Wall clock time and date at job start Tue Mar 31 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35640 * 117.00183 * 2 1 4 4 C 1.40767 * 120.33001 * 0.02562 * 3 2 1 5 5 C 1.35010 * 120.04464 * 179.72242 * 4 3 2 6 6 N 1.36028 * 120.85953 * 0.22937 * 5 4 3 7 7 C 1.36661 * 120.88622 * 0.02562 * 6 5 4 8 8 C 1.37973 * 120.33570 * 180.27120 * 3 2 1 9 9 N 1.33333 * 108.61196 * 180.02562 * 7 6 5 10 10 C 1.32322 * 109.84734 * 359.97438 * 9 7 6 11 11 C 1.38511 * 108.26380 * 0.02562 * 10 9 7 12 12 C 1.41641 * 126.78616 * 179.97438 * 11 10 9 13 13 O 1.21802 * 119.99455 * 174.92465 * 12 11 10 14 14 N 1.34770 * 120.00520 * 354.92408 * 12 11 10 15 15 C 1.46503 * 120.00278 * 185.04616 * 14 12 11 16 16 C 1.52997 * 109.47472 * 180.02562 * 15 14 12 17 17 H 1.08998 * 112.74198 * 303.77100 * 16 15 14 18 18 C 1.53497 * 113.47136 * 172.94265 * 16 15 14 19 19 C 1.53495 * 83.34644 * 219.15740 * 18 16 15 20 20 N 1.47067 * 87.98715 * 26.06461 * 19 18 16 21 21 C 1.36937 * 136.05606 * 152.90940 * 20 19 18 22 22 H 1.08003 * 119.99887 * 179.97438 * 21 20 19 23 23 C 1.38808 * 120.00107 * 359.96034 * 21 20 19 24 24 N 1.31615 * 120.00083 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99923 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47241 * 59.99702 * 25 23 21 27 27 H 1.48507 * 109.46873 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47149 * 299.99656 * 25 23 21 29 29 H 1.09000 * 109.46652 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46776 * 299.99296 * 1 2 3 31 31 H 1.08990 * 109.47196 * 59.99610 * 1 2 3 32 32 H 1.08000 * 119.97689 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.56657 * 180.25292 * 5 4 3 34 34 H 1.08002 * 120.39118 * 359.97438 * 8 3 2 35 35 H 1.08000 * 125.86710 * 179.97438 * 10 9 7 36 36 H 0.97000 * 120.00465 * 5.05561 * 14 12 11 37 37 H 1.08992 * 109.47382 * 300.00686 * 15 14 12 38 38 H 1.09008 * 109.46495 * 60.00514 * 15 14 12 39 39 H 1.09000 * 114.20070 * 332.74393 * 18 16 15 40 40 H 1.08998 * 114.20331 * 105.56562 * 18 16 15 41 41 H 1.09003 * 113.46336 * 271.28977 * 19 18 16 42 42 H 1.08991 * 113.46992 * 140.84971 * 19 18 16 43 43 H 0.97000 * 120.00061 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2851 2.3935 0.0005 5 6 1.9040 3.5934 0.0062 6 7 3.2617 3.6781 0.0068 7 6 4.0349 2.5513 0.0011 8 6 3.4223 1.2888 -0.0056 9 7 5.3176 2.9154 0.0036 10 6 5.4099 4.2354 0.0102 11 6 4.1280 4.7602 0.0126 12 6 3.7729 6.1313 0.0199 13 8 2.6030 6.4578 -0.0721 14 7 4.7292 7.0747 0.1285 15 6 4.3556 8.4863 0.2473 16 6 5.6199 9.3412 0.3547 17 1 6.2627 9.0407 1.1821 18 6 5.3430 10.8504 0.3109 19 6 6.6219 10.8796 -0.5374 20 7 6.3374 9.4885 -0.9206 21 6 6.6178 8.6842 -1.9928 22 1 6.2693 7.6620 -2.0068 23 6 7.3496 9.1826 -3.0618 24 7 7.7736 10.4285 -3.0451 25 14 7.7326 8.0851 -4.5241 26 1 6.4638 7.6233 -5.1422 27 1 8.5202 8.8500 -5.5242 28 1 8.5179 6.9099 -4.0688 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 0.2063 2.3428 0.0005 33 1 1.3135 4.4976 0.0107 34 1 4.0219 0.3905 -0.0097 35 1 6.3271 4.8056 0.0139 36 1 5.6649 6.8191 0.1278 37 1 3.7877 8.7872 -0.6329 38 1 3.7449 8.6266 1.1393 39 1 4.4391 11.1232 -0.2337 40 1 5.4349 11.3497 1.2754 41 1 7.5317 10.9897 0.0528 42 1 6.5731 11.5785 -1.3723 43 1 8.2853 10.7767 -3.7920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038515896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:27 Heat of formation + Delta-G solvation = 83.531626 kcal Electronic energy + Delta-G solvation = -27584.668538 eV Core-core repulsion = 23634.178626 eV Total energy + Delta-G solvation = -3950.489912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.01582 -40.02276 -39.23397 -38.03594 -36.70615 -34.16113 -33.31421 -32.23552 -30.71922 -29.89392 -28.10904 -27.86122 -26.85482 -24.28377 -23.55461 -23.47882 -22.19997 -21.85850 -20.45662 -19.33482 -18.43689 -18.27624 -17.27896 -16.79123 -16.57298 -16.32282 -15.92685 -15.56108 -15.21252 -15.16263 -14.52931 -14.46516 -14.22631 -13.92557 -13.69480 -13.55377 -13.20407 -12.98227 -12.90949 -12.47765 -11.93524 -11.86889 -11.79951 -11.54510 -11.12459 -10.99421 -10.76728 -10.60962 -10.45874 -10.27711 -10.00707 -9.85559 -9.74970 -9.27246 -9.18186 -8.81838 -8.67630 -7.79384 -6.91707 -5.77940 -3.10877 0.42004 0.66821 2.15920 2.21940 2.61577 3.23858 3.39778 3.44689 3.44921 3.52540 3.62264 4.07458 4.19439 4.30925 4.43160 4.58041 4.66532 4.66930 4.78130 4.98952 5.00012 5.16003 5.27660 5.35043 5.39106 5.53924 5.57788 5.63468 5.71415 5.89767 5.98013 6.06983 6.28997 6.33168 6.38176 6.57437 6.66794 6.68435 6.81197 6.83302 7.21016 7.37362 7.56166 7.56923 7.81460 7.96311 8.43143 9.01601 9.69258 10.61139 11.39096 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.002936 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.820262 B = 9533.806054 C =10526.375444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.155 3.845 4 C -0.219 4.219 5 C 0.124 3.876 6 N -0.340 5.340 7 C 0.277 3.723 8 C -0.145 4.145 9 N -0.499 5.499 10 C 0.118 3.882 11 C -0.145 4.145 12 C 0.595 3.405 13 O -0.569 6.569 14 N -0.700 5.700 15 C 0.125 3.875 16 C 0.127 3.873 17 H 0.050 0.950 18 C -0.161 4.161 19 C 0.151 3.849 20 N -0.601 5.601 21 C -0.216 4.216 22 H 0.080 0.920 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.907 3.093 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.283 1.283 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.162 0.838 35 H 0.194 0.806 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.072 0.928 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.847 -15.741 9.658 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.103 3.897 4 C -0.240 4.240 5 C -0.002 4.002 6 N -0.012 5.012 7 C 0.037 3.963 8 C -0.167 4.167 9 N -0.219 5.219 10 C -0.041 4.041 11 C -0.257 4.257 12 C 0.383 3.617 13 O -0.451 6.451 14 N -0.350 5.350 15 C 0.001 3.999 16 C 0.019 3.981 17 H 0.067 0.933 18 C -0.200 4.200 19 C 0.026 3.974 20 N -0.327 5.327 21 C -0.343 4.343 22 H 0.098 0.902 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.210 1.210 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.178 0.822 33 H 0.200 0.800 34 H 0.179 0.821 35 H 0.211 0.789 36 H 0.240 0.760 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.785 -16.237 9.257 23.224 hybrid contribution -0.094 -0.024 -0.886 0.892 sum -13.879 -16.261 8.370 22.959 Atomic orbital electron populations 1.23192 0.77527 1.04597 1.01820 1.86042 1.21968 1.25589 1.88036 1.18849 0.91562 0.84474 0.94828 1.21075 1.01629 0.90454 1.10879 1.21849 0.81674 1.00747 0.95883 1.42587 1.05971 1.08117 1.44525 1.20599 0.86941 0.86781 1.01942 1.19351 0.91272 0.94927 1.11133 1.70590 1.13982 1.13148 1.24202 1.23303 0.95797 0.90330 0.94676 1.19912 0.89746 0.88941 1.27101 1.15341 0.85834 0.83303 0.77199 1.90766 1.18365 1.83245 1.52715 1.45614 1.09300 1.07058 1.73001 1.21848 0.98348 0.78424 1.01310 1.22432 0.91343 0.93460 0.90883 0.93308 1.23664 1.01153 0.95345 0.99815 1.22030 0.91763 0.88469 0.95171 1.45678 1.62407 1.10610 1.14030 1.18794 1.28893 0.93549 0.93083 0.90226 1.24759 1.00408 0.96573 0.98455 1.69812 1.41193 1.13687 1.31800 0.86282 0.78048 0.79513 0.82452 1.21153 1.21543 1.20994 0.87690 0.92164 0.92133 0.82240 0.80022 0.82077 0.78905 0.76024 0.90834 0.92154 0.90194 0.92304 0.95685 0.90971 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.30 -2.55 10.49 -18.62 -0.20 -2.74 16 3 C 0.15 1.52 6.72 -38.72 -0.26 1.26 16 4 C -0.22 -1.94 8.99 -39.77 -0.36 -2.30 16 5 C 0.12 1.46 10.49 -16.84 -0.18 1.28 16 6 N -0.34 -4.95 2.97 -60.20 -0.18 -5.13 16 7 C 0.28 3.99 7.76 -155.99 -1.21 2.78 16 8 C -0.15 -1.70 10.09 -38.89 -0.39 -2.09 16 9 N -0.50 -7.83 11.25 -12.31 -0.14 -7.96 16 10 C 0.12 1.76 11.32 -17.24 -0.20 1.57 16 11 C -0.14 -2.30 6.83 -83.40 -0.57 -2.87 16 12 C 0.59 10.36 7.59 -14.96 -0.11 10.25 16 13 O -0.57 -11.05 15.35 5.10 0.08 -10.97 16 14 N -0.70 -11.83 5.31 -63.21 -0.34 -12.17 16 15 C 0.13 2.20 5.53 -4.04 -0.02 2.18 16 16 C 0.13 2.36 4.10 -72.39 -0.30 2.07 16 17 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.16 -2.85 8.03 -26.22 -0.21 -3.06 16 19 C 0.15 3.40 7.39 -8.50 -0.06 3.34 16 20 N -0.60 -14.39 3.65 -176.98 -0.65 -15.04 16 21 C -0.22 -5.73 10.55 -15.06 -0.16 -5.89 16 22 H 0.08 2.02 7.50 -52.48 -0.39 1.63 16 23 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 24 N -0.92 -26.83 11.51 55.49 0.64 -26.19 16 25 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.19 7.68 -51.93 -0.40 -0.21 16 31 H 0.06 0.20 7.68 -51.93 -0.40 -0.19 16 32 H 0.16 0.84 6.39 -52.49 -0.34 0.51 16 33 H 0.18 2.10 6.79 -52.49 -0.36 1.75 16 34 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.19 2.39 7.37 -52.49 -0.39 2.01 16 36 H 0.40 6.45 7.16 -40.82 -0.29 6.16 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -34.33 363.15 -8.91 -43.23 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.45 Total: 5.03 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -3.13 Total: 9.38 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -0.66 Total: -66.49 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.12 Total: -13.71 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.33 -8.91 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038515896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.765 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds