674 3.0208 -5.1149 24 7 4.2568 -0.0087 0.0016 25 6 3.6204 -1.1582 0.0016 26 6 2.2235 -1.2008 0.0011 27 6 1.5124 -2.4989 0.0006 28 7 2.2064 -3.6475 0.1247 29 8 0.3027 -2.5290 -0.1118 30 1 -0.3633 -0.1141 -1.0213 31 1 -0.3633 -0.8274 0.6095 32 1 -0.3634 0.9415 0.4120 33 1 1.6967 2.1359 -0.0008 34 1 6.3830 0.5760 0.8789 35 1 6.4331 0.6121 -0.9088 36 1 7.4720 2.8027 1.9256 37 1 8.6742 3.6964 0.9140 38 1 7.9203 4.4062 -1.5695 39 1 6.6190 3.3404 -2.1782 40 1 8.5187 4.0741 -4.5534 41 1 4.1831 -2.0801 -0.0021 42 1 3.1719 -3.6235 0.2147 43 1 1.7404 -4.4982 0.1247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032638564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:52 Heat of formation + Delta-G solvation = 34.041338 kcal Electronic energy + Delta-G solvation = -28356.032157 eV Core-core repulsion = 24403.396185 eV Total energy + Delta-G solvation = -3952.635972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13144 -40.02104 -39.01058 -37.64792 -34.61408 -34.03658 -33.46743 -31.78396 -31.17508 -29.03220 -28.53768 -28.13475 -25.53129 -25.11939 -23.56484 -22.79898 -21.66336 -20.55872 -19.83076 -18.70605 -18.25376 -17.80146 -17.19324 -16.42878 -16.29358 -15.61583 -15.55791 -15.33302 -15.06160 -14.78980 -14.34250 -13.95911 -13.78901 -13.38124 -13.18313 -13.01018 -12.91688 -12.80208 -12.48466 -12.09316 -11.89506 -11.60457 -11.30279 -11.02738 -10.88293 -10.78172 -10.60652 -10.42508 -10.24541 -10.11467 -10.07876 -9.96420 -9.74401 -9.62493 -9.43759 -9.40616 -8.69511 -8.01296 -6.90499 -5.76288 -3.10171 0.12039 0.97818 2.32377 3.02993 3.06911 3.19194 3.37058 3.41933 3.45222 3.80750 3.94104 4.35145 4.42655 4.44793 4.50800 4.73910 4.93484 5.09718 5.24310 5.25235 5.35535 5.47928 5.51128 5.55344 5.59820 5.66307 5.77354 5.83740 6.07255 6.12747 6.22229 6.28012 6.35350 6.39319 6.44424 6.55303 6.62921 6.79014 6.89147 7.41525 7.45377 7.54049 7.71700 7.83970 7.99811 8.10752 8.42756 9.10862 9.72007 10.41226 11.36127 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003330 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.946457 B = 8406.114726 C = 9222.048389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.014 3.986 3 C -0.126 4.126 4 C 0.124 3.876 5 C 0.573 3.427 6 O -0.546 6.546 7 N -0.581 5.581 8 C 0.104 3.896 9 C 0.134 3.866 10 H 0.106 0.894 11 C -0.150 4.150 12 C 0.096 3.904 13 H 0.115 0.885 14 C 0.174 3.826 15 N -0.598 5.598 16 C -0.228 4.228 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.291 1.291 24 N -0.454 5.454 25 C 0.137 3.863 26 C -0.191 4.191 27 C 0.572 3.428 28 N -0.849 5.849 29 O -0.532 6.532 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.155 0.845 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.253 0.747 41 H 0.163 0.837 42 H 0.402 0.598 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 -11.448 11.302 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.006 3.994 3 C -0.147 4.147 4 C -0.013 4.013 5 C 0.360 3.640 6 O -0.425 6.425 7 N -0.311 5.311 8 C -0.021 4.021 9 C 0.025 3.975 10 H 0.124 0.876 11 C -0.189 4.189 12 C -0.006 4.006 13 H 0.133 0.867 14 C 0.049 3.951 15 N -0.322 5.322 16 C -0.356 4.356 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 N -0.165 5.165 25 C -0.024 4.024 26 C -0.197 4.197 27 C 0.357 3.643 28 N -0.413 5.413 29 O -0.410 6.410 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.173 0.827 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.180 0.820 42 H 0.232 0.768 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.528 -10.598 10.935 18.513 hybrid contribution 0.065 -0.768 -0.929 1.207 sum -10.464 -11.365 10.006 18.406 Atomic orbital electron populations 1.21098 0.88655 1.03779 1.04214 1.20465 0.97682 0.90875 0.90376 1.22065 0.93741 0.99500 0.99427 1.21522 0.91572 0.92622 0.95564 1.17439 0.81249 0.86991 0.78362 1.90754 1.68978 1.30137 1.52644 1.49088 1.03659 1.10451 1.67922 1.23319 0.91001 0.86286 1.01486 1.23321 0.93136 0.93761 0.87274 0.87591 1.24202 0.98148 0.99678 0.96912 1.24434 0.87441 0.89080 0.99631 0.86671 1.21819 0.91828 0.91458 0.89997 1.45248 1.45325 1.30777 1.10898 1.19090 1.14156 1.09779 0.92594 0.90095 1.24812 0.99776 0.97850 0.97919 1.69921 1.41792 1.20903 1.24078 0.86052 0.80129 0.77794 0.81793 1.20467 1.21862 1.21765 1.67926 1.39803 0.97592 1.11167 1.22972 0.90022 0.96621 0.92819 1.20900 0.95318 0.94118 1.09338 1.18047 0.86708 0.83971 0.75553 1.43746 1.11923 1.08544 1.77121 1.90779 1.13660 1.87196 1.49333 0.89791 0.88399 0.91376 0.82721 0.92041 0.90439 0.91585 0.89711 0.92432 0.93502 0.93675 0.82001 0.76783 0.76187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.83 36.00 0.32 -0.92 16 2 C 0.01 0.17 5.95 -103.93 -0.62 -0.45 16 3 C -0.13 -1.72 9.30 -39.10 -0.36 -2.08 16 4 C 0.12 1.97 6.73 -82.94 -0.56 1.41 16 5 C 0.57 10.82 7.89 -12.11 -0.10 10.73 16 6 O -0.55 -11.43 16.65 5.38 0.09 -11.34 16 7 N -0.58 -10.95 2.95 -157.80 -0.47 -11.42 16 8 C 0.10 1.82 4.80 -1.68 -0.01 1.81 16 9 C 0.13 2.47 5.53 -62.55 -0.35 2.12 16 10 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 11 C -0.15 -2.51 6.83 -22.10 -0.15 -2.66 16 12 C 0.10 1.86 5.23 -62.65 -0.33 1.53 16 13 H 0.12 2.13 8.05 -51.93 -0.42 1.71 16 14 C 0.17 4.16 4.75 -1.97 -0.01 4.15 16 15 N -0.60 -14.29 3.02 -156.68 -0.47 -14.76 16 16 C -0.23 -6.02 10.38 -15.06 -0.16 -6.18 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -26.75 10.56 55.49 0.59 -26.16 16 20 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 N -0.45 -6.42 7.06 -9.48 -0.07 -6.48 16 25 C 0.14 1.46 10.69 -17.17 -0.18 1.28 16 26 C -0.19 -2.09 5.90 -104.73 -0.62 -2.70 16 27 C 0.57 5.69 8.00 -12.25 -0.10 5.59 16 28 N -0.85 -4.87 8.83 30.57 0.27 -4.60 16 29 O -0.53 -6.79 14.33 5.34 0.08 -6.72 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.06 5.95 -51.93 -0.31 0.76 16 32 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 33 H 0.16 2.01 7.63 -52.49 -0.40 1.61 16 34 H 0.06 0.94 7.48 -51.93 -0.39 0.55 16 35 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.06 1.51 7.46 -51.93 -0.39 1.12 16 39 H 0.05 1.30 7.67 -51.93 -0.40 0.90 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.16 1.06 6.46 -52.48 -0.34 0.72 16 42 H 0.40 1.33 6.93 -40.82 -0.28 1.05 16 43 H 0.41 1.75 8.93 -40.82 -0.36 1.38 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -34.17 351.59 -8.36 -42.53 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.34 Total: 3.71 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: -3.31 Total: 13.34 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.15 Total: -63.42 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.17 Total: -18.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.17 -8.36 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032638564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.576 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds