Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00490 * 2 1 4 4 O 1.21488 * 119.99436 * 359.97438 * 3 2 1 5 5 C 1.48331 * 119.99978 * 179.97438 * 3 2 1 6 6 C 1.39308 * 119.57133 * 179.97438 * 5 3 2 7 7 C 1.38452 * 119.19193 * 179.75999 * 6 5 3 8 8 C 1.39861 * 118.35578 * 0.52944 * 7 6 5 9 9 C 1.48011 * 120.46118 * 179.72885 * 8 7 6 10 10 O 1.21532 * 119.99869 * 172.19585 * 9 8 7 11 11 N 1.34769 * 120.00024 * 352.19650 * 9 8 7 12 12 C 1.47875 * 126.94624 * 4.70639 * 11 9 8 13 13 C 1.56015 * 105.10604 * 181.98329 * 12 11 9 14 14 H 1.08993 * 116.25162 * 159.68091 * 13 12 11 15 15 C 1.57086 * 99.60774 * 32.80154 * 13 12 11 16 16 C 1.49288 * 126.94746 * 184.39447 * 11 9 8 17 17 H 1.09009 * 116.15144 * 15.85743 * 16 11 9 18 18 C 1.55479 * 104.35458 * 246.77851 * 16 11 9 19 19 N 1.47866 * 105.17473 * 288.89903 * 18 16 11 20 20 C 1.36935 * 126.95113 * 181.91946 * 19 18 16 21 21 H 1.08002 * 120.00006 * 180.02562 * 20 19 18 22 22 C 1.38810 * 119.99783 * 0.02562 * 20 19 18 23 23 N 1.31624 * 119.99727 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00214 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47031 * 59.99499 * 24 22 20 26 26 H 1.48493 * 109.47325 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46858 * 299.99827 * 24 22 20 28 28 C 1.39734 * 119.07567 * 359.44729 * 8 7 6 29 29 N 1.31406 * 120.71538 * 0.30586 * 28 8 7 30 30 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47395 * 300.00388 * 1 2 3 32 32 H 1.09003 * 109.46621 * 60.00265 * 1 2 3 33 33 H 0.97003 * 119.99565 * 179.97438 * 2 1 3 34 34 H 1.08007 * 120.40081 * 0.02562 * 6 5 3 35 35 H 1.08002 * 120.81788 * 180.25347 * 7 6 5 36 36 H 1.09005 * 110.31297 * 300.88858 * 12 11 9 37 37 H 1.08996 * 110.31417 * 63.07197 * 12 11 9 38 38 H 1.09007 * 112.36536 * 64.27899 * 15 13 12 39 39 H 1.09000 * 112.36765 * 191.71622 * 15 13 12 40 40 H 1.09000 * 110.35141 * 169.93372 * 18 16 11 41 41 H 1.09002 * 110.30745 * 47.84126 * 18 16 11 42 42 H 0.97006 * 119.99241 * 180.02562 * 23 22 20 43 43 H 1.08003 * 119.63830 * 180.27623 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5315 2.2193 -0.0005 5 6 3.6223 1.1670 0.0006 6 6 4.3099 2.3786 0.0000 7 6 5.6943 2.3693 0.0056 8 6 6.3504 1.1341 0.0003 9 6 7.8291 1.0698 -0.0001 10 8 8.3909 0.0011 0.1382 11 7 8.5525 2.1965 -0.1538 12 6 8.0364 3.5798 -0.2363 13 6 9.2968 4.4711 -0.4624 14 1 9.1185 5.4598 -0.8852 15 6 10.1729 3.4771 -1.3062 16 6 10.0373 2.3008 -0.2688 17 1 10.5681 1.3752 -0.4917 18 6 10.4730 3.0426 1.0262 19 7 10.0077 4.4350 0.8499 20 6 10.1916 5.4802 1.7153 21 1 9.8010 6.4574 1.4726 22 6 10.8800 5.2837 2.9045 23 7 11.3556 4.0926 3.2005 24 14 11.1315 6.7095 4.0848 25 1 9.8108 7.2332 4.5171 26 1 11.8906 6.2414 5.2721 27 1 11.8926 7.7876 3.4037 28 6 5.5903 -0.0385 0.0013 29 7 4.2773 0.0128 0.0012 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.9499 -0.8401 0.0004 34 1 3.7695 3.3137 -0.0004 35 1 6.2539 3.2931 0.0095 36 1 7.3482 3.6775 -1.0759 37 1 7.5405 3.8547 0.6946 38 1 9.7199 3.2395 -2.2688 39 1 11.2024 3.8190 -1.4121 40 1 11.5576 3.0165 1.1314 41 1 9.9981 2.5925 1.8980 42 1 11.8363 3.9552 4.0318 43 1 6.0875 -0.9973 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032737650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = 52.127500 kcal Electronic energy + Delta-G solvation = -27993.164414 eV Core-core repulsion = 24041.312717 eV Total energy + Delta-G solvation = -3951.851697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09438 -40.16551 -39.07767 -37.74735 -34.99310 -34.09138 -32.97414 -31.77881 -31.30873 -29.24686 -28.72967 -27.59348 -25.66306 -24.89382 -23.79230 -23.46314 -21.20027 -20.96228 -19.99798 -19.16254 -18.49157 -17.62438 -16.93004 -16.45878 -16.03564 -15.72063 -15.58654 -15.42303 -15.01783 -14.77893 -14.35765 -14.05557 -13.94969 -13.66015 -13.48359 -13.29478 -12.92313 -12.64961 -12.59753 -12.12666 -12.00754 -11.80638 -11.41867 -11.13398 -10.95628 -10.78995 -10.70811 -10.63280 -10.36674 -10.19216 -10.13198 -10.04875 -9.72406 -9.57418 -9.53945 -9.30965 -8.77647 -8.20693 -7.02406 -5.84518 -3.19955 0.14244 0.99987 2.28894 2.81538 3.08500 3.12535 3.33304 3.37809 3.39919 3.76723 3.85947 4.34728 4.46535 4.53770 4.66839 4.76338 4.85821 4.90881 5.02923 5.08500 5.16806 5.23391 5.43332 5.44952 5.46617 5.52267 5.64735 5.70287 5.75550 5.80182 5.92819 6.04239 6.10083 6.24972 6.27773 6.35573 6.46492 6.53085 7.07282 7.32733 7.37391 7.46723 7.63557 7.83803 7.87476 8.01414 8.31397 9.01744 9.62867 10.30238 11.27355 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.002973 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.588463 B = 9416.131871 C =10257.439023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.717 5.717 3 C 0.572 3.428 4 O -0.530 6.530 5 C 0.085 3.915 6 C -0.116 4.116 7 C -0.078 4.078 8 C -0.147 4.147 9 C 0.572 3.428 10 O -0.543 6.543 11 N -0.596 5.596 12 C 0.068 3.932 13 C 0.140 3.860 14 H 0.110 0.890 15 C -0.150 4.150 16 C 0.100 3.900 17 H 0.117 0.883 18 C 0.171 3.829 19 N -0.596 5.596 20 C -0.237 4.237 21 H 0.081 0.919 22 C -0.004 4.004 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.153 3.847 29 N -0.467 5.467 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.153 0.847 35 H 0.178 0.822 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.255 0.745 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 -6.661 -9.944 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.369 5.369 3 C 0.357 3.643 4 O -0.406 6.406 5 C -0.053 4.053 6 C -0.137 4.137 7 C -0.103 4.103 8 C -0.153 4.153 9 C 0.359 3.641 10 O -0.422 6.422 11 N -0.328 5.328 12 C -0.057 4.057 13 C 0.031 3.969 14 H 0.128 0.872 15 C -0.190 4.190 16 C -0.002 4.002 17 H 0.135 0.865 18 C 0.046 3.954 19 N -0.320 5.320 20 C -0.364 4.364 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.564 5.564 24 Si 0.744 3.256 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.210 1.210 28 C -0.008 4.008 29 N -0.178 5.178 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.250 0.750 34 H 0.171 0.829 35 H 0.195 0.805 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.249 -7.252 -9.570 19.410 hybrid contribution 0.755 1.003 0.866 1.526 sum -14.494 -6.249 -8.704 18.025 Atomic orbital electron populations 1.21609 0.79085 1.02547 1.02535 1.45633 1.07787 1.09139 1.74311 1.17951 0.85807 0.84045 0.76471 1.90789 1.68839 1.31300 1.49661 1.21238 0.94050 0.90136 0.99881 1.22138 0.94358 0.99420 0.97754 1.23272 0.94616 1.00203 0.92192 1.21292 0.95297 0.95293 1.03386 1.17593 0.85481 0.83306 0.77677 1.90759 1.72022 1.28332 1.51113 1.49108 1.08736 1.05661 1.69265 1.23783 0.99269 0.82336 1.00323 1.23236 0.89588 0.95773 0.88290 0.87201 1.24222 1.01595 0.96711 0.96433 1.24398 0.78691 0.98148 0.98948 0.86499 1.21861 0.98908 0.83178 0.91404 1.45255 1.63279 1.06593 1.16896 1.18994 1.30952 0.88710 0.97774 0.90091 1.24834 1.00168 0.96969 0.98106 1.69903 1.41205 1.20375 1.24938 0.86186 0.77813 0.81210 0.80430 1.21091 1.21596 1.21035 1.22921 0.87876 0.98504 0.91473 1.67580 1.10226 1.28059 1.11928 0.90334 0.91941 0.91971 0.75049 0.82889 0.80494 0.91791 0.90029 0.91450 0.89468 0.92317 0.93303 0.93424 0.80683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.72 -6.66 5.70 -67.89 -0.39 -7.05 16 3 C 0.57 7.13 7.82 -12.11 -0.09 7.03 16 4 O -0.53 -7.93 16.31 5.38 0.09 -7.84 16 5 C 0.08 1.07 6.75 -82.94 -0.56 0.51 16 6 C -0.12 -1.42 9.62 -39.10 -0.38 -1.80 16 7 C -0.08 -0.99 8.82 -38.90 -0.34 -1.34 16 8 C -0.15 -2.13 5.89 -104.72 -0.62 -2.75 16 9 C 0.57 9.91 7.86 -12.26 -0.10 9.81 16 10 O -0.54 -10.81 16.76 5.34 0.09 -10.72 16 11 N -0.60 -10.17 2.95 -157.93 -0.47 -10.64 16 12 C 0.07 1.03 4.25 -1.67 -0.01 1.02 16 13 C 0.14 2.36 5.53 -62.55 -0.35 2.02 16 14 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 15 C -0.15 -2.31 6.83 -22.10 -0.15 -2.46 16 16 C 0.10 1.80 5.22 -62.65 -0.33 1.47 16 17 H 0.12 2.03 8.07 -51.92 -0.42 1.61 16 18 C 0.17 3.90 4.75 -1.98 -0.01 3.89 16 19 N -0.60 -13.48 3.02 -156.68 -0.47 -13.96 16 20 C -0.24 -6.02 10.37 -15.06 -0.16 -6.17 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 22 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 23 N -0.92 -26.00 10.56 55.49 0.59 -25.41 16 24 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.15 2.02 10.76 -17.18 -0.18 1.83 16 29 N -0.47 -5.81 9.52 -9.48 -0.09 -5.90 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.41 3.26 8.15 -40.82 -0.33 2.93 16 34 H 0.15 1.70 7.63 -52.48 -0.40 1.30 16 35 H 0.18 2.14 3.03 -52.49 -0.16 1.98 16 36 H 0.06 0.76 6.78 -51.93 -0.35 0.41 16 37 H 0.08 1.35 6.95 -51.93 -0.36 0.99 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.06 1.48 7.46 -51.93 -0.39 1.09 16 41 H 0.05 1.30 7.67 -51.93 -0.40 0.90 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.18 2.12 7.67 -52.48 -0.40 1.72 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -32.39 354.76 -8.35 -40.74 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.29 Total: 5.16 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: -2.72 Total: 14.12 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.83 Total: -62.96 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.18 Total: -18.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.39 -8.35 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032737650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.871 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds